Wall clock time and date at job start Mon Mar 30 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.21376 * 2 1 4 4 C 1.52982 * 109.18245 * 119.36228 * 2 1 3 5 5 N 1.47271 * 108.18951 * 167.03480 * 4 2 1 6 6 C 1.34771 * 121.35151 * 118.47233 * 5 4 2 7 7 O 1.21282 * 120.00450 * 0.02562 * 6 5 4 8 8 C 1.50710 * 119.99903 * 180.02562 * 6 5 4 9 9 H 1.08994 * 109.46562 * 319.99886 * 8 6 5 10 10 N 1.46897 * 109.46953 * 200.00275 * 8 6 5 11 11 C 1.52996 * 109.47109 * 80.00344 * 8 6 5 12 12 C 1.53001 * 109.46766 * 185.00352 * 11 8 6 13 13 C 1.50705 * 109.46811 * 179.97438 * 12 11 8 14 14 H 1.07996 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99876 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00092 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00124 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47157 * 89.99690 * 17 15 13 19 19 H 1.48502 * 109.47109 * 210.00198 * 17 15 13 20 20 H 1.48507 * 109.46916 * 329.99988 * 17 15 13 21 21 C 1.47052 * 117.29289 * 298.50181 * 5 4 2 22 22 C 1.50438 * 108.89076 * 42.73463 * 21 5 4 23 23 O 1.21282 * 118.48517 * 167.31598 * 22 21 5 24 24 N 1.33375 * 123.02577 * 347.28707 * 22 21 5 25 25 H 1.09000 * 109.47332 * 179.37136 * 1 2 3 26 26 H 1.08999 * 109.47486 * 299.37365 * 1 2 3 27 27 H 1.09003 * 109.47338 * 59.38029 * 1 2 3 28 28 H 1.08998 * 109.72231 * 286.70955 * 4 2 1 29 29 H 1.09006 * 109.71969 * 47.36461 * 4 2 1 30 30 H 1.00900 * 111.00308 * 176.04388 * 10 8 6 31 31 H 1.00904 * 111.00189 * 299.99497 * 10 8 6 32 32 H 1.09004 * 109.46971 * 304.99806 * 11 8 6 33 33 H 1.08994 * 109.47261 * 64.99819 * 11 8 6 34 34 H 1.08996 * 109.46684 * 299.99274 * 12 11 8 35 35 H 1.08994 * 109.47665 * 59.99714 * 12 11 8 36 36 H 0.96997 * 120.00230 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.56640 * 162.55703 * 21 5 4 38 38 H 1.09004 * 109.56221 * 282.79025 * 21 5 4 39 39 H 0.96996 * 117.70878 * 184.60613 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0326 -0.7085 1.2593 5 7 3.4714 -0.9753 1.0933 6 6 4.3845 -0.4413 1.9285 7 8 4.0273 0.2750 2.8397 8 6 5.8495 -0.7342 1.7301 9 1 5.9764 -1.7808 1.4534 10 7 6.5758 -0.4662 2.9785 11 6 6.4019 0.1583 0.6170 12 6 7.8550 -0.2249 0.3300 13 6 8.3990 0.6539 -0.7669 14 1 7.7709 1.4097 -1.2147 15 6 9.6985 0.4929 -1.1986 16 7 10.1733 1.2601 -2.1555 17 14 10.7846 -0.8150 -0.4245 18 1 10.6398 -2.0873 -1.1763 19 1 12.2013 -0.3719 -0.4693 20 1 10.3762 -1.0252 0.9878 21 6 3.8713 -1.8475 -0.0210 22 6 3.0777 -1.4718 -1.2426 23 8 3.4252 -1.9147 -2.3169 24 7 2.0093 -0.6747 -1.1986 25 1 -0.3634 -1.0276 -0.0113 26 1 -0.3634 0.5041 0.8955 27 1 -0.3634 0.5234 -0.8844 28 1 1.8748 -0.0699 2.1284 29 1 1.4970 -1.6487 1.3909 30 1 7.5495 -0.7160 2.8912 31 1 6.4735 0.4984 3.2564 32 1 5.8057 0.0243 -0.2857 33 1 6.3562 1.2011 0.9310 34 1 8.4511 -0.0908 1.2326 35 1 7.9007 -1.2676 0.0159 36 1 11.0874 1.1466 -2.4595 37 1 4.9347 -1.7180 -0.2224 38 1 3.6731 -2.8871 0.2399 39 1 1.5146 -0.5377 -2.0216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691574471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:31 Heat of formation + Delta-G solvation = -72.547884 kcal Electronic energy + Delta-G solvation = -21383.205211 eV Core-core repulsion = 18132.503798 eV Total energy + Delta-G solvation = -3250.701414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94053 -39.28711 -37.04503 -35.72803 -34.74947 -32.81890 -31.49665 -30.36746 -28.22690 -27.83621 -25.98945 -23.51429 -22.62795 -20.61039 -20.25928 -18.99597 -17.90960 -17.29871 -16.81035 -16.57343 -15.85526 -15.73117 -14.90764 -14.83149 -14.35484 -14.24090 -13.90731 -13.81567 -13.30144 -13.09323 -12.77865 -12.69712 -12.51444 -12.42637 -11.93646 -11.82847 -11.74155 -11.41019 -10.99592 -10.54897 -10.30104 -10.11956 -9.89407 -9.49915 -9.37559 -9.32226 -8.86379 -8.61490 -8.40762 -6.10722 -4.10665 2.42070 2.58048 2.62477 3.07321 3.26380 3.34124 3.34662 4.18181 4.26925 4.38329 4.46372 4.62482 4.78266 4.93882 4.99736 5.10581 5.17235 5.22119 5.29013 5.33224 5.44358 5.49109 5.54755 5.70515 6.02369 6.07712 6.25342 6.55810 6.59308 7.02659 7.06420 7.07704 7.17555 7.34808 7.64221 7.72110 7.99226 8.12821 8.44557 8.92880 9.50076 11.02557 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.005313 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.133103 B = 5268.965925 C = 6000.212054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 H 0.081 0.919 4 C 0.102 3.898 5 N -0.623 5.623 6 C 0.536 3.464 7 O -0.527 6.527 8 C 0.069 3.931 9 H 0.099 0.901 10 N -0.829 5.829 11 C -0.132 4.132 12 C -0.010 4.010 13 C -0.525 4.525 14 H 0.071 0.929 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.090 3.910 22 C 0.515 3.485 23 O -0.539 6.539 24 N -0.714 5.714 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.353 0.647 31 H 0.348 0.652 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.017 0.983 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.631 -5.665 6.884 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 H 0.099 0.901 4 C -0.021 4.021 5 N -0.360 5.360 6 C 0.325 3.675 7 O -0.402 6.402 8 C -0.046 4.046 9 H 0.117 0.883 10 N -0.361 5.361 11 C -0.172 4.172 12 C -0.047 4.047 13 C -0.562 4.562 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.035 4.035 22 C 0.300 3.700 23 O -0.416 6.416 24 N -0.367 5.367 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.097 0.903 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -18.796 -6.034 7.288 21.043 hybrid contribution 0.966 0.133 -0.762 1.237 sum -17.830 -5.901 6.527 19.883 Atomic orbital electron populations 1.22121 0.93293 1.03159 1.03467 1.21360 0.95031 0.97107 0.84989 0.90131 1.21988 0.80622 1.01474 0.98051 1.48175 1.06645 1.50435 1.30695 1.20844 0.88063 0.78372 0.80217 1.90645 1.81322 1.36895 1.31338 1.21577 0.89316 1.01782 0.91919 0.88300 1.58749 1.17524 1.29520 1.30355 1.22270 0.99694 0.98896 0.96346 1.19575 0.90871 0.96967 0.97327 1.21031 0.97956 1.18849 1.18401 0.91109 1.25034 0.97882 0.95832 0.94595 1.69909 1.16316 1.39202 1.28390 0.86769 0.79845 0.82204 0.80385 1.20153 1.21322 1.18979 1.22060 1.02251 0.95920 0.83317 1.20253 0.80599 0.78224 0.90894 1.90838 1.67433 1.53796 1.29498 1.45546 1.29657 1.48753 1.12786 0.91598 0.90425 0.91480 0.87026 0.90304 0.83227 0.83793 0.91962 0.91799 0.96467 0.96696 0.92605 0.85128 0.87594 0.76480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.33 37.15 0.35 -0.49 16 2 C 0.12 1.00 3.85 -68.40 -0.26 0.73 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.10 0.94 5.83 -3.63 -0.02 0.92 16 5 N -0.62 -7.54 2.98 -174.14 -0.52 -8.05 16 6 C 0.54 8.10 6.97 -10.98 -0.08 8.02 16 7 O -0.53 -9.22 15.73 5.56 0.09 -9.13 16 8 C 0.07 1.07 2.35 -68.86 -0.16 0.91 16 9 H 0.10 1.40 7.06 -51.93 -0.37 1.03 16 10 N -0.83 -12.83 8.94 -5.66 -0.05 -12.88 16 11 C -0.13 -2.47 4.45 -26.73 -0.12 -2.58 16 12 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 13 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 17 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 21 C 0.09 1.07 5.96 -5.02 -0.03 1.04 16 22 C 0.51 6.83 7.84 -11.74 -0.09 6.74 16 23 O -0.54 -9.36 17.80 5.56 0.10 -9.26 16 24 N -0.71 -7.28 5.12 -54.79 -0.28 -7.56 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.11 1.09 7.06 -51.93 -0.37 0.72 16 29 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.35 5.32 7.55 -39.29 -0.30 5.02 16 31 H 0.35 5.48 8.58 -39.29 -0.34 5.14 16 32 H 0.06 1.17 6.77 -51.93 -0.35 0.82 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.37 5.93 -51.93 -0.31 0.07 16 35 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 37 H 0.13 1.73 4.88 -51.93 -0.25 1.47 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 3.64 8.61 -40.82 -0.35 3.28 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -34.48 315.53 -6.33 -40.81 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.57 Total: 9.80 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -0.95 Total: 1.85 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.08 Total: -55.32 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.19 Total: -18.40 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.48 -6.33 -40.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691574471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.737 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds