Wall clock time and date at job start Mon Mar 30 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00450 * 2 1 4 4 H 1.48495 * 109.47183 * 269.99917 * 3 2 1 5 5 H 1.48505 * 109.46754 * 29.99827 * 3 2 1 6 6 H 1.48496 * 109.47450 * 149.99539 * 3 2 1 7 7 C 1.37884 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99406 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47236 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47153 * 304.99767 * 12 11 10 14 14 N 1.46899 * 109.47254 * 64.99771 * 12 11 10 15 15 C 1.50699 * 109.47078 * 184.99974 * 12 11 10 16 16 O 1.21284 * 119.99882 * 259.99965 * 15 12 11 17 17 N 1.34777 * 120.00049 * 79.99684 * 15 12 11 18 18 C 1.46500 * 119.99951 * 180.02562 * 17 15 12 19 19 H 1.08996 * 110.85589 * 31.21116 * 18 17 15 20 20 C 1.54476 * 110.96954 * 155.00260 * 18 17 15 21 21 N 1.46761 * 105.47712 * 143.53335 * 20 18 17 22 22 C 1.34419 * 111.29994 * 342.98470 * 21 20 18 23 23 O 1.21283 * 124.94535 * 180.44227 * 22 21 20 24 24 C 1.51283 * 110.11496 * 0.40691 * 22 21 20 25 25 H 0.96996 * 119.99577 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47368 * 59.99838 * 9 7 2 27 27 H 1.09004 * 109.46725 * 299.99544 * 9 7 2 28 28 H 1.09001 * 109.47630 * 59.99680 * 10 9 7 29 29 H 1.09004 * 109.47346 * 299.99550 * 10 9 7 30 30 H 1.09001 * 109.46917 * 59.99433 * 11 10 9 31 31 H 1.09004 * 109.46741 * 300.00111 * 11 10 9 32 32 H 1.00893 * 111.00096 * 296.05084 * 14 12 11 33 33 H 1.00903 * 110.99833 * 59.99705 * 14 12 11 34 34 H 0.96998 * 120.00255 * 0.02562 * 17 15 12 35 35 H 1.09006 * 110.24545 * 262.53321 * 20 18 17 36 36 H 1.08996 * 110.24932 * 24.53099 * 20 18 17 37 37 H 0.96996 * 124.35318 * 163.00421 * 21 20 18 38 38 H 1.08999 * 110.48676 * 257.57632 * 24 22 21 39 39 H 1.08998 * 110.48812 * 134.93162 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6368 0.0009 12 6 6.0614 -4.0793 0.0002 13 1 5.6268 -4.6187 0.8418 14 7 5.6727 -4.7354 -1.2553 15 6 7.5633 -4.0812 0.1239 16 8 8.2528 -4.2337 -0.8621 17 7 8.1403 -3.9134 1.3304 18 6 9.6004 -3.9147 1.4506 19 1 10.0644 -3.5185 0.5474 20 6 10.0531 -3.1234 2.6976 21 7 11.2156 -3.8499 3.2217 22 6 11.2794 -5.0956 2.7208 23 8 12.1349 -5.9110 2.9932 24 6 10.1282 -5.3330 1.7684 25 1 -0.4849 0.8400 -0.0004 26 1 3.8746 -0.6801 0.8910 27 1 3.8752 -0.6806 -0.8889 28 1 3.6585 -3.1504 -0.8892 29 1 3.6578 -3.1507 0.8908 30 1 5.9149 -2.1229 0.8909 31 1 5.9148 -2.1228 -0.8891 32 1 4.6690 -4.8043 -1.3316 33 1 6.0635 -4.2536 -2.0512 34 1 7.5889 -3.7917 2.1190 35 1 10.3370 -2.1088 2.4180 36 1 9.2558 -3.1015 3.4405 37 1 11.8556 -3.4789 3.8491 38 1 9.3527 -5.9298 2.2485 39 1 10.4794 -5.8218 0.8597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691571781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:02 Heat of formation + Delta-G solvation = -87.208807 kcal Electronic energy + Delta-G solvation = -20158.260277 eV Core-core repulsion = 16906.923118 eV Total energy + Delta-G solvation = -3251.337159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95345 -39.70463 -37.08047 -36.12906 -34.36527 -33.42026 -31.54085 -30.65951 -28.39842 -27.80516 -25.57427 -22.80807 -21.71411 -21.05542 -20.37748 -20.27759 -17.88461 -17.64843 -16.96875 -16.77533 -15.87304 -15.26346 -15.13304 -14.99671 -14.62224 -14.38368 -14.08115 -13.89006 -13.74394 -13.48303 -13.29521 -12.68236 -12.56970 -12.19682 -12.10217 -11.71764 -11.50641 -11.11522 -10.85841 -10.49871 -10.18278 -10.02337 -9.86688 -9.65171 -9.60908 -9.42108 -9.29488 -8.64487 -8.60958 -6.12372 -4.11194 2.18917 2.47111 2.62373 2.99218 3.23614 3.31562 3.33237 3.83698 4.08894 4.37121 4.39546 4.48956 4.62497 4.69254 4.96401 5.01181 5.04908 5.12732 5.21598 5.40899 5.45016 5.56120 5.73301 6.02930 6.07108 6.30149 6.34204 6.46037 6.51941 6.73309 6.99362 7.15696 7.24296 7.28875 7.48047 7.70152 7.80374 8.02723 8.44484 8.92091 9.49862 11.01024 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028750 B = 0.003269 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.671828 B = 8564.458883 C = 9177.779005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.102 4.102 11 C -0.150 4.150 12 C 0.077 3.923 13 H 0.103 0.897 14 N -0.830 5.830 15 C 0.528 3.472 16 O -0.527 6.527 17 N -0.725 5.725 18 C 0.136 3.864 19 H 0.114 0.886 20 C 0.095 3.905 21 N -0.731 5.731 22 C 0.524 3.476 23 O -0.532 6.532 24 C -0.170 4.170 25 H 0.263 0.737 26 H 0.015 0.985 27 H 0.010 0.990 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.354 0.646 33 H 0.349 0.651 34 H 0.405 0.595 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.413 0.587 38 H 0.111 0.889 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.791 -5.653 5.866 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.139 4.139 11 C -0.190 4.190 12 C -0.039 4.039 13 H 0.120 0.880 14 N -0.363 5.363 15 C 0.315 3.685 16 O -0.401 6.401 17 N -0.379 5.379 18 C 0.029 3.971 19 H 0.132 0.868 20 C -0.031 4.031 21 N -0.388 5.388 22 C 0.310 3.690 23 O -0.408 6.408 24 C -0.212 4.212 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.241 0.759 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.252 0.748 38 H 0.129 0.871 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.880 -6.777 5.457 21.701 hybrid contribution -0.242 2.217 0.517 2.289 sum 19.638 -4.560 5.975 21.027 Atomic orbital electron populations 1.69914 1.06315 1.26959 1.50919 1.25051 0.94737 0.99219 0.94523 0.86768 0.80248 0.83642 0.78519 1.20311 1.21361 1.19124 1.21138 0.89478 0.94472 1.51058 0.91025 1.19552 0.97195 0.92060 0.96204 1.21486 0.90786 1.00381 1.01288 1.22462 0.99224 0.94543 1.02798 1.21423 0.90475 0.95877 0.96096 0.87960 1.58673 1.17050 1.57420 1.03149 1.20813 0.90816 0.74495 0.82397 1.90685 1.64909 1.47533 1.36997 1.45907 1.05834 1.75659 1.10542 1.21699 0.81994 0.94298 0.99066 0.86802 1.22310 0.88813 0.96588 0.95346 1.46188 1.29217 1.15048 1.48320 1.20854 0.85859 0.81512 0.80820 1.90775 1.39462 1.47974 1.62573 1.22858 0.98017 0.99225 1.01091 0.92674 0.96668 0.97193 0.92704 0.92349 0.91490 0.91682 0.83049 0.83674 0.75946 0.89075 0.90126 0.74822 0.87109 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16 8 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 9 C -0.01 -0.28 4.04 -27.89 -0.11 -0.39 16 10 C -0.10 -1.71 4.92 -26.73 -0.13 -1.84 16 11 C -0.15 -1.96 4.84 -26.73 -0.13 -2.09 16 12 C 0.08 0.86 3.21 -68.87 -0.22 0.64 16 13 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 14 N -0.83 -10.16 8.94 -5.66 -0.05 -10.21 16 15 C 0.53 5.99 7.08 -10.99 -0.08 5.92 16 16 O -0.53 -7.84 15.89 5.55 0.09 -7.75 16 17 N -0.73 -5.47 5.15 -52.23 -0.27 -5.74 16 18 C 0.14 0.95 3.53 -66.30 -0.23 0.72 16 19 H 0.11 0.96 7.54 -51.93 -0.39 0.57 16 20 C 0.09 0.44 7.51 -3.13 -0.02 0.41 16 21 N -0.73 -4.57 6.24 -59.20 -0.37 -4.94 16 22 C 0.52 5.05 8.43 -10.86 -0.09 4.96 16 23 O -0.53 -7.48 18.03 5.55 0.10 -7.38 16 24 C -0.17 -1.37 6.59 -26.74 -0.18 -1.55 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.33 7.20 -51.93 -0.37 -0.04 16 27 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 28 H 0.05 0.92 6.87 -51.93 -0.36 0.56 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.35 4.13 7.55 -39.30 -0.30 3.83 16 33 H 0.35 4.44 8.58 -39.29 -0.34 4.10 16 34 H 0.41 2.07 8.43 -40.82 -0.34 1.73 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.26 7.80 -51.93 -0.40 -0.14 16 37 H 0.41 1.99 8.96 -40.82 -0.37 1.62 16 38 H 0.11 0.82 8.08 -51.93 -0.42 0.40 16 39 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -34.87 325.43 -6.93 -41.80 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.81 Total: 5.43 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.63 Total: -6.03 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.08 Total: -47.28 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.19 Total: -15.13 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.87 -6.93 -41.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691571781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.413 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds