Wall clock time and date at job start Mon Mar 30 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47319 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46771 * 54.99446 * 12 11 10 14 14 N 1.46900 * 109.46933 * 295.00148 * 12 11 10 15 15 C 1.50696 * 109.47117 * 174.99536 * 12 11 10 16 16 O 1.21287 * 119.99587 * 99.99761 * 15 12 11 17 17 N 1.34776 * 120.00536 * 280.00002 * 15 12 11 18 18 C 1.46499 * 120.00047 * 180.02562 * 17 15 12 19 19 H 1.09002 * 110.85590 * 31.21331 * 18 17 15 20 20 C 1.54481 * 110.96963 * 267.37783 * 18 17 15 21 21 N 1.46764 * 105.47278 * 216.46877 * 20 18 17 22 22 C 1.34425 * 111.30186 * 17.01417 * 21 20 18 23 23 O 1.21280 * 124.94124 * 179.55416 * 22 21 20 24 24 C 1.51283 * 110.11497 * 359.59794 * 22 21 20 25 25 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 27 27 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 28 28 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 29 29 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 30 30 H 1.09009 * 109.47216 * 299.99697 * 11 10 9 31 31 H 1.08998 * 109.47141 * 59.99668 * 11 10 9 32 32 H 1.00902 * 110.99500 * 299.99658 * 14 12 11 33 33 H 1.00895 * 111.00486 * 63.95131 * 14 12 11 34 34 H 0.97003 * 119.99491 * 0.02562 * 17 15 12 35 35 H 1.09000 * 110.24631 * 335.46555 * 20 18 17 36 36 H 1.08995 * 110.24373 * 97.46946 * 20 18 17 37 37 H 0.96998 * 124.35154 * 197.03943 * 21 20 18 38 38 H 1.09000 * 110.47864 * 225.06778 * 24 22 21 39 39 H 1.08998 * 110.48857 * 102.42318 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 6 2.4748 -6.1500 0.0031 13 1 3.1577 -6.0426 0.8459 14 7 3.2398 -6.1422 -1.2510 15 6 1.7253 -7.4515 0.1264 16 8 1.5144 -8.1255 -0.8596 17 7 1.2892 -7.8665 1.3323 18 6 0.5611 -9.1320 1.4521 19 1 0.8994 -9.8470 0.7021 20 6 -0.9636 -8.9043 1.3520 21 7 -1.5648 -9.8615 2.2881 22 6 -0.6545 -10.3299 3.1593 23 8 -0.8854 -11.1270 4.0438 24 6 0.6996 -9.7173 2.8767 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6248 -2.5571 -0.8896 28 1 2.8727 -3.6046 -0.8877 29 1 2.8714 -3.6038 0.8922 30 1 0.8528 -5.0447 0.8906 31 1 0.8548 -5.0449 -0.8894 32 1 2.6286 -6.2404 -2.0478 33 1 3.8015 -5.3075 -1.3268 34 1 1.4575 -7.3271 2.1208 35 1 -1.2125 -7.8841 1.6440 36 1 -1.3086 -9.1018 0.3371 37 1 -2.4988 -10.1228 2.2791 38 1 1.4765 -10.4814 2.9014 39 1 0.9179 -8.9266 3.5945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691571780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:59 Heat of formation + Delta-G solvation = -124.291565 kcal Electronic energy + Delta-G solvation = -20194.900707 eV Core-core repulsion = 16941.955519 eV Total energy + Delta-G solvation = -3252.945188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.69576 -40.61116 -37.94713 -37.33603 -35.54863 -35.17903 -32.88028 -31.40853 -29.24264 -28.39850 -26.60745 -24.53819 -22.69825 -22.06036 -21.80913 -21.13263 -19.00729 -18.69016 -18.43304 -17.60226 -16.67623 -16.23759 -16.13783 -15.95758 -15.69963 -15.64592 -15.15348 -14.92444 -14.82109 -14.51846 -14.28154 -14.11290 -13.79925 -13.37936 -12.89664 -12.76348 -12.63403 -12.45752 -12.42458 -11.97889 -11.70567 -11.57208 -11.25379 -10.92338 -10.62943 -10.53714 -10.30228 -10.17938 -9.68306 -8.67594 -6.38793 1.43630 1.53395 1.54508 1.61461 1.80418 1.92397 2.34365 2.57559 3.16710 3.26887 3.38248 3.63615 3.69867 3.88178 3.93327 3.97140 4.06890 4.34673 4.47625 4.50485 4.57413 4.68423 4.76297 4.81095 4.91173 5.03571 5.09145 5.35110 5.45330 5.53992 5.69179 5.91024 6.01531 6.04720 6.20581 6.45352 6.47848 6.59481 7.11698 7.17476 7.43549 8.73191 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.003208 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.246731 B = 8725.489693 C = 9367.817482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.041 4.041 3 Si 1.115 2.885 4 H -0.287 1.287 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.619 4.619 8 H 0.054 0.946 9 C 0.007 3.993 10 C -0.090 4.090 11 C -0.135 4.135 12 C 0.084 3.916 13 H 0.125 0.875 14 N -0.834 5.834 15 C 0.530 3.470 16 O -0.564 6.564 17 N -0.706 5.706 18 C 0.139 3.861 19 H 0.106 0.894 20 C 0.087 3.913 21 N -0.719 5.719 22 C 0.518 3.482 23 O -0.581 6.581 24 C -0.152 4.152 25 H 0.255 0.745 26 H -0.010 1.010 27 H -0.018 1.018 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.345 0.655 33 H 0.356 0.644 34 H 0.420 0.580 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.418 0.582 38 H 0.122 0.878 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 -17.130 3.967 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.239 4.239 3 Si 0.936 3.064 4 H -0.213 1.213 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.657 4.657 8 H 0.072 0.928 9 C -0.030 4.030 10 C -0.128 4.128 11 C -0.175 4.175 12 C -0.032 4.032 13 H 0.142 0.858 14 N -0.366 5.366 15 C 0.317 3.683 16 O -0.441 6.441 17 N -0.360 5.360 18 C 0.033 3.967 19 H 0.124 0.876 20 C -0.038 4.038 21 N -0.374 5.374 22 C 0.305 3.695 23 O -0.462 6.462 24 C -0.192 4.192 25 H 0.064 0.936 26 H 0.009 0.991 27 H 0.000 1.000 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.258 0.742 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.257 0.743 38 H 0.140 0.860 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.768 -17.019 3.982 17.697 hybrid contribution -1.278 -0.556 -0.073 1.396 sum 1.490 -17.576 3.909 18.066 Atomic orbital electron populations 1.70933 1.08064 1.29841 1.49027 1.27406 0.96603 1.06970 0.92880 0.82960 0.74148 0.71154 0.78112 1.21257 1.19150 1.19466 1.22559 0.94869 0.93546 1.54703 0.92798 1.19181 0.95213 0.94685 0.93904 1.21327 0.97691 0.92445 1.01310 1.22247 0.98410 0.94189 1.02658 1.21403 0.95133 0.90078 0.96556 0.85757 1.58708 1.28144 1.46316 1.03410 1.20731 0.77815 0.86900 0.82902 1.90676 1.57719 1.57401 1.38288 1.45760 1.57251 1.22927 1.10077 1.21676 0.90672 0.86706 0.97643 0.87632 1.22632 0.93222 0.93672 0.94304 1.46253 1.12894 1.44880 1.33354 1.21144 0.88639 0.79702 0.80032 1.90758 1.84107 1.36485 1.34807 1.22632 0.95680 1.03790 0.97116 0.93560 0.99135 1.00015 0.92806 0.91796 0.90454 0.93163 0.84127 0.82876 0.74217 0.89516 0.89165 0.74270 0.85975 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 13.65 21.45 0.29 -57.09 16 2 C -0.04 -2.34 5.46 84.65 0.46 -1.88 16 3 Si 1.12 48.71 29.90 68.60 2.05 50.76 16 4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.62 -33.80 9.11 25.60 0.23 -33.56 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.01 0.35 4.28 29.85 0.13 0.48 16 10 C -0.09 -3.10 4.92 30.59 0.15 -2.95 16 11 C -0.14 -3.56 4.84 30.59 0.15 -3.41 16 12 C 0.08 1.77 3.21 44.17 0.14 1.91 16 13 H 0.12 2.11 8.14 -2.39 -0.02 2.10 16 14 N -0.83 -19.51 8.94 -171.80 -1.54 -21.05 16 15 C 0.53 11.25 7.08 87.66 0.62 11.87 16 16 O -0.56 -16.11 15.89 -3.05 -0.05 -16.16 16 17 N -0.71 -9.50 5.15 -437.52 -2.25 -11.75 16 18 C 0.14 1.78 3.53 46.05 0.16 1.95 16 19 H 0.11 1.65 7.54 -2.39 -0.02 1.63 16 20 C 0.09 1.09 7.52 86.83 0.65 1.74 16 21 N -0.72 -9.92 6.24 -459.80 -2.87 -12.79 16 22 C 0.52 9.41 8.43 87.90 0.74 10.15 16 23 O -0.58 -16.02 18.03 -3.03 -0.05 -16.08 16 24 C -0.15 -1.68 6.58 30.59 0.20 -1.48 16 25 H 0.25 15.67 7.22 -92.70 -0.67 15.00 16 26 H -0.01 -0.49 8.01 -2.39 -0.02 -0.51 16 27 H -0.02 -0.97 8.01 -2.39 -0.02 -0.99 16 28 H 0.05 1.81 6.87 -2.39 -0.02 1.80 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.35 8.68 8.58 -89.69 -0.77 7.91 16 33 H 0.36 7.86 7.55 -89.70 -0.68 7.18 16 34 H 0.42 3.50 8.44 -92.71 -0.78 2.71 16 35 H 0.09 1.03 8.07 -2.39 -0.02 1.01 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.42 4.87 8.96 -92.71 -0.83 4.03 16 38 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.13 0.96 7.81 -2.39 -0.02 0.94 16 Total: -1.00 -75.57 327.73 -2.63 -78.20 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -1.86 Total: 21.15 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 3.64 Total: -15.19 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -6.36 Total: -102.68 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.10 Total: -32.24 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.05 Total: 50.76 kcal Total: -75.57 -2.63 -78.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691571780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.092 kcal (2) G-P(sol) polarization free energy of solvation -75.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds