Wall clock time and date at job start Mon Mar 30 2020 05:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48497 * 109.47147 * 269.99902 * 3 2 1 5 5 H 1.48499 * 109.46935 * 29.99975 * 3 2 1 6 6 H 1.48493 * 109.46944 * 150.00175 * 3 2 1 7 7 C 1.37873 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47433 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47310 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46591 * 55.00125 * 11 10 9 13 13 N 1.46893 * 109.47046 * 294.99894 * 11 10 9 14 14 C 1.50700 * 109.47080 * 174.99812 * 11 10 9 15 15 O 1.21279 * 120.00113 * 100.00242 * 14 11 10 16 16 N 1.34784 * 119.99961 * 280.00010 * 14 11 10 17 17 C 1.46494 * 119.99635 * 180.02562 * 16 14 11 18 18 C 1.53002 * 109.47001 * 180.02562 * 17 16 14 19 19 H 1.08999 * 110.85244 * 305.69919 * 18 17 16 20 20 C 1.54478 * 110.97407 * 69.48987 * 18 17 16 21 21 N 1.46816 * 105.44906 * 143.51022 * 20 18 17 22 22 C 1.34425 * 111.31347 * 343.03538 * 21 20 18 23 23 O 1.21283 * 124.94031 * 180.40874 * 22 21 20 24 24 C 1.51277 * 110.11470 * 0.37913 * 22 21 20 25 25 H 0.96999 * 119.99562 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47155 * 60.00191 * 9 7 2 27 27 H 1.09002 * 109.47395 * 300.00617 * 9 7 2 28 28 H 1.08999 * 109.47240 * 60.00201 * 10 9 7 29 29 H 1.08999 * 109.47055 * 299.99928 * 10 9 7 30 30 H 1.00902 * 110.99723 * 176.04350 * 13 11 10 31 31 H 1.00899 * 110.99966 * 299.99901 * 13 11 10 32 32 H 0.96995 * 120.00015 * 359.72695 * 16 14 11 33 33 H 1.09005 * 109.47306 * 299.99972 * 17 16 14 34 34 H 1.09002 * 109.47518 * 60.00210 * 17 16 14 35 35 H 1.09004 * 110.24316 * 262.53929 * 20 18 17 36 36 H 1.08997 * 110.24659 * 24.53077 * 20 18 17 37 37 H 0.96997 * 124.33780 * 162.99423 * 21 20 18 38 38 H 1.08999 * 110.48659 * 257.57009 * 24 22 21 39 39 H 1.09006 * 110.60429 * 134.98823 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.7883 -5.0067 -0.8433 13 7 0.7280 -5.1189 1.2537 14 6 2.4548 -6.1298 -0.1251 15 8 2.7863 -6.7537 0.8607 16 7 2.9581 -6.4585 -1.3314 17 6 3.9051 -7.5697 -1.4519 18 6 4.3189 -7.7307 -2.9160 19 1 3.4439 -7.8387 -3.5569 20 6 5.1980 -6.5465 -3.3756 21 7 6.1912 -7.1275 -4.2874 22 6 6.2637 -8.4622 -4.1447 23 8 7.0072 -9.1883 -4.7699 24 6 5.2834 -8.9267 -3.0903 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6043 -0.8905 30 1 0.1636 -5.9553 1.2508 31 1 1.3476 -5.1034 2.0499 32 1 2.6899 -5.9622 -2.1204 33 1 4.7873 -7.3626 -0.8460 34 1 3.4332 -8.4887 -1.1042 35 1 4.5914 -5.8073 -3.8990 36 1 5.6939 -6.0901 -2.5190 37 1 6.7261 -6.6141 -4.9129 38 1 5.8012 -9.1385 -2.1549 39 1 4.7406 -9.8078 -3.4327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691540660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:47 Heat of formation + Delta-G solvation = -92.583043 kcal Electronic energy + Delta-G solvation = -20199.536985 eV Core-core repulsion = 16947.966782 eV Total energy + Delta-G solvation = -3251.570204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77473 -39.73695 -37.19376 -35.34256 -34.79085 -32.84180 -31.98428 -30.14775 -28.44566 -26.87234 -25.52872 -23.40753 -21.33757 -20.99613 -20.62785 -19.82023 -17.76106 -17.33548 -16.84063 -16.32781 -15.79817 -15.52196 -15.32520 -15.12240 -14.50270 -14.22199 -14.02998 -13.79841 -13.53620 -13.50848 -12.80768 -12.63468 -12.36189 -12.05809 -11.69348 -11.56902 -11.48469 -10.93227 -10.73295 -10.59924 -10.31372 -10.16463 -9.85431 -9.51172 -9.42663 -9.20335 -9.03967 -8.40374 -8.25519 -5.97899 -4.00333 2.23384 2.68638 2.95675 3.11306 3.31179 3.38342 3.41254 3.87164 3.95736 4.21514 4.46253 4.55422 4.77820 4.83827 5.04496 5.06510 5.09659 5.24794 5.29962 5.37744 5.45674 5.48577 5.65657 5.76978 6.27968 6.37150 6.38605 6.59076 6.61562 7.02961 7.29374 7.50165 7.71319 7.74690 7.86945 7.91599 8.08678 8.21635 8.43776 9.07810 9.63152 11.12938 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003627 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.709293 B = 7717.863825 C = 8866.768937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.552 6.552 16 N -0.733 5.733 17 C 0.128 3.872 18 C -0.114 4.114 19 H 0.101 0.899 20 C 0.100 3.900 21 N -0.731 5.731 22 C 0.520 3.480 23 O -0.537 6.537 24 C -0.149 4.149 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.334 0.666 31 H 0.348 0.652 32 H 0.403 0.597 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.412 0.588 38 H 0.110 0.890 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.673 -15.387 -6.865 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.335 5.335 14 C 0.269 3.731 15 O -0.430 6.430 16 N -0.386 5.386 17 C 0.004 3.996 18 C -0.133 4.133 19 H 0.119 0.881 20 C -0.025 4.025 21 N -0.387 5.387 22 C 0.306 3.694 23 O -0.414 6.414 24 C -0.189 4.189 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.238 0.762 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.250 0.750 38 H 0.128 0.872 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.720 -15.469 -6.573 18.101 hybrid contribution 1.120 0.599 -0.562 1.389 sum 7.840 -14.870 -7.135 18.262 Atomic orbital electron populations 1.69973 1.05954 1.26456 1.50742 1.24991 0.94805 0.99067 0.95454 0.86654 0.79900 0.83787 0.77984 1.20785 1.21251 1.19977 1.21271 0.92879 0.91326 1.50706 0.92997 1.19017 0.93564 0.89821 0.98224 1.21656 0.98842 0.92167 1.00648 1.21856 0.93519 0.93243 0.95164 0.88385 1.58989 1.26921 1.44314 1.03289 1.22799 0.82118 0.85719 0.82419 1.90658 1.60977 1.54190 1.37134 1.46153 1.46816 1.35083 1.10565 1.21298 0.93623 0.90888 0.93816 1.22425 0.98689 0.94663 0.97568 0.88087 1.22275 0.90246 0.95946 0.94008 1.46263 1.42460 1.08421 1.41524 1.20858 0.83084 0.82435 0.82978 1.90771 1.42069 1.58584 1.49973 1.22336 0.97104 0.99287 1.00199 0.93068 0.96877 0.94672 0.92841 0.92840 0.85421 0.83787 0.76193 0.91012 0.90831 0.89494 0.90188 0.74969 0.87224 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.03 0.75 4.86 -27.89 -0.14 0.62 16 10 C -0.09 -1.77 4.78 -26.73 -0.13 -1.89 16 11 C 0.08 1.18 3.15 -68.87 -0.22 0.97 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 13 N -0.81 -12.74 8.44 -5.66 -0.05 -12.79 16 14 C 0.48 6.62 7.07 -10.98 -0.08 6.55 16 15 O -0.55 -9.24 16.25 5.56 0.09 -9.15 16 16 N -0.73 -7.02 5.44 -60.29 -0.33 -7.35 16 17 C 0.13 1.00 4.97 -4.04 -0.02 0.98 16 18 C -0.11 -0.64 3.18 -88.99 -0.28 -0.92 16 19 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 20 C 0.10 0.58 7.20 -3.09 -0.02 0.56 16 21 N -0.73 -5.32 6.24 -59.17 -0.37 -5.69 16 22 C 0.52 5.01 8.43 -10.86 -0.09 4.92 16 23 O -0.54 -7.56 18.03 5.55 0.10 -7.46 16 24 C -0.15 -0.96 6.42 -26.75 -0.17 -1.13 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.33 4.53 9.06 -39.29 -0.36 4.18 16 31 H 0.35 5.62 8.58 -39.29 -0.34 5.28 16 32 H 0.40 3.04 8.43 -40.82 -0.34 2.70 16 33 H 0.07 0.64 8.00 -51.93 -0.42 0.22 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.51 7.79 -51.93 -0.40 0.10 16 37 H 0.41 2.58 8.96 -40.82 -0.37 2.21 16 38 H 0.11 0.64 7.90 -51.93 -0.41 0.23 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -34.85 330.84 -7.37 -42.22 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.96 Total: 7.04 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.56 Total: -2.43 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.01 Total: -51.39 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.19 Total: -16.61 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.85 -7.37 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691540660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.362 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds