Wall clock time and date at job start Mon Mar 30 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.21376 * 2 1 4 4 C 1.52982 * 109.18245 * 119.36228 * 2 1 3 5 5 N 1.47271 * 108.18951 * 167.03480 * 4 2 1 6 6 C 1.34771 * 121.35151 * 118.47233 * 5 4 2 7 7 O 1.21282 * 120.00450 * 0.02562 * 6 5 4 8 8 C 1.50710 * 119.99903 * 180.02562 * 6 5 4 9 9 H 1.08994 * 109.46562 * 319.99886 * 8 6 5 10 10 N 1.46897 * 109.46953 * 200.00275 * 8 6 5 11 11 C 1.52996 * 109.47109 * 80.00344 * 8 6 5 12 12 C 1.53001 * 109.46766 * 185.00352 * 11 8 6 13 13 C 1.50705 * 109.46811 * 179.97438 * 12 11 8 14 14 H 1.07996 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99876 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00092 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00124 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47157 * 89.99690 * 17 15 13 19 19 H 1.48502 * 109.47109 * 210.00198 * 17 15 13 20 20 H 1.48507 * 109.46916 * 329.99988 * 17 15 13 21 21 C 1.47052 * 117.29289 * 298.50181 * 5 4 2 22 22 C 1.50438 * 108.89076 * 42.73463 * 21 5 4 23 23 O 1.21282 * 118.48517 * 167.31598 * 22 21 5 24 24 N 1.33375 * 123.02577 * 347.28707 * 22 21 5 25 25 H 1.09000 * 109.47332 * 179.37136 * 1 2 3 26 26 H 1.08999 * 109.47486 * 299.37365 * 1 2 3 27 27 H 1.09003 * 109.47338 * 59.38029 * 1 2 3 28 28 H 1.08998 * 109.72231 * 286.70955 * 4 2 1 29 29 H 1.09006 * 109.71969 * 47.36461 * 4 2 1 30 30 H 1.00900 * 111.00308 * 176.04388 * 10 8 6 31 31 H 1.00904 * 111.00189 * 299.99497 * 10 8 6 32 32 H 1.09004 * 109.46971 * 304.99806 * 11 8 6 33 33 H 1.08994 * 109.47261 * 64.99819 * 11 8 6 34 34 H 1.08996 * 109.46684 * 299.99274 * 12 11 8 35 35 H 1.08994 * 109.47665 * 59.99714 * 12 11 8 36 36 H 0.96997 * 120.00230 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.56640 * 162.55703 * 21 5 4 38 38 H 1.09004 * 109.56221 * 282.79025 * 21 5 4 39 39 H 0.96996 * 117.70878 * 184.60613 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0326 -0.7085 1.2593 5 7 3.4714 -0.9753 1.0933 6 6 4.3845 -0.4413 1.9285 7 8 4.0273 0.2750 2.8397 8 6 5.8495 -0.7342 1.7301 9 1 5.9764 -1.7808 1.4534 10 7 6.5758 -0.4662 2.9785 11 6 6.4019 0.1583 0.6170 12 6 7.8550 -0.2249 0.3300 13 6 8.3990 0.6539 -0.7669 14 1 7.7709 1.4097 -1.2147 15 6 9.6985 0.4929 -1.1986 16 7 10.1733 1.2601 -2.1555 17 14 10.7846 -0.8150 -0.4245 18 1 10.6398 -2.0873 -1.1763 19 1 12.2013 -0.3719 -0.4693 20 1 10.3762 -1.0252 0.9878 21 6 3.8713 -1.8475 -0.0210 22 6 3.0777 -1.4718 -1.2426 23 8 3.4252 -1.9147 -2.3169 24 7 2.0093 -0.6747 -1.1986 25 1 -0.3634 -1.0276 -0.0113 26 1 -0.3634 0.5041 0.8955 27 1 -0.3634 0.5234 -0.8844 28 1 1.8748 -0.0699 2.1284 29 1 1.4970 -1.6487 1.3909 30 1 7.5495 -0.7160 2.8912 31 1 6.4735 0.4984 3.2564 32 1 5.8057 0.0243 -0.2857 33 1 6.3562 1.2011 0.9310 34 1 8.4511 -0.0908 1.2326 35 1 7.9007 -1.2676 0.0159 36 1 11.0874 1.1466 -2.4595 37 1 4.9347 -1.7180 -0.2224 38 1 3.6731 -2.8871 0.2399 39 1 1.5146 -0.5377 -2.0216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691574471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:30 Heat of formation + Delta-G solvation = -101.385377 kcal Electronic energy + Delta-G solvation = -21384.455699 eV Core-core repulsion = 18132.503798 eV Total energy + Delta-G solvation = -3251.951901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96458 -40.43721 -38.05993 -37.15692 -35.73066 -34.82271 -32.33145 -32.11162 -29.17012 -28.97150 -27.33881 -24.96981 -23.47774 -22.19846 -21.41472 -19.98828 -19.25110 -18.67824 -18.22840 -17.64406 -16.83899 -16.76063 -16.27703 -16.07208 -15.91181 -15.65058 -15.08205 -14.97420 -14.68949 -14.38914 -14.13299 -13.61966 -13.52422 -13.46983 -13.12152 -12.94601 -12.73461 -12.56722 -12.44848 -12.16566 -11.87892 -11.71473 -11.53583 -11.43783 -10.79233 -10.77970 -10.28995 -9.86307 -9.68819 -8.30869 -6.37025 1.37065 1.38229 1.39962 1.45338 1.51058 1.61529 2.18077 2.35801 3.04889 3.27208 3.31556 3.61752 3.69401 3.95458 3.99851 4.04607 4.09158 4.15573 4.31906 4.49590 4.53030 4.65938 4.70233 4.84340 4.88804 5.00880 5.11617 5.28900 5.31603 5.41991 5.60666 5.70987 5.92101 6.14011 6.15442 6.22889 6.46740 6.71194 6.96856 7.03404 7.27914 8.86227 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.005313 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.133103 B = 5268.965925 C = 6000.212054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.121 3.879 3 H 0.069 0.931 4 C 0.097 3.903 5 N -0.616 5.616 6 C 0.535 3.465 7 O -0.554 6.554 8 C 0.076 3.924 9 H 0.120 0.880 10 N -0.826 5.826 11 C -0.120 4.120 12 C -0.006 4.006 13 C -0.537 4.537 14 H 0.022 0.978 15 C 0.002 3.998 16 N -0.954 5.954 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.288 1.288 20 H -0.233 1.233 21 C 0.091 3.909 22 C 0.511 3.489 23 O -0.589 6.589 24 N -0.704 5.704 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.356 0.644 31 H 0.346 0.654 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.770 -7.727 8.752 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.024 4.024 5 N -0.351 5.351 6 C 0.324 3.676 7 O -0.431 6.431 8 C -0.039 4.039 9 H 0.138 0.862 10 N -0.358 5.358 11 C -0.159 4.159 12 C -0.043 4.043 13 C -0.574 4.574 14 H 0.041 0.959 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.214 1.214 20 H -0.156 1.156 21 C -0.034 4.034 22 C 0.297 3.703 23 O -0.469 6.469 24 N -0.355 5.355 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.171 0.829 31 H 0.160 0.840 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.135 0.865 38 H 0.158 0.842 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -20.005 -8.086 9.178 23.449 hybrid contribution 1.213 0.889 -1.409 2.061 sum -18.792 -7.197 7.769 21.571 Atomic orbital electron populations 1.22078 0.90329 1.04160 1.04563 1.21488 0.97249 0.95956 0.83725 0.91309 1.22267 0.78905 1.03002 0.98261 1.48155 1.07616 1.49608 1.29737 1.20670 0.88179 0.78296 0.80438 1.90637 1.81679 1.38116 1.32708 1.21502 0.89869 1.01973 0.90538 0.86206 1.58776 1.17773 1.29389 1.29862 1.22055 0.97798 0.98675 0.97413 1.19503 0.92837 0.96323 0.95664 1.21418 0.97762 1.18574 1.19693 0.95948 1.26108 0.99710 0.98552 0.95089 1.70087 1.16981 1.41765 1.30592 0.85601 0.77063 0.78654 0.80994 1.19149 1.21431 1.15616 1.22112 1.01227 0.97508 0.82577 1.20512 0.81005 0.78145 0.90605 1.90818 1.68947 1.56027 1.31122 1.45587 1.28660 1.47403 1.13894 0.90609 0.88978 0.90779 0.87246 0.87476 0.82862 0.84032 0.92812 0.93594 0.95082 0.95220 0.92508 0.86504 0.84244 0.75833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.33 71.98 0.67 -0.47 16 2 C 0.12 1.76 3.85 45.14 0.17 1.93 16 3 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 4 C 0.10 1.55 5.83 86.23 0.50 2.05 16 5 N -0.62 -13.67 2.98 -823.25 -2.45 -16.13 16 6 C 0.54 15.33 6.97 87.66 0.61 15.94 16 7 O -0.55 -18.67 15.73 -3.04 -0.05 -18.72 16 8 C 0.08 2.23 2.35 44.17 0.10 2.34 16 9 H 0.12 3.03 7.06 -2.39 -0.02 3.01 16 10 N -0.83 -23.86 8.94 -171.80 -1.54 -25.39 16 11 C -0.12 -4.42 4.45 30.59 0.14 -4.28 16 12 C -0.01 -0.25 3.81 29.85 0.11 -0.14 16 13 C -0.54 -30.65 9.66 25.60 0.25 -30.40 16 14 H 0.02 1.44 7.99 -2.91 -0.02 1.41 16 15 C 0.00 0.12 5.47 84.65 0.46 0.58 16 16 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 17 Si 0.95 42.92 27.47 68.60 1.88 44.80 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.23 -9.23 6.54 99.48 0.65 -8.58 16 21 C 0.09 1.98 5.96 85.45 0.51 2.49 16 22 C 0.51 13.10 7.84 87.79 0.69 13.79 16 23 O -0.59 -20.52 17.80 -3.04 -0.05 -20.57 16 24 N -0.70 -13.43 5.12 -446.41 -2.29 -15.72 16 25 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.11 1.88 7.06 -2.39 -0.02 1.87 16 29 H 0.11 1.16 8.09 -2.38 -0.02 1.14 16 30 H 0.36 9.76 7.55 -89.69 -0.68 9.08 16 31 H 0.35 10.43 8.58 -89.69 -0.77 9.66 16 32 H 0.05 2.06 6.77 -2.38 -0.02 2.04 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.03 1.27 5.93 -2.39 -0.01 1.26 16 35 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 36 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.12 2.94 4.88 -2.39 -0.01 2.93 16 38 H 0.14 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.40 6.93 8.61 -92.71 -0.80 6.13 16 Total: -1.00 -77.27 315.53 -1.18 -78.44 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -1.20 Total: 29.48 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 4.22 Total: 3.84 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -5.98 Total: -117.27 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.10 Total: -39.29 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -77.27 -1.18 -78.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691574471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.941 kcal (2) G-P(sol) polarization free energy of solvation -77.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds