Wall clock time and date at job start Mon Mar 30 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47319 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46771 * 54.99446 * 12 11 10 14 14 N 1.46900 * 109.46933 * 295.00148 * 12 11 10 15 15 C 1.50696 * 109.47117 * 174.99536 * 12 11 10 16 16 O 1.21287 * 119.99587 * 99.99761 * 15 12 11 17 17 N 1.34776 * 120.00536 * 280.00002 * 15 12 11 18 18 C 1.46499 * 120.00047 * 180.02562 * 17 15 12 19 19 H 1.09002 * 110.85590 * 31.21331 * 18 17 15 20 20 C 1.54481 * 110.96963 * 267.37783 * 18 17 15 21 21 N 1.46764 * 105.47278 * 216.46877 * 20 18 17 22 22 C 1.34425 * 111.30186 * 17.01417 * 21 20 18 23 23 O 1.21280 * 124.94124 * 179.55416 * 22 21 20 24 24 C 1.51283 * 110.11497 * 359.59794 * 22 21 20 25 25 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 27 27 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 28 28 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 29 29 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 30 30 H 1.09009 * 109.47216 * 299.99697 * 11 10 9 31 31 H 1.08998 * 109.47141 * 59.99668 * 11 10 9 32 32 H 1.00902 * 110.99500 * 299.99658 * 14 12 11 33 33 H 1.00895 * 111.00486 * 63.95131 * 14 12 11 34 34 H 0.97003 * 119.99491 * 0.02562 * 17 15 12 35 35 H 1.09000 * 110.24631 * 335.46555 * 20 18 17 36 36 H 1.08995 * 110.24373 * 97.46946 * 20 18 17 37 37 H 0.96998 * 124.35154 * 197.03943 * 21 20 18 38 38 H 1.09000 * 110.47864 * 225.06778 * 24 22 21 39 39 H 1.08998 * 110.48857 * 102.42318 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 6 2.4748 -6.1500 0.0031 13 1 3.1577 -6.0426 0.8459 14 7 3.2398 -6.1422 -1.2510 15 6 1.7253 -7.4515 0.1264 16 8 1.5144 -8.1255 -0.8596 17 7 1.2892 -7.8665 1.3323 18 6 0.5611 -9.1320 1.4521 19 1 0.8994 -9.8470 0.7021 20 6 -0.9636 -8.9043 1.3520 21 7 -1.5648 -9.8615 2.2881 22 6 -0.6545 -10.3299 3.1593 23 8 -0.8854 -11.1270 4.0438 24 6 0.6996 -9.7173 2.8767 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6248 -2.5571 -0.8896 28 1 2.8727 -3.6046 -0.8877 29 1 2.8714 -3.6038 0.8922 30 1 0.8528 -5.0447 0.8906 31 1 0.8548 -5.0449 -0.8894 32 1 2.6286 -6.2404 -2.0478 33 1 3.8015 -5.3075 -1.3268 34 1 1.4575 -7.3271 2.1208 35 1 -1.2125 -7.8841 1.6440 36 1 -1.3086 -9.1018 0.3371 37 1 -2.4988 -10.1228 2.2791 38 1 1.4765 -10.4814 2.9014 39 1 0.9179 -8.9266 3.5945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691571780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:00 Heat of formation + Delta-G solvation = -95.134845 kcal Electronic energy + Delta-G solvation = -20193.636377 eV Core-core repulsion = 16941.955519 eV Total energy + Delta-G solvation = -3251.680858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.94213 -39.71144 -37.04830 -36.12802 -34.38602 -33.73050 -31.27014 -30.72187 -28.10880 -27.43219 -25.17125 -22.93359 -21.78925 -21.16078 -20.62969 -20.25956 -17.97957 -17.62759 -16.90973 -16.73587 -15.86376 -15.24237 -15.15891 -15.02104 -14.61379 -14.11609 -13.94050 -13.79200 -13.65266 -13.49101 -13.36473 -13.06365 -12.47827 -12.19754 -11.84711 -11.60278 -11.31685 -11.13147 -10.79496 -10.41597 -10.19892 -10.04747 -9.98071 -9.77423 -9.57370 -9.44416 -8.80745 -8.51466 -8.40202 -6.43641 -4.13719 2.18340 2.45229 2.68138 2.99685 3.39086 3.40493 3.59441 3.90302 4.01204 4.39791 4.48254 4.52289 4.63583 4.68080 5.01799 5.04075 5.12774 5.12879 5.30046 5.33596 5.43449 5.56371 5.75487 6.04107 6.06697 6.33609 6.35436 6.50198 6.57680 6.78002 6.97692 7.23324 7.27427 7.40004 7.45444 7.82105 8.01267 8.12074 8.37915 8.80338 9.59053 10.96843 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.003208 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.246731 B = 8725.489693 C = 9367.817482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.605 4.605 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.102 4.102 11 C -0.148 4.148 12 C 0.076 3.924 13 H 0.102 0.898 14 N -0.830 5.830 15 C 0.528 3.472 16 O -0.528 6.528 17 N -0.724 5.724 18 C 0.137 3.863 19 H 0.115 0.885 20 C 0.085 3.915 21 N -0.728 5.728 22 C 0.524 3.476 23 O -0.533 6.533 24 C -0.164 4.164 25 H 0.268 0.732 26 H 0.006 0.994 27 H 0.005 0.995 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.349 0.651 33 H 0.353 0.647 34 H 0.406 0.594 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.412 0.588 38 H 0.112 0.888 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.242 -17.179 3.365 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.643 4.643 8 H 0.067 0.933 9 C -0.028 4.028 10 C -0.140 4.140 11 C -0.188 4.188 12 C -0.039 4.039 13 H 0.120 0.880 14 N -0.362 5.362 15 C 0.315 3.685 16 O -0.403 6.403 17 N -0.378 5.378 18 C 0.030 3.970 19 H 0.133 0.867 20 C -0.041 4.041 21 N -0.384 5.384 22 C 0.309 3.691 23 O -0.409 6.409 24 C -0.205 4.205 25 H 0.078 0.922 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.241 0.759 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.251 0.749 38 H 0.130 0.870 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.275 -17.064 3.367 17.439 hybrid contribution -0.779 -0.525 0.133 0.949 sum 0.497 -17.589 3.500 17.941 Atomic orbital electron populations 1.70799 1.06917 1.30547 1.46560 1.25869 0.96540 1.02824 0.93701 0.83553 0.74922 0.75349 0.76556 1.20741 1.21397 1.21406 1.22050 0.94278 0.92055 1.55911 0.93307 1.19203 0.94559 0.93127 0.95899 1.21522 0.98876 0.92904 1.00691 1.22436 0.98380 0.95242 1.02733 1.21431 0.95479 0.90977 0.96029 0.88041 1.58683 1.28127 1.46204 1.03216 1.20814 0.78015 0.87193 0.82492 1.90680 1.56295 1.56396 1.36892 1.45939 1.58448 1.22843 1.10596 1.21713 0.90648 0.87283 0.97341 0.86732 1.22626 0.93510 0.93600 0.94376 1.46228 1.12645 1.45517 1.34028 1.20691 0.87379 0.80349 0.80653 1.90781 1.83201 1.34234 1.32717 1.22667 0.97184 1.03181 0.97461 0.92168 0.97562 0.97631 0.93095 0.92802 0.91598 0.91734 0.83678 0.83177 0.75873 0.90147 0.89346 0.74871 0.87005 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.43 13.65 55.43 0.76 -26.68 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 24.66 29.90 -169.99 -5.08 19.58 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.60 -16.62 9.11 -34.44 -0.31 -16.94 16 8 H 0.05 1.31 7.74 -52.49 -0.41 0.91 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 10 C -0.10 -1.83 4.92 -26.73 -0.13 -1.96 16 11 C -0.15 -2.08 4.84 -26.73 -0.13 -2.21 16 12 C 0.08 0.90 3.21 -68.86 -0.22 0.68 16 13 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 14 N -0.83 -10.43 8.94 -5.65 -0.05 -10.48 16 15 C 0.53 6.18 7.08 -10.99 -0.08 6.10 16 16 O -0.53 -7.90 15.89 5.55 0.09 -7.82 16 17 N -0.72 -5.87 5.15 -52.22 -0.27 -6.14 16 18 C 0.14 1.02 3.53 -66.29 -0.23 0.79 16 19 H 0.11 0.99 7.54 -51.93 -0.39 0.60 16 20 C 0.08 0.60 7.52 -3.12 -0.02 0.58 16 21 N -0.73 -5.48 6.24 -59.20 -0.37 -5.85 16 22 C 0.52 5.06 8.43 -10.86 -0.09 4.97 16 23 O -0.53 -7.40 18.03 5.56 0.10 -7.30 16 24 C -0.16 -1.10 6.58 -26.74 -0.18 -1.28 16 25 H 0.27 7.99 7.22 -40.82 -0.29 7.70 16 26 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 27 H 0.01 0.14 8.01 -51.93 -0.42 -0.28 16 28 H 0.05 0.90 6.87 -51.93 -0.36 0.54 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.35 4.57 8.58 -39.29 -0.34 4.23 16 33 H 0.35 4.23 7.55 -39.29 -0.30 3.93 16 34 H 0.41 2.42 8.44 -40.82 -0.34 2.08 16 35 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.41 2.59 8.96 -40.82 -0.37 2.22 16 38 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.11 0.59 7.81 -51.93 -0.41 0.19 16 LS Contribution 327.73 15.07 4.94 4.94 Total: -1.00 -34.68 327.73 -7.29 -41.96 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.78 Total: 6.64 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.62 Total: -8.86 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.07 Total: -49.14 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.19 Total: -15.12 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.08 Total: 19.58 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.68 -7.29 -41.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691571780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.172 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds