Wall clock time and date at job start Mon Mar 30 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00450 * 2 1 4 4 H 1.48495 * 109.47183 * 269.99917 * 3 2 1 5 5 H 1.48505 * 109.46754 * 29.99827 * 3 2 1 6 6 H 1.48496 * 109.47450 * 149.99539 * 3 2 1 7 7 C 1.37884 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99406 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47236 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47153 * 304.99767 * 12 11 10 14 14 N 1.46899 * 109.47254 * 64.99771 * 12 11 10 15 15 C 1.50699 * 109.47078 * 184.99974 * 12 11 10 16 16 O 1.21284 * 119.99882 * 259.99965 * 15 12 11 17 17 N 1.34777 * 120.00049 * 79.99684 * 15 12 11 18 18 C 1.46500 * 119.99951 * 180.02562 * 17 15 12 19 19 H 1.08996 * 110.85589 * 31.21116 * 18 17 15 20 20 C 1.54476 * 110.96954 * 155.00260 * 18 17 15 21 21 N 1.46761 * 105.47712 * 143.53335 * 20 18 17 22 22 C 1.34419 * 111.29994 * 342.98470 * 21 20 18 23 23 O 1.21283 * 124.94535 * 180.44227 * 22 21 20 24 24 C 1.51283 * 110.11496 * 0.40691 * 22 21 20 25 25 H 0.96996 * 119.99577 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47368 * 59.99838 * 9 7 2 27 27 H 1.09004 * 109.46725 * 299.99544 * 9 7 2 28 28 H 1.09001 * 109.47630 * 59.99680 * 10 9 7 29 29 H 1.09004 * 109.47346 * 299.99550 * 10 9 7 30 30 H 1.09001 * 109.46917 * 59.99433 * 11 10 9 31 31 H 1.09004 * 109.46741 * 300.00111 * 11 10 9 32 32 H 1.00893 * 111.00096 * 296.05084 * 14 12 11 33 33 H 1.00903 * 110.99833 * 59.99705 * 14 12 11 34 34 H 0.96998 * 120.00255 * 0.02562 * 17 15 12 35 35 H 1.09006 * 110.24545 * 262.53321 * 20 18 17 36 36 H 1.08996 * 110.24932 * 24.53099 * 20 18 17 37 37 H 0.96996 * 124.35318 * 163.00421 * 21 20 18 38 38 H 1.08999 * 110.48676 * 257.57632 * 24 22 21 39 39 H 1.08998 * 110.48812 * 134.93162 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6368 0.0009 12 6 6.0614 -4.0793 0.0002 13 1 5.6268 -4.6187 0.8418 14 7 5.6727 -4.7354 -1.2553 15 6 7.5633 -4.0812 0.1239 16 8 8.2528 -4.2337 -0.8621 17 7 8.1403 -3.9134 1.3304 18 6 9.6004 -3.9147 1.4506 19 1 10.0644 -3.5185 0.5474 20 6 10.0531 -3.1234 2.6976 21 7 11.2156 -3.8499 3.2217 22 6 11.2794 -5.0956 2.7208 23 8 12.1349 -5.9110 2.9932 24 6 10.1282 -5.3330 1.7684 25 1 -0.4849 0.8400 -0.0004 26 1 3.8746 -0.6801 0.8910 27 1 3.8752 -0.6806 -0.8889 28 1 3.6585 -3.1504 -0.8892 29 1 3.6578 -3.1507 0.8908 30 1 5.9149 -2.1229 0.8909 31 1 5.9148 -2.1228 -0.8891 32 1 4.6690 -4.8043 -1.3316 33 1 6.0635 -4.2536 -2.0512 34 1 7.5889 -3.7917 2.1190 35 1 10.3370 -2.1088 2.4180 36 1 9.2558 -3.1015 3.4405 37 1 11.8556 -3.4789 3.8491 38 1 9.3527 -5.9298 2.2485 39 1 10.4794 -5.8218 0.8597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691571781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:02 Heat of formation + Delta-G solvation = -117.591759 kcal Electronic energy + Delta-G solvation = -20159.577781 eV Core-core repulsion = 16906.923118 eV Total energy + Delta-G solvation = -3252.654663 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65584 -40.56241 -37.90696 -37.24324 -35.18336 -35.10485 -33.21736 -31.33162 -29.66401 -28.56628 -26.80648 -24.11326 -22.49607 -21.85430 -21.64353 -21.18889 -18.86467 -18.59430 -18.47316 -17.63619 -16.61897 -16.39462 -16.10638 -16.07600 -15.81692 -15.62150 -15.00927 -14.83559 -14.63820 -14.36355 -14.24222 -14.08837 -13.77807 -13.69245 -13.01716 -12.84686 -12.54131 -12.37894 -12.34046 -11.76687 -11.67633 -11.40941 -11.30938 -11.28002 -10.76381 -10.74473 -10.20507 -10.13327 -9.61291 -8.27438 -6.31340 1.38057 1.38753 1.45067 1.50478 1.60392 1.95283 2.37584 2.40445 3.08612 3.27832 3.49467 3.70874 3.73836 3.91513 3.99196 4.05937 4.15939 4.43623 4.52021 4.56979 4.63052 4.79390 4.80498 4.86472 5.02832 5.11679 5.16576 5.41017 5.57000 5.63968 5.70192 5.75512 5.92706 6.11827 6.30934 6.51495 6.54081 6.78305 7.15282 7.24472 7.33770 8.89347 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028750 B = 0.003269 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.671828 B = 8564.458883 C = 9177.779005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.531 4.531 8 H 0.033 0.967 9 C -0.013 4.013 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.081 3.919 13 H 0.123 0.877 14 N -0.838 5.838 15 C 0.529 3.471 16 O -0.566 6.566 17 N -0.705 5.705 18 C 0.137 3.863 19 H 0.101 0.899 20 C 0.101 3.899 21 N -0.716 5.716 22 C 0.519 3.481 23 O -0.585 6.585 24 C -0.167 4.167 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.012 0.988 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.355 0.645 33 H 0.346 0.654 34 H 0.421 0.579 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.422 0.578 38 H 0.120 0.880 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.369 -4.273 7.108 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.569 4.569 8 H 0.051 0.949 9 C -0.050 4.050 10 C -0.132 4.132 11 C -0.176 4.176 12 C -0.034 4.034 13 H 0.140 0.860 14 N -0.370 5.370 15 C 0.316 3.684 16 O -0.444 6.444 17 N -0.359 5.359 18 C 0.031 3.969 19 H 0.119 0.881 20 C -0.024 4.024 21 N -0.371 5.371 22 C 0.306 3.694 23 O -0.465 6.465 24 C -0.208 4.208 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.260 0.740 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.262 0.738 38 H 0.138 0.862 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.456 -5.368 6.751 23.125 hybrid contribution -0.814 1.726 0.136 1.913 sum 20.643 -3.642 6.887 22.064 Atomic orbital electron populations 1.70081 1.08418 1.28070 1.52943 1.26069 0.95583 1.03673 0.94331 0.85649 0.79709 0.78240 0.78957 1.19745 1.21328 1.16324 1.21577 0.92491 0.92972 1.49901 0.94908 1.19539 0.93486 0.95562 0.96444 1.21334 0.93608 0.97012 1.01282 1.22276 0.95997 0.95919 1.03450 1.21427 0.90731 0.94902 0.96325 0.85968 1.58690 1.17146 1.57611 1.03554 1.20772 0.90578 0.74203 0.82852 1.90682 1.65546 1.49581 1.38580 1.45704 1.06266 1.73962 1.10013 1.21678 0.81378 0.93918 0.99931 0.88059 1.22464 0.88715 0.96634 0.94569 1.46171 1.29591 1.13940 1.47447 1.21065 0.85487 0.81977 0.80883 1.90746 1.41470 1.49799 1.64528 1.22796 0.97754 1.00043 1.00214 0.92645 0.95729 0.97009 0.93284 0.92048 0.89401 0.92483 0.82922 0.84084 0.74045 0.86851 0.87519 0.73776 0.86236 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 3 Si 0.95 42.37 27.47 68.60 1.88 44.26 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 7 C -0.53 -29.08 9.66 25.60 0.25 -28.83 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 10 C -0.09 -2.99 4.92 30.59 0.15 -2.84 16 11 C -0.14 -3.13 4.84 30.59 0.15 -2.98 16 12 C 0.08 1.62 3.21 44.17 0.14 1.76 16 13 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 14 N -0.84 -19.35 8.94 -171.81 -1.54 -20.89 16 15 C 0.53 10.70 7.08 87.66 0.62 11.32 16 16 O -0.57 -16.11 15.89 -3.04 -0.05 -16.16 16 17 N -0.71 -8.27 5.15 -437.54 -2.25 -10.52 16 18 C 0.14 1.57 3.53 46.05 0.16 1.73 16 19 H 0.10 1.51 7.54 -2.39 -0.02 1.49 16 20 C 0.10 0.53 7.51 86.83 0.65 1.18 16 21 N -0.72 -7.14 6.24 -459.81 -2.87 -10.01 16 22 C 0.52 9.47 8.43 87.90 0.74 10.22 16 23 O -0.59 -16.59 18.03 -3.04 -0.05 -16.65 16 24 C -0.17 -2.47 6.59 30.59 0.20 -2.27 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 27 H 0.01 0.49 7.57 -2.38 -0.02 0.47 16 28 H 0.05 1.59 6.87 -2.39 -0.02 1.58 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.36 7.91 7.55 -89.70 -0.68 7.23 16 33 H 0.35 8.48 8.58 -89.69 -0.77 7.71 16 34 H 0.42 2.39 8.43 -92.71 -0.78 1.61 16 35 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 36 H 0.11 0.12 7.80 -2.39 -0.02 0.10 16 37 H 0.42 3.00 8.96 -92.71 -0.83 2.17 16 38 H 0.12 1.55 8.08 -2.39 -0.02 1.53 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -78.06 325.43 -2.94 -81.00 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -2.01 Total: 18.01 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 3.65 Total: -10.69 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -6.36 Total: -99.77 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.10 Total: -32.81 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.26 kcal Total: -78.06 -2.94 -81.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691571781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.590 kcal (2) G-P(sol) polarization free energy of solvation -78.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds