Wall clock time and date at job start Mon Mar 30 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00022 * 2 1 4 4 H 1.48498 * 109.46944 * 270.00381 * 3 2 1 5 5 H 1.48498 * 109.47074 * 30.00172 * 3 2 1 6 6 H 1.48498 * 109.46835 * 150.00058 * 3 2 1 7 7 C 1.37871 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00252 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47434 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47011 * 54.99857 * 11 10 9 13 13 N 1.46901 * 109.47262 * 295.00483 * 11 10 9 14 14 C 1.50694 * 109.47339 * 175.00016 * 11 10 9 15 15 O 1.21280 * 120.00154 * 99.99821 * 14 11 10 16 16 N 1.34785 * 120.00025 * 280.00239 * 14 11 10 17 17 C 1.46496 * 119.99805 * 180.02562 * 16 14 11 18 18 H 1.08994 * 109.33436 * 35.21148 * 17 16 14 19 19 C 1.53073 * 109.40036 * 154.99944 * 17 16 14 20 20 C 1.53343 * 108.42509 * 169.02589 * 19 17 16 21 21 C 1.52918 * 108.81090 * 292.38784 * 20 19 17 22 22 N 1.46118 * 110.29094 * 50.69674 * 21 20 19 23 23 C 1.33358 * 124.17507 * 341.03192 * 22 21 20 24 24 O 1.21272 * 118.24742 * 182.15440 * 23 22 21 25 25 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47258 * 59.99757 * 9 7 2 27 27 H 1.09005 * 109.47050 * 300.00019 * 9 7 2 28 28 H 1.09007 * 109.46867 * 59.99611 * 10 9 7 29 29 H 1.09001 * 109.46872 * 300.00380 * 10 9 7 30 30 H 1.00901 * 111.00057 * 176.04765 * 13 11 10 31 31 H 1.00904 * 110.99512 * 299.99667 * 13 11 10 32 32 H 0.96993 * 119.99704 * 359.97438 * 16 14 11 33 33 H 1.09001 * 109.67279 * 49.29010 * 19 17 16 34 34 H 1.08999 * 109.67053 * 288.76185 * 19 17 16 35 35 H 1.09002 * 109.60408 * 52.22738 * 20 19 17 36 36 H 1.08997 * 109.60323 * 172.54968 * 20 19 17 37 37 H 1.08998 * 109.30513 * 171.14620 * 21 20 19 38 38 H 1.08999 * 109.30107 * 290.52391 * 21 20 19 39 39 H 0.96997 * 117.87888 * 160.98806 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7877 -5.0072 -0.8415 13 7 0.7288 -5.1181 1.2556 14 6 2.4547 -6.1298 -0.1237 15 8 2.7869 -6.7531 0.8622 16 7 2.9573 -6.4593 -1.3302 17 6 3.9042 -7.5705 -1.4506 18 1 3.6380 -8.3503 -0.7371 19 6 3.8436 -8.1386 -2.8708 20 6 5.0208 -9.1034 -3.0575 21 6 6.3230 -8.3020 -3.0377 22 7 6.3647 -7.4318 -1.8647 23 6 5.2919 -7.0775 -1.1562 24 8 5.4450 -6.3170 -0.2241 25 1 -0.4850 0.8400 0.0004 26 1 0.6239 -2.5566 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8718 -3.6043 -0.8905 30 1 0.1645 -5.9545 1.2536 31 1 1.3489 -5.1022 2.0514 32 1 2.6913 -5.9610 -2.1187 33 1 3.9164 -7.3265 -3.5942 34 1 2.9046 -8.6736 -3.0122 35 1 5.0279 -9.8327 -2.2474 36 1 4.9231 -9.6189 -4.0128 37 1 7.1686 -8.9892 -3.0113 38 1 6.3853 -7.6935 -3.9399 39 1 7.2281 -7.0907 -1.5834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691601002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:53 Heat of formation + Delta-G solvation = -87.492736 kcal Electronic energy + Delta-G solvation = -20908.921035 eV Core-core repulsion = 17657.571564 eV Total energy + Delta-G solvation = -3251.349471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81141 -39.16904 -36.69075 -35.30423 -34.77381 -32.73278 -32.04560 -30.03080 -29.22545 -26.34036 -24.68549 -23.46456 -22.79024 -20.60422 -19.90679 -19.45370 -17.58206 -17.02180 -16.61525 -16.53843 -16.03327 -15.39856 -15.07119 -14.45183 -14.39432 -14.28039 -14.05404 -13.86073 -13.59225 -13.30965 -12.35483 -12.24607 -12.00190 -11.87515 -11.70579 -11.48038 -11.39163 -10.84352 -10.59112 -10.48742 -10.23028 -10.03243 -9.70902 -9.29137 -9.28059 -8.99672 -8.92860 -8.29112 -8.14202 -5.88263 -3.89704 2.43344 2.79450 3.13741 3.34111 3.38701 3.44878 3.49809 4.22401 4.25215 4.37835 4.41707 4.55607 4.87644 4.90329 5.01881 5.09399 5.19259 5.31675 5.40226 5.47212 5.47474 5.60594 5.68989 5.93484 6.33251 6.54877 6.60287 6.79556 7.11324 7.18217 7.42056 7.62823 7.82809 7.87275 8.03326 8.12115 8.19622 8.41167 8.55918 9.18369 9.73101 11.22743 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023632 B = 0.004155 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.554355 B = 6737.877065 C = 7341.566045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.093 4.093 11 C 0.081 3.919 12 H 0.097 0.903 13 N -0.807 5.807 14 C 0.490 3.510 15 O -0.538 6.538 16 N -0.719 5.719 17 C 0.136 3.864 18 H 0.115 0.885 19 C -0.131 4.131 20 C -0.134 4.134 21 C 0.109 3.891 22 N -0.726 5.726 23 C 0.499 3.501 24 O -0.521 6.521 25 H 0.259 0.741 26 H 0.012 0.988 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.333 0.667 31 H 0.349 0.651 32 H 0.405 0.595 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 -21.168 -10.390 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.132 4.132 11 C -0.035 4.035 12 H 0.115 0.885 13 N -0.334 5.334 14 C 0.276 3.724 15 O -0.413 6.413 16 N -0.373 5.373 17 C 0.026 3.974 18 H 0.132 0.868 19 C -0.169 4.169 20 C -0.172 4.172 21 C -0.015 4.015 22 N -0.381 5.381 23 C 0.283 3.717 24 O -0.395 6.395 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.163 0.837 32 H 0.240 0.760 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.515 -20.466 -9.397 24.076 hybrid contribution 1.447 0.316 -0.339 1.519 sum 9.962 -20.150 -9.736 24.495 Atomic orbital electron populations 1.69977 1.05925 1.26322 1.51118 1.24982 0.94796 0.98997 0.95554 0.86655 0.79956 0.83802 0.77943 1.20823 1.21268 1.19962 1.21305 0.92960 0.91347 1.50232 0.92990 1.19026 0.93551 0.89880 0.98122 1.21631 0.98685 0.91963 1.00890 1.21817 0.93369 0.93260 0.95009 0.88488 1.59018 1.26945 1.44112 1.03349 1.22764 0.81803 0.85489 0.82313 1.90645 1.60447 1.53587 1.36656 1.45972 1.45444 1.34810 1.11047 1.20702 0.86702 0.90978 0.98975 0.86776 1.21962 1.00005 0.99897 0.95019 1.21841 0.93365 0.98071 1.03933 1.21447 0.98752 0.93118 0.88195 1.45644 1.10226 1.51483 1.30755 1.20735 0.87314 0.81302 0.82359 1.90844 1.85511 1.34250 1.28901 0.93168 0.96929 0.94666 0.92735 0.92976 0.85568 0.83725 0.75971 0.90234 0.89624 0.90598 0.89121 0.90445 0.91511 0.76658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.59 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16 10 C -0.09 -2.04 4.78 -26.73 -0.13 -2.17 16 11 C 0.08 1.45 3.15 -68.87 -0.22 1.23 16 12 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 13 N -0.81 -14.37 8.44 -5.66 -0.05 -14.41 16 14 C 0.49 8.35 6.49 -10.98 -0.07 8.28 16 15 O -0.54 -10.79 15.45 3.67 0.06 -10.73 16 16 N -0.72 -9.49 4.97 -55.15 -0.27 -9.77 16 17 C 0.14 1.54 2.70 -69.30 -0.19 1.36 16 18 H 0.11 1.42 7.58 -51.93 -0.39 1.02 16 19 C -0.13 -0.84 5.51 -26.52 -0.15 -0.99 16 20 C -0.13 -0.61 6.01 -26.60 -0.16 -0.77 16 21 C 0.11 0.56 7.20 -4.29 -0.03 0.53 16 22 N -0.73 -6.79 5.46 -61.14 -0.33 -7.12 16 23 C 0.50 6.84 7.44 -11.87 -0.09 6.75 16 24 O -0.52 -10.19 16.53 3.68 0.06 -10.13 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 1.01 7.75 -51.93 -0.40 0.60 16 28 H 0.05 1.29 8.14 -51.92 -0.42 0.86 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.33 5.05 9.06 -39.29 -0.36 4.70 16 31 H 0.35 6.45 8.58 -39.29 -0.34 6.12 16 32 H 0.41 4.42 8.58 -40.82 -0.35 4.07 16 33 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.37 8.12 -51.93 -0.42 -0.06 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.40 3.55 8.80 -40.82 -0.36 3.19 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -37.92 325.46 -7.46 -45.38 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.96 Total: 10.37 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.57 Total: 0.93 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.08 Total: -58.07 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.12 Total: -20.86 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.92 -7.46 -45.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.114 kcal (2) G-P(sol) polarization free energy of solvation -37.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds