Wall clock time and date at job start Mon Mar 30 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48497 * 109.47147 * 269.99902 * 3 2 1 5 5 H 1.48499 * 109.46935 * 29.99975 * 3 2 1 6 6 H 1.48493 * 109.46944 * 150.00175 * 3 2 1 7 7 C 1.37873 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47433 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47310 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46591 * 55.00125 * 11 10 9 13 13 N 1.46893 * 109.47046 * 294.99894 * 11 10 9 14 14 C 1.50700 * 109.47080 * 174.99812 * 11 10 9 15 15 O 1.21279 * 120.00113 * 100.00242 * 14 11 10 16 16 N 1.34784 * 119.99961 * 280.00010 * 14 11 10 17 17 C 1.46494 * 119.99635 * 180.02562 * 16 14 11 18 18 C 1.53002 * 109.47001 * 180.02562 * 17 16 14 19 19 H 1.08999 * 110.85244 * 305.69919 * 18 17 16 20 20 C 1.54478 * 110.97407 * 69.48987 * 18 17 16 21 21 N 1.46816 * 105.44906 * 143.51022 * 20 18 17 22 22 C 1.34425 * 111.31347 * 343.03538 * 21 20 18 23 23 O 1.21283 * 124.94031 * 180.40874 * 22 21 20 24 24 C 1.51277 * 110.11470 * 0.37913 * 22 21 20 25 25 H 0.96999 * 119.99562 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47155 * 60.00191 * 9 7 2 27 27 H 1.09002 * 109.47395 * 300.00617 * 9 7 2 28 28 H 1.08999 * 109.47240 * 60.00201 * 10 9 7 29 29 H 1.08999 * 109.47055 * 299.99928 * 10 9 7 30 30 H 1.00902 * 110.99723 * 176.04350 * 13 11 10 31 31 H 1.00899 * 110.99966 * 299.99901 * 13 11 10 32 32 H 0.96995 * 120.00015 * 359.72695 * 16 14 11 33 33 H 1.09005 * 109.47306 * 299.99972 * 17 16 14 34 34 H 1.09002 * 109.47518 * 60.00210 * 17 16 14 35 35 H 1.09004 * 110.24316 * 262.53929 * 20 18 17 36 36 H 1.08997 * 110.24659 * 24.53077 * 20 18 17 37 37 H 0.96997 * 124.33780 * 162.99423 * 21 20 18 38 38 H 1.08999 * 110.48659 * 257.57009 * 24 22 21 39 39 H 1.09006 * 110.60429 * 134.98823 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.7883 -5.0067 -0.8433 13 7 0.7280 -5.1189 1.2537 14 6 2.4548 -6.1298 -0.1251 15 8 2.7863 -6.7537 0.8607 16 7 2.9581 -6.4585 -1.3314 17 6 3.9051 -7.5697 -1.4519 18 6 4.3189 -7.7307 -2.9160 19 1 3.4439 -7.8387 -3.5569 20 6 5.1980 -6.5465 -3.3756 21 7 6.1912 -7.1275 -4.2874 22 6 6.2637 -8.4622 -4.1447 23 8 7.0072 -9.1883 -4.7699 24 6 5.2834 -8.9267 -3.0903 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8895 29 1 2.8718 -3.6043 -0.8905 30 1 0.1636 -5.9553 1.2508 31 1 1.3476 -5.1034 2.0499 32 1 2.6899 -5.9622 -2.1204 33 1 4.7873 -7.3626 -0.8460 34 1 3.4332 -8.4887 -1.1042 35 1 4.5914 -5.8073 -3.8990 36 1 5.6939 -6.0901 -2.5190 37 1 6.7261 -6.6141 -4.9129 38 1 5.8012 -9.1385 -2.1549 39 1 4.7406 -9.8078 -3.4327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691540660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:46 Heat of formation + Delta-G solvation = -122.252125 kcal Electronic energy + Delta-G solvation = -20200.823533 eV Core-core repulsion = 16947.966782 eV Total energy + Delta-G solvation = -3252.856752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47995 -40.77912 -37.99441 -36.74804 -35.70189 -34.76637 -32.66332 -31.86907 -29.19408 -28.09317 -26.69518 -24.86610 -22.33802 -21.93910 -21.50513 -20.97720 -18.71256 -18.34438 -17.94484 -17.73247 -16.97721 -16.64753 -16.36051 -16.06863 -15.96382 -15.31967 -14.91530 -14.85998 -14.47985 -14.23454 -14.15717 -13.79972 -13.50876 -13.39614 -13.18695 -12.76980 -12.48566 -12.22496 -12.18546 -12.02510 -11.70836 -11.59752 -11.20921 -11.06735 -10.92496 -10.45537 -10.14234 -10.07685 -9.55311 -8.11023 -6.20710 1.43781 1.45345 1.51461 1.55264 1.59274 2.18928 2.42793 2.47104 3.22486 3.28439 3.42170 3.65126 3.71664 3.92427 4.09381 4.18978 4.27967 4.39739 4.57671 4.62059 4.71405 4.75944 4.85390 4.90419 5.01848 5.14067 5.32218 5.45317 5.61576 5.79918 5.90386 5.98345 6.03730 6.17484 6.34315 6.51391 6.60281 6.99266 7.19399 7.22521 7.47565 9.00050 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003627 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.709293 B = 7717.863825 C = 8866.768937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.081 4.081 11 C 0.083 3.917 12 H 0.113 0.887 13 N -0.823 5.823 14 C 0.490 3.510 15 O -0.583 6.583 16 N -0.714 5.714 17 C 0.130 3.870 18 C -0.098 4.098 19 H 0.121 0.879 20 C 0.096 3.904 21 N -0.723 5.723 22 C 0.511 3.489 23 O -0.591 6.591 24 C -0.143 4.143 25 H 0.261 0.739 26 H -0.004 1.004 27 H 0.003 0.997 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.346 0.654 31 H 0.344 0.656 32 H 0.417 0.583 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.415 0.585 38 H 0.117 0.883 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 -15.372 -7.671 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.075 0.925 9 C 0.001 3.999 10 C -0.120 4.120 11 C -0.032 4.032 12 H 0.130 0.870 13 N -0.352 5.352 14 C 0.275 3.725 15 O -0.464 6.464 16 N -0.367 5.367 17 C 0.006 3.994 18 C -0.117 4.117 19 H 0.139 0.861 20 C -0.028 4.028 21 N -0.377 5.377 22 C 0.299 3.701 23 O -0.472 6.472 24 C -0.183 4.183 25 H 0.070 0.930 26 H 0.014 0.986 27 H 0.021 0.979 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.254 0.746 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.254 0.746 38 H 0.135 0.865 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.296 -15.435 -7.415 18.613 hybrid contribution 0.923 0.607 -0.317 1.150 sum 8.219 -14.828 -7.732 18.634 Atomic orbital electron populations 1.70104 1.07617 1.27408 1.51945 1.25879 0.95648 1.02948 0.95156 0.85574 0.78636 0.79136 0.78434 1.19634 1.21283 1.19114 1.21760 0.93415 0.92744 1.50010 0.92481 1.18838 0.93970 0.91406 0.95731 1.21389 0.97644 0.91968 1.00977 1.21667 0.93866 0.92229 0.95465 0.86962 1.58969 1.27373 1.45344 1.03480 1.22271 0.81852 0.85200 0.83155 1.90655 1.61977 1.55237 1.38488 1.45977 1.45891 1.35073 1.09712 1.21361 0.92781 0.90052 0.95167 1.22315 0.99092 0.94042 0.96275 0.86140 1.22434 0.90108 0.96304 0.93925 1.46336 1.42252 1.07916 1.41224 1.21384 0.82906 0.82835 0.82966 1.90740 1.44382 1.59912 1.52130 1.22332 0.96580 0.99976 0.99412 0.93031 0.98595 0.97896 0.94131 0.90799 0.84053 0.84230 0.74636 0.91713 0.90669 0.87572 0.90333 0.74558 0.86513 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -29.44 9.11 25.60 0.23 -29.21 16 8 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.04 1.85 4.86 29.85 0.15 2.00 16 10 C -0.08 -2.95 4.78 30.59 0.15 -2.81 16 11 C 0.08 2.42 3.15 44.17 0.14 2.56 16 12 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 13 N -0.82 -25.66 8.44 -171.81 -1.45 -27.11 16 14 C 0.49 12.43 7.07 87.66 0.62 13.05 16 15 O -0.58 -18.69 16.25 -3.03 -0.05 -18.74 16 16 N -0.71 -11.51 5.44 -463.05 -2.52 -14.03 16 17 C 0.13 1.66 4.97 86.38 0.43 2.09 16 18 C -0.10 -0.78 3.18 -9.74 -0.03 -0.81 16 19 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 20 C 0.10 0.84 7.20 86.82 0.63 1.46 16 21 N -0.72 -9.22 6.24 -459.69 -2.87 -12.09 16 22 C 0.51 9.26 8.43 87.90 0.74 10.00 16 23 O -0.59 -16.66 18.03 -3.04 -0.05 -16.71 16 24 C -0.14 -1.52 6.42 30.58 0.20 -1.32 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 27 H 0.00 0.14 7.75 -2.39 -0.02 0.12 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.35 9.15 9.06 -89.69 -0.81 8.33 16 31 H 0.34 11.13 8.58 -89.69 -0.77 10.36 16 32 H 0.42 4.70 8.43 -92.71 -0.78 3.92 16 33 H 0.06 0.99 8.00 -2.38 -0.02 0.97 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.77 7.79 -2.39 -0.02 0.75 16 37 H 0.42 4.62 8.96 -92.71 -0.83 3.79 16 38 H 0.12 1.11 7.90 -2.39 -0.02 1.09 16 39 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -76.14 330.84 -3.02 -79.17 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -2.10 Total: 21.91 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 3.71 Total: -2.45 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -6.56 Total: -108.34 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.10 Total: -35.45 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -76.14 -3.02 -79.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691540660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.087 kcal (2) G-P(sol) polarization free energy of solvation -76.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds