Wall clock time and date at job start Mon Mar 30 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48503 * 109.47231 * 270.00132 * 3 2 1 5 5 H 1.48508 * 109.47010 * 30.00115 * 3 2 1 6 6 H 1.48494 * 109.47398 * 150.00068 * 3 2 1 7 7 C 1.37887 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99417 * 0.02562 * 7 2 1 10 10 C 1.53011 * 109.46746 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47134 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46922 * 305.00135 * 11 10 9 13 13 N 1.46906 * 109.46907 * 65.00065 * 11 10 9 14 14 C 1.50698 * 109.47342 * 185.00123 * 11 10 9 15 15 O 1.21283 * 119.99975 * 260.00470 * 14 11 10 16 16 N 1.34773 * 120.00352 * 79.99610 * 14 11 10 17 17 C 1.46496 * 120.00079 * 180.02562 * 16 14 11 18 18 C 1.53002 * 109.46797 * 180.02562 * 17 16 14 19 19 H 1.08999 * 110.85737 * 54.29867 * 18 17 16 20 20 C 1.54482 * 110.97083 * 290.50884 * 18 17 16 21 21 N 1.46826 * 105.44505 * 216.49424 * 20 18 17 22 22 C 1.34420 * 111.31551 * 16.96614 * 21 20 18 23 23 O 1.21275 * 124.94182 * 179.58940 * 22 21 20 24 24 C 1.51284 * 110.11452 * 359.62237 * 22 21 20 25 25 H 0.96991 * 119.99848 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47779 * 60.00146 * 9 7 2 27 27 H 1.08998 * 109.47136 * 299.98973 * 9 7 2 28 28 H 1.09000 * 109.46772 * 59.99639 * 10 9 7 29 29 H 1.08994 * 109.46772 * 299.99892 * 10 9 7 30 30 H 1.00896 * 111.00309 * 59.99727 * 13 11 10 31 31 H 1.00902 * 110.99923 * 183.95891 * 13 11 10 32 32 H 0.97007 * 119.99625 * 0.02562 * 16 14 11 33 33 H 1.09001 * 109.47246 * 299.99806 * 17 16 14 34 34 H 1.09000 * 109.47205 * 60.00688 * 17 16 14 35 35 H 1.09003 * 110.24723 * 335.46596 * 20 18 17 36 36 H 1.08998 * 110.24217 * 97.46881 * 20 18 17 37 37 H 0.96996 * 124.33403 * 197.00160 * 21 20 18 38 38 H 1.09002 * 110.48006 * 225.07193 * 24 22 21 39 39 H 1.08999 * 110.48675 * 102.43012 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 1 0.7884 -5.0075 0.8388 13 7 0.7281 -5.1177 -1.2584 14 6 2.4549 -6.1300 0.1196 15 8 2.7864 -6.7529 -0.8669 16 7 2.9582 -6.4598 1.3255 17 6 3.9061 -7.5704 1.4447 18 6 4.3187 -7.7336 2.9090 19 1 3.4433 -7.8434 3.5490 20 6 5.1965 -6.5494 3.3713 21 7 6.1896 -7.1313 4.2829 22 6 6.2632 -8.4656 4.1379 23 8 7.0068 -9.1922 4.7624 24 6 5.2841 -8.9290 3.0818 25 1 -0.4849 0.8400 0.0004 26 1 0.6247 -2.5564 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8720 -3.6051 0.8873 29 1 2.8719 -3.6036 -0.8927 30 1 1.3476 -5.1015 -2.0546 31 1 0.1637 -5.9541 -1.2563 32 1 2.6929 -5.9617 2.1145 33 1 3.4349 -8.4893 1.0959 34 1 4.7882 -7.3618 0.8394 35 1 5.6928 -6.0912 2.5158 36 1 4.5889 -5.8117 3.8955 37 1 6.7235 -6.6186 4.9097 38 1 4.7423 -9.8105 3.4247 39 1 5.8029 -9.1388 2.1465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691540663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:49 Heat of formation + Delta-G solvation = -92.569333 kcal Electronic energy + Delta-G solvation = -20199.745475 eV Core-core repulsion = 16948.175866 eV Total energy + Delta-G solvation = -3251.569609 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77509 -39.73672 -37.19429 -35.34178 -34.79013 -32.84186 -31.98405 -30.14772 -28.44583 -26.87291 -25.52939 -23.40742 -21.33622 -20.99560 -20.62730 -19.81965 -17.76092 -17.33730 -16.84007 -16.32796 -15.79711 -15.52213 -15.32488 -15.12201 -14.50240 -14.22212 -14.02951 -13.79951 -13.53626 -13.50901 -12.80975 -12.63285 -12.36045 -12.05851 -11.69221 -11.56811 -11.48603 -10.93481 -10.73608 -10.59323 -10.31450 -10.16675 -9.85214 -9.51187 -9.42495 -9.20385 -9.04327 -8.40381 -8.25416 -5.97937 -4.00339 2.23473 2.68628 2.95702 3.11357 3.31761 3.38416 3.40489 3.87087 3.95780 4.21592 4.46213 4.55385 4.77747 4.83804 5.04541 5.06549 5.09723 5.24791 5.29885 5.37705 5.45708 5.48625 5.65688 5.77004 6.27973 6.37158 6.38598 6.59022 6.61604 7.02918 7.29365 7.50154 7.71377 7.74738 7.86973 7.91536 8.08690 8.21650 8.43772 9.07822 9.63097 11.12916 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019816 B = 0.003627 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.624928 B = 7718.090289 C = 8866.727046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.552 6.552 16 N -0.733 5.733 17 C 0.128 3.872 18 C -0.114 4.114 19 H 0.101 0.899 20 C 0.100 3.900 21 N -0.731 5.731 22 C 0.520 3.480 23 O -0.537 6.537 24 C -0.148 4.148 25 H 0.260 0.740 26 H 0.035 0.965 27 H 0.013 0.987 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.348 0.652 31 H 0.334 0.666 32 H 0.404 0.596 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.412 0.588 38 H 0.107 0.893 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -15.387 6.859 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.335 5.335 14 C 0.269 3.731 15 O -0.430 6.430 16 N -0.386 5.386 17 C 0.004 3.996 18 C -0.133 4.133 19 H 0.119 0.881 20 C -0.025 4.025 21 N -0.387 5.387 22 C 0.306 3.694 23 O -0.414 6.414 24 C -0.189 4.189 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.238 0.762 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.250 0.750 38 H 0.125 0.875 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.720 -15.472 6.577 18.105 hybrid contribution 1.124 0.601 0.542 1.385 sum 7.844 -14.870 7.118 18.257 Atomic orbital electron populations 1.69966 1.05958 1.26466 1.50729 1.24993 0.94801 0.99066 0.95449 0.86656 0.79794 0.83768 0.78106 1.20709 1.21283 1.20024 1.21272 0.92877 0.91324 1.50728 0.92996 1.19018 0.93561 0.89818 0.98221 1.21657 0.98846 0.92173 1.00645 1.21856 0.93521 0.93237 0.95164 0.88383 1.58989 1.26922 1.44323 1.03284 1.22796 0.82130 0.85709 0.82422 1.90659 1.60992 1.54240 1.37076 1.46154 1.46841 1.35022 1.10596 1.21298 0.93605 0.90903 0.93817 1.22427 0.98695 0.94664 0.97562 0.88081 1.22280 0.90260 0.95937 0.94005 1.46265 1.42499 1.08448 1.41458 1.20862 0.83072 0.82430 0.83003 1.90769 1.42031 1.58532 1.50062 1.22341 0.97102 0.99299 1.00175 0.93062 0.94681 0.96868 0.92839 0.92844 0.83788 0.85419 0.76190 0.90823 0.91016 0.90186 0.89493 0.74972 0.87505 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.03 0.75 4.86 -27.88 -0.14 0.62 16 10 C -0.09 -1.77 4.78 -26.73 -0.13 -1.90 16 11 C 0.08 1.18 3.15 -68.86 -0.22 0.97 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 13 N -0.81 -12.74 8.44 -5.65 -0.05 -12.79 16 14 C 0.48 6.63 7.07 -10.99 -0.08 6.55 16 15 O -0.55 -9.25 16.25 5.55 0.09 -9.16 16 16 N -0.73 -7.02 5.44 -60.30 -0.33 -7.35 16 17 C 0.13 1.01 4.96 -4.04 -0.02 0.99 16 18 C -0.11 -0.64 3.18 -88.99 -0.28 -0.92 16 19 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 20 C 0.10 0.58 7.20 -3.09 -0.02 0.56 16 21 N -0.73 -5.33 6.24 -59.16 -0.37 -5.70 16 22 C 0.52 5.01 8.43 -10.86 -0.09 4.92 16 23 O -0.54 -7.56 18.03 5.56 0.10 -7.46 16 24 C -0.15 -0.96 6.42 -26.74 -0.17 -1.13 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.35 5.62 8.58 -39.29 -0.34 5.28 16 31 H 0.33 4.53 9.06 -39.29 -0.36 4.18 16 32 H 0.40 3.04 8.43 -40.82 -0.34 2.70 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.64 8.00 -51.93 -0.42 0.22 16 35 H 0.08 0.51 7.79 -51.93 -0.40 0.10 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.41 2.58 8.96 -40.82 -0.37 2.22 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.11 0.64 7.90 -51.93 -0.41 0.23 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -34.84 330.83 -7.37 -42.21 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.96 Total: 7.06 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.56 Total: -2.43 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.01 Total: -51.40 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.19 Total: -16.61 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.84 -7.37 -42.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691540663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.356 kcal (2) G-P(sol) polarization free energy of solvation -34.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds