Wall clock time and date at job start Mon Mar 30 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48503 * 109.47231 * 270.00132 * 3 2 1 5 5 H 1.48508 * 109.47010 * 30.00115 * 3 2 1 6 6 H 1.48494 * 109.47398 * 150.00068 * 3 2 1 7 7 C 1.37887 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99417 * 0.02562 * 7 2 1 10 10 C 1.53011 * 109.46746 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47134 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46922 * 305.00135 * 11 10 9 13 13 N 1.46906 * 109.46907 * 65.00065 * 11 10 9 14 14 C 1.50698 * 109.47342 * 185.00123 * 11 10 9 15 15 O 1.21283 * 119.99975 * 260.00470 * 14 11 10 16 16 N 1.34773 * 120.00352 * 79.99610 * 14 11 10 17 17 C 1.46496 * 120.00079 * 180.02562 * 16 14 11 18 18 C 1.53002 * 109.46797 * 180.02562 * 17 16 14 19 19 H 1.08999 * 110.85737 * 54.29867 * 18 17 16 20 20 C 1.54482 * 110.97083 * 290.50884 * 18 17 16 21 21 N 1.46826 * 105.44505 * 216.49424 * 20 18 17 22 22 C 1.34420 * 111.31551 * 16.96614 * 21 20 18 23 23 O 1.21275 * 124.94182 * 179.58940 * 22 21 20 24 24 C 1.51284 * 110.11452 * 359.62237 * 22 21 20 25 25 H 0.96991 * 119.99848 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47779 * 60.00146 * 9 7 2 27 27 H 1.08998 * 109.47136 * 299.98973 * 9 7 2 28 28 H 1.09000 * 109.46772 * 59.99639 * 10 9 7 29 29 H 1.08994 * 109.46772 * 299.99892 * 10 9 7 30 30 H 1.00896 * 111.00309 * 59.99727 * 13 11 10 31 31 H 1.00902 * 110.99923 * 183.95891 * 13 11 10 32 32 H 0.97007 * 119.99625 * 0.02562 * 16 14 11 33 33 H 1.09001 * 109.47246 * 299.99806 * 17 16 14 34 34 H 1.09000 * 109.47205 * 60.00688 * 17 16 14 35 35 H 1.09003 * 110.24723 * 335.46596 * 20 18 17 36 36 H 1.08998 * 110.24217 * 97.46881 * 20 18 17 37 37 H 0.96996 * 124.33403 * 197.00160 * 21 20 18 38 38 H 1.09002 * 110.48006 * 225.07193 * 24 22 21 39 39 H 1.08999 * 110.48675 * 102.43012 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 1 0.7884 -5.0075 0.8388 13 7 0.7281 -5.1177 -1.2584 14 6 2.4549 -6.1300 0.1196 15 8 2.7864 -6.7529 -0.8669 16 7 2.9582 -6.4598 1.3255 17 6 3.9061 -7.5704 1.4447 18 6 4.3187 -7.7336 2.9090 19 1 3.4433 -7.8434 3.5490 20 6 5.1965 -6.5494 3.3713 21 7 6.1896 -7.1313 4.2829 22 6 6.2632 -8.4656 4.1379 23 8 7.0068 -9.1922 4.7624 24 6 5.2841 -8.9290 3.0818 25 1 -0.4849 0.8400 0.0004 26 1 0.6247 -2.5564 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8720 -3.6051 0.8873 29 1 2.8719 -3.6036 -0.8927 30 1 1.3476 -5.1015 -2.0546 31 1 0.1637 -5.9541 -1.2563 32 1 2.6929 -5.9617 2.1145 33 1 3.4349 -8.4893 1.0959 34 1 4.7882 -7.3618 0.8394 35 1 5.6928 -6.0912 2.5158 36 1 4.5889 -5.8117 3.8955 37 1 6.7235 -6.6186 4.9097 38 1 4.7423 -9.8105 3.4247 39 1 5.8029 -9.1388 2.1465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691540663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:48 Heat of formation + Delta-G solvation = -122.229528 kcal Electronic energy + Delta-G solvation = -20201.031637 eV Core-core repulsion = 16948.175866 eV Total energy + Delta-G solvation = -3252.855772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48051 -40.77909 -37.99510 -36.74720 -35.70150 -34.76616 -32.66340 -31.86870 -29.19452 -28.09353 -26.69568 -24.86614 -22.33861 -21.93797 -21.50390 -20.97656 -18.71290 -18.34471 -17.94638 -17.73258 -16.97569 -16.64753 -16.35987 -16.06987 -15.96275 -15.32024 -14.91486 -14.85961 -14.47998 -14.23424 -14.15812 -13.80075 -13.51007 -13.39434 -13.18351 -12.78652 -12.48262 -12.21712 -12.17656 -12.02674 -11.71257 -11.59520 -11.20657 -11.06732 -10.92770 -10.45715 -10.14282 -10.07728 -9.55295 -8.11016 -6.20671 1.44146 1.45200 1.51522 1.55014 1.59244 2.18952 2.42788 2.47097 3.22514 3.28351 3.42174 3.65100 3.71696 3.92358 4.09317 4.19039 4.27876 4.39770 4.57850 4.62060 4.71393 4.75845 4.85398 4.90343 5.01874 5.14078 5.32216 5.45311 5.61644 5.79871 5.90389 5.98351 6.03761 6.17477 6.34336 6.51370 6.60275 6.99319 7.19396 7.22507 7.47533 9.00080 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019816 B = 0.003627 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.624928 B = 7718.090289 C = 8866.727046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.081 4.081 11 C 0.083 3.917 12 H 0.113 0.887 13 N -0.823 5.823 14 C 0.490 3.510 15 O -0.583 6.583 16 N -0.714 5.714 17 C 0.130 3.870 18 C -0.098 4.098 19 H 0.121 0.879 20 C 0.096 3.904 21 N -0.723 5.723 22 C 0.511 3.489 23 O -0.591 6.591 24 C -0.142 4.142 25 H 0.261 0.739 26 H 0.002 0.998 27 H -0.004 1.004 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.344 0.656 31 H 0.346 0.654 32 H 0.417 0.583 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.415 0.585 38 H 0.119 0.881 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 -15.381 7.654 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.075 0.925 9 C 0.001 3.999 10 C -0.120 4.120 11 C -0.032 4.032 12 H 0.130 0.870 13 N -0.352 5.352 14 C 0.275 3.725 15 O -0.464 6.464 16 N -0.367 5.367 17 C 0.006 3.994 18 C -0.117 4.117 19 H 0.139 0.861 20 C -0.028 4.028 21 N -0.377 5.377 22 C 0.299 3.701 23 O -0.472 6.472 24 C -0.183 4.183 25 H 0.070 0.930 26 H 0.021 0.979 27 H 0.014 0.986 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.254 0.746 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.254 0.746 38 H 0.137 0.863 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.310 -15.446 7.406 18.625 hybrid contribution 0.922 0.612 0.299 1.147 sum 8.232 -14.834 7.706 18.633 Atomic orbital electron populations 1.70097 1.07623 1.27417 1.51933 1.25880 0.95646 1.02947 0.95157 0.85580 0.78868 0.79183 0.78178 1.20445 1.20972 1.18603 1.21764 0.93421 0.92738 1.50014 0.92462 1.18839 0.93971 0.91407 0.95728 1.21390 0.97646 0.91968 1.00979 1.21667 0.93868 0.92227 0.95464 0.86964 1.58969 1.27373 1.45352 1.03476 1.22269 0.81865 0.85191 0.83155 1.90656 1.61992 1.55287 1.38428 1.45979 1.45918 1.35011 1.09743 1.21361 0.92763 0.90068 0.95168 1.22317 0.99097 0.94044 0.96268 0.86139 1.22438 0.90123 0.96293 0.93924 1.46339 1.42290 1.07944 1.41160 1.21388 0.82891 0.82827 0.82995 1.90738 1.44345 1.59860 1.52217 1.22338 0.96579 0.99984 0.99385 0.93025 0.97908 0.98585 0.90811 0.94111 0.84230 0.84054 0.74636 0.90664 0.91710 0.90330 0.87571 0.74562 0.86312 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -29.44 9.11 25.60 0.23 -29.20 16 8 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.04 1.85 4.86 29.85 0.15 2.00 16 10 C -0.08 -2.95 4.78 30.60 0.15 -2.81 16 11 C 0.08 2.42 3.15 44.17 0.14 2.56 16 12 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 13 N -0.82 -25.66 8.44 -171.80 -1.45 -27.11 16 14 C 0.49 12.43 7.07 87.66 0.62 13.05 16 15 O -0.58 -18.69 16.25 -3.04 -0.05 -18.74 16 16 N -0.71 -11.52 5.44 -463.07 -2.52 -14.04 16 17 C 0.13 1.66 4.96 86.38 0.43 2.09 16 18 C -0.10 -0.78 3.18 -9.74 -0.03 -0.81 16 19 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 20 C 0.10 0.84 7.20 86.82 0.62 1.46 16 21 N -0.72 -9.22 6.24 -459.67 -2.87 -12.09 16 22 C 0.51 9.26 8.43 87.90 0.74 10.00 16 23 O -0.59 -16.66 18.03 -3.02 -0.05 -16.71 16 24 C -0.14 -1.51 6.42 30.59 0.20 -1.32 16 25 H 0.26 14.68 8.31 -92.72 -0.77 13.91 16 26 H 0.00 0.14 7.75 -2.39 -0.02 0.12 16 27 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.34 11.13 8.58 -89.70 -0.77 10.36 16 31 H 0.35 9.15 9.06 -89.69 -0.81 8.34 16 32 H 0.42 4.70 8.43 -92.70 -0.78 3.92 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 0.99 8.00 -2.39 -0.02 0.97 16 35 H 0.08 0.77 7.79 -2.39 -0.02 0.75 16 36 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.42 4.63 8.96 -92.71 -0.83 3.79 16 38 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.12 1.11 7.90 -2.39 -0.02 1.10 16 Total: -1.00 -76.12 330.83 -3.02 -79.14 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -2.10 Total: 21.95 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 3.71 Total: -2.44 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -6.55 Total: -108.35 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.10 Total: -35.45 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -76.12 -3.02 -79.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691540663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.087 kcal (2) G-P(sol) polarization free energy of solvation -76.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds