Wall clock time and date at job start Mon Mar 30 2020 04:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46866 * 2 1 4 4 C 1.46903 * 110.99838 * 297.52767 * 3 2 1 5 5 C 1.50700 * 109.47128 * 292.36272 * 4 3 2 6 6 H 1.08001 * 120.00029 * 354.96092 * 5 4 3 7 7 C 1.37878 * 120.00412 * 174.95613 * 5 4 3 8 8 N 1.31519 * 119.99404 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00411 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47035 * 90.00276 * 9 7 5 11 11 H 1.48503 * 109.47423 * 210.00352 * 9 7 5 12 12 H 1.48506 * 109.47166 * 330.00317 * 9 7 5 13 13 C 1.46897 * 111.00502 * 61.47939 * 3 2 1 14 14 C 1.50700 * 109.46676 * 66.04360 * 13 3 2 15 15 O 1.20758 * 120.00421 * 0.02562 * 14 13 3 16 16 C 1.50709 * 119.99642 * 180.02562 * 14 13 3 17 17 C 1.50698 * 115.55073 * 34.33621 * 16 14 13 18 18 O 1.20823 * 120.00262 * 145.58150 * 17 16 14 19 19 O 1.34232 * 119.99919 * 325.57425 * 17 16 14 20 20 C 1.45195 * 117.00097 * 180.02562 * 19 17 16 21 21 C 1.53004 * 117.49521 * 248.62195 * 16 14 13 22 22 C 1.53003 * 60.00127 * 252.51222 * 21 16 14 23 23 H 1.08993 * 109.47091 * 299.09480 * 1 2 3 24 24 H 1.09002 * 109.47142 * 59.09331 * 1 2 3 25 25 H 1.08999 * 109.47101 * 179.09426 * 1 2 3 26 26 H 1.08998 * 109.47007 * 239.99828 * 2 1 3 27 27 H 1.08997 * 109.46883 * 119.99551 * 2 1 3 28 28 H 1.08997 * 109.47456 * 52.36381 * 4 3 2 29 29 H 1.09005 * 109.47114 * 172.36950 * 4 3 2 30 30 H 0.97001 * 119.99860 * 179.97438 * 8 7 5 31 31 H 1.08991 * 109.47619 * 186.04582 * 13 3 2 32 32 H 1.09001 * 109.47096 * 306.04835 * 13 3 2 33 33 H 1.08998 * 109.46885 * 180.02562 * 20 19 17 34 34 H 1.08997 * 109.47355 * 300.00297 * 20 19 17 35 35 H 1.09003 * 109.46959 * 60.00285 * 20 19 17 36 36 H 1.08992 * 117.50149 * 359.97438 * 21 16 14 37 37 H 1.09000 * 117.49269 * 145.02880 * 21 16 14 38 38 H 1.09002 * 117.50109 * 252.51645 * 22 21 16 39 39 H 1.09001 * 117.49476 * 107.48627 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5975 2.0926 -1.2162 5 6 2.2991 1.5002 -2.4111 6 1 3.0495 0.7359 -2.2727 7 6 1.9830 1.9338 -3.6812 8 7 1.0695 2.8649 -3.8498 9 14 2.8522 1.1991 -5.1624 10 1 2.0934 0.0176 -5.6457 11 1 2.9303 2.2135 -6.2441 12 1 4.2237 0.7819 -4.7749 13 6 1.5778 2.0997 1.2049 14 6 2.2298 1.4889 2.4186 15 8 2.9849 0.5550 2.2927 16 6 1.9393 2.0437 3.7894 17 6 0.5394 2.5610 3.9980 18 8 0.0058 2.4424 5.0755 19 8 -0.1148 3.1536 2.9867 20 6 -1.4596 3.6282 3.2597 21 6 3.0759 2.7678 4.5138 22 6 2.6322 1.3802 4.9814 23 1 -0.3633 0.4997 0.8979 24 1 -0.3633 0.5279 -0.8818 25 1 -0.3633 -1.0275 -0.0162 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5194 1.9904 -1.3403 29 1 1.8550 3.1483 -1.1303 30 1 0.8473 3.1702 -4.7432 31 1 1.8617 3.1493 1.1295 32 1 0.4944 2.0220 1.2967 33 1 -1.8733 4.0845 2.3605 34 1 -2.0864 2.7894 3.5624 35 1 -1.4286 4.3665 4.0610 36 1 4.0338 2.8426 3.9991 37 1 2.8112 3.6187 5.1414 38 1 2.0756 1.3183 5.9165 39 1 3.2981 0.5425 4.7739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690535579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:47 Heat of formation + Delta-G solvation = -98.743735 kcal Electronic energy + Delta-G solvation = -21494.978019 eV Core-core repulsion = 18210.847917 eV Total energy + Delta-G solvation = -3284.130102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13702 -40.71712 -38.66858 -37.79492 -36.77578 -34.68619 -31.50807 -30.50635 -29.09540 -27.55874 -25.59905 -24.98134 -23.61727 -23.15385 -21.24541 -20.50559 -18.79723 -18.32944 -17.85434 -17.65739 -16.92552 -16.72875 -16.32526 -16.14259 -15.85984 -15.39242 -14.97355 -14.57559 -14.31037 -14.20965 -14.03549 -13.49636 -13.12100 -13.06661 -12.89697 -12.69314 -12.59012 -12.58867 -12.51722 -12.34393 -11.96709 -11.85316 -11.78800 -11.61264 -11.52910 -11.34799 -10.56850 -10.49628 -8.90880 -8.16647 -6.24890 0.62507 0.99630 1.42405 1.43005 1.54802 1.58726 2.41006 2.55463 2.61115 3.16027 3.36761 3.44634 3.60031 3.73496 4.12973 4.22249 4.25753 4.31080 4.33331 4.52562 4.54976 4.56338 4.57303 4.66947 4.74610 4.81495 4.90407 4.98925 5.04582 5.22273 5.23188 5.35796 5.49094 5.70016 6.08896 6.31812 6.40451 6.54841 6.67646 6.90640 7.43851 8.93572 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025714 B = 0.004984 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.651766 B = 5617.095564 C = 6080.442154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.057 3.943 3 N -0.538 5.538 4 C 0.205 3.795 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.008 3.992 14 C 0.406 3.594 15 O -0.449 6.449 16 C -0.227 4.227 17 C 0.511 3.489 18 O -0.520 6.520 19 O -0.355 6.355 20 C 0.026 3.974 21 C -0.097 4.097 22 C -0.110 4.110 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.075 0.925 28 H -0.012 1.012 29 H 0.005 0.995 30 H 0.264 0.736 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 1.083 17.238 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.071 4.071 3 N -0.262 5.262 4 C 0.080 3.920 5 C -0.559 4.559 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.788 3.212 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.194 1.194 13 C -0.120 4.120 14 C 0.280 3.720 15 O -0.321 6.321 16 C -0.230 4.230 17 C 0.355 3.645 18 O -0.409 6.409 19 O -0.271 6.271 20 C -0.067 4.067 21 C -0.134 4.134 22 C -0.146 4.146 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.006 0.994 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.240 0.661 17.333 17.390 hybrid contribution -1.062 0.024 -1.111 1.537 sum -2.302 0.684 16.222 16.399 Atomic orbital electron populations 1.22288 0.98178 1.02336 1.00969 1.22050 0.92872 0.90445 1.01727 1.62096 1.59855 1.02558 1.01658 1.19458 0.93531 0.92648 0.86397 1.21414 1.21370 1.21686 0.91400 0.92729 1.25773 0.95970 0.95564 1.01804 1.70061 1.33245 1.30608 1.23197 0.85487 0.79043 0.78115 0.78599 1.19975 1.20612 1.19403 1.22540 0.99922 0.99855 0.89673 1.23554 0.78131 0.81112 0.89171 1.90346 1.29701 1.24256 1.87840 1.21653 0.91722 1.13107 0.96523 1.22011 0.86623 0.74057 0.81823 1.90640 1.68139 1.55016 1.27121 1.86629 1.31537 1.68705 1.40258 1.23613 0.78298 1.00054 1.04730 1.23360 0.94314 0.97212 0.98537 1.23280 0.99765 0.97545 0.94025 0.92717 0.93847 0.91032 0.92267 0.90710 0.99448 0.97705 0.92741 0.87471 0.89962 0.85932 0.91637 0.90699 0.85696 0.84901 0.85604 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.57 9.26 71.98 0.67 -5.90 16 2 C 0.06 2.36 5.55 86.31 0.48 2.84 16 3 N -0.54 -23.86 4.43 -905.37 -4.01 -27.87 16 4 C 0.21 10.77 4.54 85.56 0.39 11.15 16 5 C -0.52 -29.68 8.40 25.60 0.21 -29.46 16 6 H 0.05 3.15 7.42 -2.91 -0.02 3.12 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -55.07 13.29 21.45 0.28 -54.78 16 9 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 C 0.01 0.29 3.88 85.56 0.33 0.62 16 14 C 0.41 12.73 6.48 29.10 0.19 12.92 16 15 O -0.45 -16.22 14.22 -1.44 -0.02 -16.25 16 16 C -0.23 -5.48 2.53 -53.67 -0.14 -5.62 16 17 C 0.51 12.98 7.47 71.24 0.53 13.52 16 18 O -0.52 -14.39 16.01 21.97 0.35 -14.04 16 19 O -0.36 -8.79 7.46 -51.44 -0.38 -9.18 16 20 C 0.03 0.47 10.56 113.37 1.20 1.67 16 21 C -0.10 -1.66 9.94 30.60 0.30 -1.36 16 22 C -0.11 -2.08 9.56 30.60 0.29 -1.79 16 23 H 0.05 1.81 6.35 -2.39 -0.02 1.80 16 24 H 0.04 1.83 6.26 -2.39 -0.01 1.81 16 25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 2.69 7.01 -2.39 -0.02 2.67 16 27 H 0.07 2.94 5.86 -2.39 -0.01 2.92 16 28 H -0.01 -0.67 6.00 -2.39 -0.01 -0.68 16 29 H 0.00 0.27 7.90 -2.38 -0.02 0.25 16 30 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.11 3.70 7.91 -2.39 -0.02 3.68 16 32 H 0.08 2.82 4.35 -2.39 -0.01 2.81 16 33 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 36 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.13 2.17 7.67 -2.39 -0.02 2.15 16 39 H 0.12 2.33 7.67 -2.39 -0.02 2.31 16 Total: -1.00 -68.55 321.42 4.22 -64.32 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.05 Total: 11.72 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.92 Total: -0.54 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -3.72 Total: -82.66 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.05 Total: -39.46 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.55 4.22 -64.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690535579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.419 kcal (2) G-P(sol) polarization free energy of solvation -68.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds