Wall clock time and date at job start Mon Mar 30 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.17109 * 2 1 4 4 C 1.52990 * 109.21405 * 240.64225 * 2 1 3 5 5 N 1.47272 * 108.18747 * 286.38864 * 4 2 1 6 6 C 1.34775 * 121.35162 * 118.47560 * 5 4 2 7 7 O 1.21286 * 120.00064 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99977 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.47188 * 40.00225 * 8 6 5 10 10 N 1.46905 * 109.47125 * 160.00003 * 8 6 5 11 11 C 1.53001 * 109.47213 * 279.99847 * 8 6 5 12 12 C 1.52995 * 109.47332 * 174.99878 * 11 8 6 13 13 C 1.50694 * 109.47452 * 180.02562 * 12 11 8 14 14 H 1.08004 * 119.99671 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00375 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00342 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99936 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47208 * 89.99869 * 17 15 13 19 19 H 1.48490 * 109.47220 * 210.00376 * 17 15 13 20 20 H 1.48499 * 109.46982 * 330.00334 * 17 15 13 21 21 C 1.47045 * 117.29094 * 298.74770 * 5 4 2 22 22 C 1.50065 * 109.09393 * 42.38510 * 21 5 4 23 23 O 1.21283 * 118.50311 * 167.44030 * 22 21 5 24 24 N 1.33385 * 123.01408 * 347.66123 * 22 21 5 25 25 H 1.09000 * 109.46823 * 179.35814 * 1 2 3 26 26 H 1.09005 * 109.46914 * 299.35682 * 1 2 3 27 27 H 1.09000 * 109.47234 * 59.35760 * 1 2 3 28 28 H 1.09005 * 109.71833 * 166.71427 * 4 2 1 29 29 H 1.09005 * 109.75630 * 46.08668 * 4 2 1 30 30 H 1.00901 * 110.99869 * 296.04907 * 10 8 6 31 31 H 1.00896 * 110.99543 * 60.00030 * 10 8 6 32 32 H 1.08997 * 109.47039 * 295.00606 * 11 8 6 33 33 H 1.09001 * 109.46723 * 55.00082 * 11 8 6 34 34 H 1.09001 * 109.46974 * 300.00562 * 12 11 8 35 35 H 1.09004 * 109.46840 * 59.99935 * 12 11 8 36 36 H 0.96996 * 120.00272 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.56424 * 162.31007 * 21 5 4 38 38 H 1.08998 * 109.56945 * 282.66185 * 21 5 4 39 39 H 0.97002 * 117.70957 * 184.10299 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8880 1.0296 0.0000 4 6 2.0335 -0.7083 -1.2591 5 7 1.8120 -2.1547 -1.0926 6 6 1.0072 -2.8415 -1.9275 7 8 0.4476 -2.2686 -2.8383 8 6 0.8027 -4.3213 -1.7292 9 1 0.7194 -4.5371 -0.6641 10 7 -0.4286 -4.7412 -2.4117 11 6 1.9943 -5.0835 -2.3124 12 6 1.8476 -6.5744 -2.0017 13 6 3.0216 -7.3250 -2.5755 14 1 3.7948 -6.7920 -3.1089 15 6 3.1081 -8.6923 -2.4205 16 7 4.1323 -9.3475 -2.9217 17 14 1.7704 -9.6143 -1.4985 18 1 0.7143 -10.0388 -2.4522 19 1 2.3558 -10.8113 -0.8431 20 1 1.1775 -8.7255 -0.4671 21 6 2.4998 -2.8178 0.0252 22 6 2.4112 -1.9454 1.2430 23 8 2.7150 -2.4189 2.3174 24 7 2.0094 -0.6743 1.1987 25 1 -0.3633 -1.0276 -0.0115 26 1 -0.3633 0.5038 0.8957 27 1 -0.3634 0.5238 -0.8842 28 1 3.0976 -0.5119 -1.3910 29 1 1.4829 -0.3495 -2.1288 30 1 -1.2379 -4.3000 -2.0013 31 1 -0.3761 -4.5516 -3.4013 32 1 2.0249 -4.9387 -3.3923 33 1 2.9171 -4.7091 -1.8693 34 1 1.8169 -6.7191 -0.9217 35 1 0.9247 -6.9488 -2.4447 36 1 4.1930 -10.3094 -2.8129 37 1 2.0245 -3.7774 0.2285 38 1 3.5473 -2.9746 -0.2321 39 1 2.0390 -0.1629 2.0225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691574470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:28 Heat of formation + Delta-G solvation = -99.683970 kcal Electronic energy + Delta-G solvation = -21409.539520 eV Core-core repulsion = 18157.661397 eV Total energy + Delta-G solvation = -3251.878123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.04265 -40.48872 -38.05832 -36.89484 -35.62045 -34.78003 -32.31446 -32.24293 -29.04500 -28.98325 -27.47509 -24.95562 -23.65888 -22.17017 -21.09766 -19.93853 -19.05338 -18.65961 -18.28010 -17.73382 -16.89156 -16.75796 -16.46869 -16.13189 -15.85550 -15.52978 -15.05651 -14.93459 -14.67065 -14.40758 -14.08364 -13.73008 -13.57491 -13.43371 -13.06306 -12.81871 -12.60972 -12.46476 -12.39501 -11.97967 -11.82637 -11.62750 -11.48974 -11.25336 -11.09246 -10.70072 -10.29775 -9.85950 -9.69604 -8.24009 -6.26749 1.36582 1.38016 1.42286 1.42629 1.55425 1.65048 2.17656 2.41879 3.13045 3.27353 3.33497 3.55295 3.65451 3.83921 3.95468 4.11745 4.21052 4.22416 4.39951 4.54427 4.67754 4.68832 4.78521 4.79956 4.82113 5.10545 5.14451 5.23397 5.50519 5.65393 5.72893 5.73659 5.93862 6.12920 6.14318 6.33347 6.48319 6.81778 6.90804 7.03106 7.37929 8.92784 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.004957 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.150550 B = 5647.537023 C = 6159.444196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.138 0.862 4 C 0.089 3.911 5 N -0.608 5.608 6 C 0.499 3.501 7 O -0.564 6.564 8 C 0.079 3.921 9 H 0.111 0.889 10 N -0.817 5.817 11 C -0.079 4.079 12 C 0.001 3.999 13 C -0.529 4.529 14 H 0.031 0.969 15 C 0.005 3.995 16 N -0.954 5.954 17 Si 0.949 3.051 18 H -0.271 1.271 19 H -0.288 1.288 20 H -0.244 1.244 21 C 0.090 3.910 22 C 0.518 3.482 23 O -0.587 6.587 24 N -0.700 5.700 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.349 0.651 31 H 0.349 0.651 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 22.901 7.406 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.156 0.844 4 C -0.033 4.033 5 N -0.343 5.343 6 C 0.286 3.714 7 O -0.442 6.442 8 C -0.037 4.037 9 H 0.128 0.872 10 N -0.347 5.347 11 C -0.118 4.118 12 C -0.036 4.036 13 C -0.567 4.567 14 H 0.050 0.950 15 C -0.191 4.191 16 N -0.595 5.595 17 Si 0.773 3.227 18 H -0.196 1.196 19 H -0.214 1.214 20 H -0.167 1.167 21 C -0.036 4.036 22 C 0.304 3.696 23 O -0.467 6.467 24 N -0.351 5.351 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.059 21.936 7.470 24.535 hybrid contribution -0.135 0.314 0.084 0.352 sum -8.194 22.250 7.554 24.885 Atomic orbital electron populations 1.22213 0.94692 1.01493 1.03566 1.21534 0.94847 0.98149 0.83163 0.84417 1.22289 1.03400 0.78750 0.98904 1.48233 1.46639 1.09929 1.29501 1.22239 0.77186 0.91209 0.80762 1.90653 1.49595 1.71364 1.32608 1.21725 0.93251 0.87421 1.01277 0.87152 1.58999 1.02855 1.64056 1.08757 1.21269 0.94881 0.95834 0.99770 1.19375 0.95435 0.92498 0.96299 1.21541 1.07481 0.92832 1.34823 0.95026 1.25951 0.97973 0.98850 0.96339 1.70068 1.32555 1.08761 1.48147 0.85672 0.79158 0.78038 0.79837 1.19592 1.21412 1.16744 1.21997 1.01634 0.97002 0.82964 1.20229 0.75995 0.83223 0.90168 1.90815 1.51885 1.73124 1.30900 1.45455 1.64302 1.11316 1.14031 0.94968 0.90792 0.90296 0.88404 0.87278 0.83785 0.83734 0.93535 0.91444 0.96131 0.95384 0.92682 0.86006 0.86070 0.75460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.38 71.98 0.68 -1.21 16 2 C 0.13 1.26 3.87 45.15 0.17 1.44 16 3 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 4 C 0.09 1.27 5.89 86.23 0.51 1.77 16 5 N -0.61 -12.50 2.73 -823.94 -2.25 -14.75 16 6 C 0.50 13.10 6.96 87.66 0.61 13.71 16 7 O -0.56 -17.14 15.73 -3.05 -0.05 -17.19 16 8 C 0.08 2.27 2.34 44.17 0.10 2.37 16 9 H 0.11 2.93 6.43 -2.39 -0.02 2.92 16 10 N -0.82 -23.26 8.44 -171.80 -1.45 -24.71 16 11 C -0.08 -2.90 4.72 30.59 0.14 -2.75 16 12 C 0.00 0.06 3.93 29.84 0.12 0.18 16 13 C -0.53 -30.27 9.66 25.60 0.25 -30.02 16 14 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 15 C 0.01 0.31 5.47 84.66 0.46 0.77 16 16 N -0.95 -60.40 13.96 21.45 0.30 -60.11 16 17 Si 0.95 45.07 27.47 68.60 1.88 46.96 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.24 -10.72 6.54 99.48 0.65 -10.07 16 21 C 0.09 1.88 5.59 85.33 0.48 2.36 16 22 C 0.52 11.22 7.83 87.67 0.69 11.91 16 23 O -0.59 -17.79 17.80 -3.04 -0.05 -17.84 16 24 N -0.70 -9.86 5.00 -446.82 -2.24 -12.09 16 25 H 0.03 0.56 7.97 -2.39 -0.02 0.54 16 26 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.11 1.71 6.99 -2.38 -0.02 1.69 16 30 H 0.35 8.31 9.06 -89.69 -0.81 7.50 16 31 H 0.35 10.24 8.58 -89.70 -0.77 9.47 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 2.34 7.38 -2.39 -0.02 2.33 16 34 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 35 H 0.03 1.29 7.18 -2.38 -0.02 1.27 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.12 2.75 5.74 -2.39 -0.01 2.74 16 38 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.41 4.67 8.80 -92.71 -0.82 3.85 16 Total: -1.00 -75.65 317.99 -1.01 -76.66 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -1.36 Total: 22.53 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 4.21 Total: 0.54 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -5.64 Total: -111.66 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.10 Total: -35.03 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -75.65 -1.01 -76.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691574470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.021 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds