Wall clock time and date at job start Mon Mar 30 2020 05:23:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 120.00450 * 2 1
4 4 H 1.48495 * 109.47183 * 269.99917 * 3 2 1
5 5 H 1.48505 * 109.46754 * 29.99827 * 3 2 1
6 6 H 1.48496 * 109.47450 * 149.99539 * 3 2 1
7 7 C 1.37884 * 120.00011 * 179.97438 * 2 1 3
8 8 H 1.08009 * 119.99406 * 0.02562 * 7 2 1
9 9 C 1.50696 * 120.00180 * 180.02562 * 7 2 1
10 10 C 1.52997 * 109.46998 * 180.02562 * 9 7 2
11 11 C 1.53004 * 109.47236 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47236 * 180.02562 * 11 10 9
13 13 H 1.09002 * 109.47153 * 304.99767 * 12 11 10
14 14 N 1.46899 * 109.47254 * 64.99771 * 12 11 10
15 15 C 1.50699 * 109.47078 * 184.99974 * 12 11 10
16 16 O 1.21284 * 119.99882 * 259.99965 * 15 12 11
17 17 N 1.34777 * 120.00049 * 79.99684 * 15 12 11
18 18 C 1.46500 * 119.99951 * 180.02562 * 17 15 12
19 19 H 1.08996 * 110.85589 * 31.21116 * 18 17 15
20 20 C 1.54476 * 110.96954 * 155.00260 * 18 17 15
21 21 N 1.46761 * 105.47712 * 143.53335 * 20 18 17
22 22 C 1.34419 * 111.29994 * 342.98470 * 21 20 18
23 23 O 1.21283 * 124.94535 * 180.44227 * 22 21 20
24 24 C 1.51283 * 110.11496 * 0.40691 * 22 21 20
25 25 H 0.96996 * 119.99577 * 0.02562 * 1 2 3
26 26 H 1.08993 * 109.47368 * 59.99838 * 9 7 2
27 27 H 1.09004 * 109.46725 * 299.99544 * 9 7 2
28 28 H 1.09001 * 109.47630 * 59.99680 * 10 9 7
29 29 H 1.09004 * 109.47346 * 299.99550 * 10 9 7
30 30 H 1.09001 * 109.46917 * 59.99433 * 11 10 9
31 31 H 1.09004 * 109.46741 * 300.00111 * 11 10 9
32 32 H 1.00893 * 111.00096 * 296.05084 * 14 12 11
33 33 H 1.00903 * 110.99833 * 59.99705 * 14 12 11
34 34 H 0.96998 * 120.00255 * 0.02562 * 17 15 12
35 35 H 1.09006 * 110.24545 * 262.53321 * 20 18 17
36 36 H 1.08996 * 110.24932 * 24.53099 * 20 18 17
37 37 H 0.96996 * 124.35318 * 163.00421 * 21 20 18
38 38 H 1.08999 * 110.48676 * 257.57632 * 24 22 21
39 39 H 1.08998 * 110.48812 * 134.93162 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4969 2.0463 -1.4000
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4401 0.7001
7 6 2.0046 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0005
9 6 3.5116 -1.1942 0.0011
10 6 4.0215 -2.6366 0.0010
11 6 5.5515 -2.6368 0.0009
12 6 6.0614 -4.0793 0.0002
13 1 5.6268 -4.6187 0.8418
14 7 5.6727 -4.7354 -1.2553
15 6 7.5633 -4.0812 0.1239
16 8 8.2528 -4.2337 -0.8621
17 7 8.1403 -3.9134 1.3304
18 6 9.6004 -3.9147 1.4506
19 1 10.0644 -3.5185 0.5474
20 6 10.0531 -3.1234 2.6976
21 7 11.2156 -3.8499 3.2217
22 6 11.2794 -5.0956 2.7208
23 8 12.1349 -5.9110 2.9932
24 6 10.1282 -5.3330 1.7684
25 1 -0.4849 0.8400 -0.0004
26 1 3.8746 -0.6801 0.8910
27 1 3.8752 -0.6806 -0.8889
28 1 3.6585 -3.1504 -0.8892
29 1 3.6578 -3.1507 0.8908
30 1 5.9149 -2.1229 0.8909
31 1 5.9148 -2.1228 -0.8891
32 1 4.6690 -4.8043 -1.3316
33 1 6.0635 -4.2536 -2.0512
34 1 7.5889 -3.7917 2.1190
35 1 10.3370 -2.1088 2.4180
36 1 9.2558 -3.1015 3.4405
37 1 11.8556 -3.4789 3.8491
38 1 9.3527 -5.9298 2.2485
39 1 10.4794 -5.8218 0.8597
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000691571781.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:02
Heat of formation + Delta-G solvation = -117.591759 kcal
Electronic energy + Delta-G solvation = -20159.577781 eV
Core-core repulsion = 16906.923118 eV
Total energy + Delta-G solvation = -3252.654663 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.65584 -40.56241 -37.90696 -37.24324 -35.18336 -35.10485 -33.21736 -31.33162
-29.66401 -28.56628 -26.80648 -24.11326 -22.49607 -21.85430 -21.64353 -21.18889
-18.86467 -18.59430 -18.47316 -17.63619 -16.61897 -16.39462 -16.10638 -16.07600
-15.81692 -15.62150 -15.00927 -14.83559 -14.63820 -14.36355 -14.24222 -14.08837
-13.77807 -13.69245 -13.01716 -12.84686 -12.54131 -12.37894 -12.34046 -11.76687
-11.67633 -11.40941 -11.30938 -11.28002 -10.76381 -10.74473 -10.20507 -10.13327
-9.61291 -8.27438 -6.31340 1.38057 1.38753 1.45067 1.50478 1.60392
1.95283 2.37584 2.40445 3.08612 3.27832 3.49467 3.70874 3.73836
3.91513 3.99196 4.05937 4.15939 4.43623 4.52021 4.56979 4.63052
4.79390 4.80498 4.86472 5.02832 5.11679 5.16576 5.41017 5.57000
5.63968 5.70192 5.75512 5.92706 6.11827 6.30934 6.51495 6.54081
6.78305 7.15282 7.24472 7.33770 8.89347
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.028750 B = 0.003269 C = 0.003050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 973.671828 B = 8564.458883 C = 9177.779005
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.954 5.954
2 C 0.000 4.000
3 Si 0.951 3.049
4 H -0.272 1.272
5 H -0.287 1.287
6 H -0.240 1.240
7 C -0.531 4.531
8 H 0.033 0.967
9 C -0.013 4.013
10 C -0.095 4.095
11 C -0.137 4.137
12 C 0.081 3.919
13 H 0.123 0.877
14 N -0.838 5.838
15 C 0.529 3.471
16 O -0.566 6.566
17 N -0.705 5.705
18 C 0.137 3.863
19 H 0.101 0.899
20 C 0.101 3.899
21 N -0.716 5.716
22 C 0.519 3.481
23 O -0.585 6.585
24 C -0.167 4.167
25 H 0.265 0.735
26 H 0.024 0.976
27 H 0.012 0.988
28 H 0.048 0.952
29 H 0.061 0.939
30 H 0.087 0.913
31 H 0.056 0.944
32 H 0.355 0.645
33 H 0.346 0.654
34 H 0.421 0.579
35 H 0.113 0.887
36 H 0.107 0.893
37 H 0.422 0.578
38 H 0.120 0.880
39 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.369 -4.273 7.108 21.993
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.595 5.595
2 C -0.197 4.197
3 Si 0.774 3.226
4 H -0.197 1.197
5 H -0.213 1.213
6 H -0.163 1.163
7 C -0.569 4.569
8 H 0.051 0.949
9 C -0.050 4.050
10 C -0.132 4.132
11 C -0.176 4.176
12 C -0.034 4.034
13 H 0.140 0.860
14 N -0.370 5.370
15 C 0.316 3.684
16 O -0.444 6.444
17 N -0.359 5.359
18 C 0.031 3.969
19 H 0.119 0.881
20 C -0.024 4.024
21 N -0.371 5.371
22 C 0.306 3.694
23 O -0.465 6.465
24 C -0.208 4.208
25 H 0.074 0.926
26 H 0.043 0.957
27 H 0.030 0.970
28 H 0.067 0.933
29 H 0.080 0.920
30 H 0.106 0.894
31 H 0.075 0.925
32 H 0.171 0.829
33 H 0.159 0.841
34 H 0.260 0.740
35 H 0.131 0.869
36 H 0.125 0.875
37 H 0.262 0.738
38 H 0.138 0.862
39 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 21.456 -5.368 6.751 23.125
hybrid contribution -0.814 1.726 0.136 1.913
sum 20.643 -3.642 6.887 22.064
Atomic orbital electron populations
1.70081 1.08418 1.28070 1.52943 1.26069 0.95583 1.03673 0.94331
0.85649 0.79709 0.78240 0.78957 1.19745 1.21328 1.16324 1.21577
0.92491 0.92972 1.49901 0.94908 1.19539 0.93486 0.95562 0.96444
1.21334 0.93608 0.97012 1.01282 1.22276 0.95997 0.95919 1.03450
1.21427 0.90731 0.94902 0.96325 0.85968 1.58690 1.17146 1.57611
1.03554 1.20772 0.90578 0.74203 0.82852 1.90682 1.65546 1.49581
1.38580 1.45704 1.06266 1.73962 1.10013 1.21678 0.81378 0.93918
0.99931 0.88059 1.22464 0.88715 0.96634 0.94569 1.46171 1.29591
1.13940 1.47447 1.21065 0.85487 0.81977 0.80883 1.90746 1.41470
1.49799 1.64528 1.22796 0.97754 1.00043 1.00214 0.92645 0.95729
0.97009 0.93284 0.92048 0.89401 0.92483 0.82922 0.84084 0.74045
0.86851 0.87519 0.73776 0.86236 0.88737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16
2 C 0.00 -0.01 5.47 84.66 0.46 0.45 16
3 Si 0.95 42.37 27.47 68.60 1.88 44.26 16
4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
5 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16
6 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16
7 C -0.53 -29.08 9.66 25.60 0.25 -28.83 16
8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16
9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16
10 C -0.09 -2.99 4.92 30.59 0.15 -2.84 16
11 C -0.14 -3.13 4.84 30.59 0.15 -2.98 16
12 C 0.08 1.62 3.21 44.17 0.14 1.76 16
13 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16
14 N -0.84 -19.35 8.94 -171.81 -1.54 -20.89 16
15 C 0.53 10.70 7.08 87.66 0.62 11.32 16
16 O -0.57 -16.11 15.89 -3.04 -0.05 -16.16 16
17 N -0.71 -8.27 5.15 -437.54 -2.25 -10.52 16
18 C 0.14 1.57 3.53 46.05 0.16 1.73 16
19 H 0.10 1.51 7.54 -2.39 -0.02 1.49 16
20 C 0.10 0.53 7.51 86.83 0.65 1.18 16
21 N -0.72 -7.14 6.24 -459.81 -2.87 -10.01 16
22 C 0.52 9.47 8.43 87.90 0.74 10.22 16
23 O -0.59 -16.59 18.03 -3.04 -0.05 -16.65 16
24 C -0.17 -2.47 6.59 30.59 0.20 -2.27 16
25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16
26 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16
27 H 0.01 0.49 7.57 -2.38 -0.02 0.47 16
28 H 0.05 1.59 6.87 -2.39 -0.02 1.58 16
29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
32 H 0.36 7.91 7.55 -89.70 -0.68 7.23 16
33 H 0.35 8.48 8.58 -89.69 -0.77 7.71 16
34 H 0.42 2.39 8.43 -92.71 -0.78 1.61 16
35 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16
36 H 0.11 0.12 7.80 -2.39 -0.02 0.10 16
37 H 0.42 3.00 8.96 -92.71 -0.83 2.17 16
38 H 0.12 1.55 8.08 -2.39 -0.02 1.53 16
39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16
Total: -1.00 -78.06 325.43 -2.94 -81.00
By element:
Atomic # 1 Polarization: 20.02 SS G_CDS: -2.01 Total: 18.01 kcal
Atomic # 6 Polarization: -14.33 SS G_CDS: 3.65 Total: -10.69 kcal
Atomic # 7 Polarization: -93.41 SS G_CDS: -6.36 Total: -99.77 kcal
Atomic # 8 Polarization: -32.71 SS G_CDS: -0.10 Total: -32.81 kcal
Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.26 kcal
Total: -78.06 -2.94 -81.00 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691571781.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.590 kcal
(2) G-P(sol) polarization free energy of solvation -78.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.651 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.941 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.592 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds