Wall clock time and date at job start Mon Mar 30 2020 05:23:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 120.00450 * 2 1
4 4 H 1.48495 * 109.47183 * 269.99917 * 3 2 1
5 5 H 1.48505 * 109.46754 * 29.99827 * 3 2 1
6 6 H 1.48496 * 109.47450 * 149.99539 * 3 2 1
7 7 C 1.37884 * 120.00011 * 179.97438 * 2 1 3
8 8 H 1.08009 * 119.99406 * 0.02562 * 7 2 1
9 9 C 1.50696 * 120.00180 * 180.02562 * 7 2 1
10 10 C 1.52997 * 109.46998 * 180.02562 * 9 7 2
11 11 C 1.53004 * 109.47236 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47236 * 180.02562 * 11 10 9
13 13 H 1.09002 * 109.47153 * 304.99767 * 12 11 10
14 14 N 1.46899 * 109.47254 * 64.99771 * 12 11 10
15 15 C 1.50699 * 109.47078 * 184.99974 * 12 11 10
16 16 O 1.21284 * 119.99882 * 259.99965 * 15 12 11
17 17 N 1.34777 * 120.00049 * 79.99684 * 15 12 11
18 18 C 1.46500 * 119.99951 * 180.02562 * 17 15 12
19 19 H 1.08996 * 110.85589 * 31.21116 * 18 17 15
20 20 C 1.54476 * 110.96954 * 155.00260 * 18 17 15
21 21 N 1.46761 * 105.47712 * 143.53335 * 20 18 17
22 22 C 1.34419 * 111.29994 * 342.98470 * 21 20 18
23 23 O 1.21283 * 124.94535 * 180.44227 * 22 21 20
24 24 C 1.51283 * 110.11496 * 0.40691 * 22 21 20
25 25 H 0.96996 * 119.99577 * 0.02562 * 1 2 3
26 26 H 1.08993 * 109.47368 * 59.99838 * 9 7 2
27 27 H 1.09004 * 109.46725 * 299.99544 * 9 7 2
28 28 H 1.09001 * 109.47630 * 59.99680 * 10 9 7
29 29 H 1.09004 * 109.47346 * 299.99550 * 10 9 7
30 30 H 1.09001 * 109.46917 * 59.99433 * 11 10 9
31 31 H 1.09004 * 109.46741 * 300.00111 * 11 10 9
32 32 H 1.00893 * 111.00096 * 296.05084 * 14 12 11
33 33 H 1.00903 * 110.99833 * 59.99705 * 14 12 11
34 34 H 0.96998 * 120.00255 * 0.02562 * 17 15 12
35 35 H 1.09006 * 110.24545 * 262.53321 * 20 18 17
36 36 H 1.08996 * 110.24932 * 24.53099 * 20 18 17
37 37 H 0.96996 * 124.35318 * 163.00421 * 21 20 18
38 38 H 1.08999 * 110.48676 * 257.57632 * 24 22 21
39 39 H 1.08998 * 110.48812 * 134.93162 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4969 2.0463 -1.4000
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4401 0.7001
7 6 2.0046 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0005
9 6 3.5116 -1.1942 0.0011
10 6 4.0215 -2.6366 0.0010
11 6 5.5515 -2.6368 0.0009
12 6 6.0614 -4.0793 0.0002
13 1 5.6268 -4.6187 0.8418
14 7 5.6727 -4.7354 -1.2553
15 6 7.5633 -4.0812 0.1239
16 8 8.2528 -4.2337 -0.8621
17 7 8.1403 -3.9134 1.3304
18 6 9.6004 -3.9147 1.4506
19 1 10.0644 -3.5185 0.5474
20 6 10.0531 -3.1234 2.6976
21 7 11.2156 -3.8499 3.2217
22 6 11.2794 -5.0956 2.7208
23 8 12.1349 -5.9110 2.9932
24 6 10.1282 -5.3330 1.7684
25 1 -0.4849 0.8400 -0.0004
26 1 3.8746 -0.6801 0.8910
27 1 3.8752 -0.6806 -0.8889
28 1 3.6585 -3.1504 -0.8892
29 1 3.6578 -3.1507 0.8908
30 1 5.9149 -2.1229 0.8909
31 1 5.9148 -2.1228 -0.8891
32 1 4.6690 -4.8043 -1.3316
33 1 6.0635 -4.2536 -2.0512
34 1 7.5889 -3.7917 2.1190
35 1 10.3370 -2.1088 2.4180
36 1 9.2558 -3.1015 3.4405
37 1 11.8556 -3.4789 3.8491
38 1 9.3527 -5.9298 2.2485
39 1 10.4794 -5.8218 0.8597
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000691571781.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:02
Heat of formation + Delta-G solvation = -87.208807 kcal
Electronic energy + Delta-G solvation = -20158.260277 eV
Core-core repulsion = 16906.923118 eV
Total energy + Delta-G solvation = -3251.337159 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.95345 -39.70463 -37.08047 -36.12906 -34.36527 -33.42026 -31.54085 -30.65951
-28.39842 -27.80516 -25.57427 -22.80807 -21.71411 -21.05542 -20.37748 -20.27759
-17.88461 -17.64843 -16.96875 -16.77533 -15.87304 -15.26346 -15.13304 -14.99671
-14.62224 -14.38368 -14.08115 -13.89006 -13.74394 -13.48303 -13.29521 -12.68236
-12.56970 -12.19682 -12.10217 -11.71764 -11.50641 -11.11522 -10.85841 -10.49871
-10.18278 -10.02337 -9.86688 -9.65171 -9.60908 -9.42108 -9.29488 -8.64487
-8.60958 -6.12372 -4.11194 2.18917 2.47111 2.62373 2.99218 3.23614
3.31562 3.33237 3.83698 4.08894 4.37121 4.39546 4.48956 4.62497
4.69254 4.96401 5.01181 5.04908 5.12732 5.21598 5.40899 5.45016
5.56120 5.73301 6.02930 6.07108 6.30149 6.34204 6.46037 6.51941
6.73309 6.99362 7.15696 7.24296 7.28875 7.48047 7.70152 7.80374
8.02723 8.44484 8.92091 9.49862 11.01024
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.028750 B = 0.003269 C = 0.003050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 973.671828 B = 8564.458883 C = 9177.779005
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.066 3.934
3 Si 0.881 3.119
4 H -0.277 1.277
5 H -0.288 1.288
6 H -0.267 1.267
7 C -0.524 4.524
8 H 0.072 0.928
9 C -0.013 4.013
10 C -0.102 4.102
11 C -0.150 4.150
12 C 0.077 3.923
13 H 0.103 0.897
14 N -0.830 5.830
15 C 0.528 3.472
16 O -0.527 6.527
17 N -0.725 5.725
18 C 0.136 3.864
19 H 0.114 0.886
20 C 0.095 3.905
21 N -0.731 5.731
22 C 0.524 3.476
23 O -0.532 6.532
24 C -0.170 4.170
25 H 0.263 0.737
26 H 0.015 0.985
27 H 0.010 0.990
28 H 0.054 0.946
29 H 0.058 0.942
30 H 0.066 0.934
31 H 0.064 0.936
32 H 0.354 0.646
33 H 0.349 0.651
34 H 0.405 0.595
35 H 0.091 0.909
36 H 0.081 0.919
37 H 0.413 0.587
38 H 0.111 0.889
39 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.791 -5.653 5.866 20.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.135 4.135
3 Si 0.708 3.292
4 H -0.203 1.203
5 H -0.214 1.214
6 H -0.191 1.191
7 C -0.561 4.561
8 H 0.090 0.910
9 C -0.050 4.050
10 C -0.139 4.139
11 C -0.190 4.190
12 C -0.039 4.039
13 H 0.120 0.880
14 N -0.363 5.363
15 C 0.315 3.685
16 O -0.401 6.401
17 N -0.379 5.379
18 C 0.029 3.971
19 H 0.132 0.868
20 C -0.031 4.031
21 N -0.388 5.388
22 C 0.310 3.690
23 O -0.408 6.408
24 C -0.212 4.212
25 H 0.073 0.927
26 H 0.033 0.967
27 H 0.028 0.972
28 H 0.073 0.927
29 H 0.077 0.923
30 H 0.085 0.915
31 H 0.083 0.917
32 H 0.170 0.830
33 H 0.163 0.837
34 H 0.241 0.759
35 H 0.109 0.891
36 H 0.099 0.901
37 H 0.252 0.748
38 H 0.129 0.871
39 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 19.880 -6.777 5.457 21.701
hybrid contribution -0.242 2.217 0.517 2.289
sum 19.638 -4.560 5.975 21.027
Atomic orbital electron populations
1.69914 1.06315 1.26959 1.50919 1.25051 0.94737 0.99219 0.94523
0.86768 0.80248 0.83642 0.78519 1.20311 1.21361 1.19124 1.21138
0.89478 0.94472 1.51058 0.91025 1.19552 0.97195 0.92060 0.96204
1.21486 0.90786 1.00381 1.01288 1.22462 0.99224 0.94543 1.02798
1.21423 0.90475 0.95877 0.96096 0.87960 1.58673 1.17050 1.57420
1.03149 1.20813 0.90816 0.74495 0.82397 1.90685 1.64909 1.47533
1.36997 1.45907 1.05834 1.75659 1.10542 1.21699 0.81994 0.94298
0.99066 0.86802 1.22310 0.88813 0.96588 0.95346 1.46188 1.29217
1.15048 1.48320 1.20854 0.85859 0.81512 0.80820 1.90775 1.39462
1.47974 1.62573 1.22858 0.98017 0.99225 1.01091 0.92674 0.96668
0.97193 0.92704 0.92349 0.91490 0.91682 0.83049 0.83674 0.75946
0.89075 0.90126 0.74822 0.87109 0.87261
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16
2 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16
3 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16
4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16
7 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16
8 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16
9 C -0.01 -0.28 4.04 -27.89 -0.11 -0.39 16
10 C -0.10 -1.71 4.92 -26.73 -0.13 -1.84 16
11 C -0.15 -1.96 4.84 -26.73 -0.13 -2.09 16
12 C 0.08 0.86 3.21 -68.87 -0.22 0.64 16
13 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16
14 N -0.83 -10.16 8.94 -5.66 -0.05 -10.21 16
15 C 0.53 5.99 7.08 -10.99 -0.08 5.92 16
16 O -0.53 -7.84 15.89 5.55 0.09 -7.75 16
17 N -0.73 -5.47 5.15 -52.23 -0.27 -5.74 16
18 C 0.14 0.95 3.53 -66.30 -0.23 0.72 16
19 H 0.11 0.96 7.54 -51.93 -0.39 0.57 16
20 C 0.09 0.44 7.51 -3.13 -0.02 0.41 16
21 N -0.73 -4.57 6.24 -59.20 -0.37 -4.94 16
22 C 0.52 5.05 8.43 -10.86 -0.09 4.96 16
23 O -0.53 -7.48 18.03 5.55 0.10 -7.38 16
24 C -0.17 -1.37 6.59 -26.74 -0.18 -1.55 16
25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
26 H 0.02 0.33 7.20 -51.93 -0.37 -0.04 16
27 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16
28 H 0.05 0.92 6.87 -51.93 -0.36 0.56 16
29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.35 4.13 7.55 -39.30 -0.30 3.83 16
33 H 0.35 4.44 8.58 -39.29 -0.34 4.10 16
34 H 0.41 2.07 8.43 -40.82 -0.34 1.73 16
35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16
36 H 0.08 0.26 7.80 -51.93 -0.40 -0.14 16
37 H 0.41 1.99 8.96 -40.82 -0.37 1.62 16
38 H 0.11 0.82 8.08 -51.93 -0.42 0.40 16
39 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16
LS Contribution 325.43 15.07 4.90 4.90
Total: -1.00 -34.87 325.43 -6.93 -41.80
By element:
Atomic # 1 Polarization: 11.23 SS G_CDS: -5.81 Total: 5.43 kcal
Atomic # 6 Polarization: -4.41 SS G_CDS: -1.63 Total: -6.03 kcal
Atomic # 7 Polarization: -47.36 SS G_CDS: 0.08 Total: -47.28 kcal
Atomic # 8 Polarization: -15.32 SS G_CDS: 0.19 Total: -15.13 kcal
Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -34.87 -6.93 -41.80 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691571781.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.413 kcal
(2) G-P(sol) polarization free energy of solvation -34.871 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.209 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds