Wall clock time and date at job start Mon Mar 30 2020 05:20:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86806 * 120.00022 * 2 1
4 4 H 1.48498 * 109.46944 * 270.00381 * 3 2 1
5 5 H 1.48498 * 109.47074 * 30.00172 * 3 2 1
6 6 H 1.48498 * 109.46835 * 150.00058 * 3 2 1
7 7 C 1.37871 * 120.00094 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00252 * 179.97438 * 7 2 1
9 9 C 1.50704 * 119.99747 * 359.97438 * 7 2 1
10 10 C 1.53003 * 109.47201 * 180.02562 * 9 7 2
11 11 C 1.52995 * 109.47434 * 179.97438 * 10 9 7
12 12 H 1.09006 * 109.47011 * 54.99857 * 11 10 9
13 13 N 1.46901 * 109.47262 * 295.00483 * 11 10 9
14 14 C 1.50694 * 109.47339 * 175.00016 * 11 10 9
15 15 O 1.21280 * 120.00154 * 99.99821 * 14 11 10
16 16 N 1.34785 * 120.00025 * 280.00239 * 14 11 10
17 17 C 1.46496 * 119.99805 * 180.02562 * 16 14 11
18 18 H 1.08994 * 109.33436 * 35.21148 * 17 16 14
19 19 C 1.53073 * 109.40036 * 154.99944 * 17 16 14
20 20 C 1.53343 * 108.42509 * 169.02589 * 19 17 16
21 21 C 1.52918 * 108.81090 * 292.38784 * 20 19 17
22 22 N 1.46118 * 110.29094 * 50.69674 * 21 20 19
23 23 C 1.33358 * 124.17507 * 341.03192 * 22 21 20
24 24 O 1.21272 * 118.24742 * 182.15440 * 23 22 21
25 25 H 0.97000 * 120.00092 * 359.97438 * 1 2 3
26 26 H 1.09001 * 109.47258 * 59.99757 * 9 7 2
27 27 H 1.09005 * 109.47050 * 300.00019 * 9 7 2
28 28 H 1.09007 * 109.46867 * 59.99611 * 10 9 7
29 29 H 1.09001 * 109.46872 * 300.00380 * 10 9 7
30 30 H 1.00901 * 111.00057 * 176.04765 * 13 11 10
31 31 H 1.00904 * 110.99512 * 299.99667 * 13 11 10
32 32 H 0.96993 * 119.99704 * 359.97438 * 16 14 11
33 33 H 1.09001 * 109.67279 * 49.29010 * 19 17 16
34 34 H 1.08999 * 109.67053 * 288.76185 * 19 17 16
35 35 H 1.09002 * 109.60408 * 52.22738 * 20 19 17
36 36 H 1.08997 * 109.60323 * 172.54968 * 20 19 17
37 37 H 1.08998 * 109.30513 * 171.14620 * 21 20 19
38 38 H 1.08999 * 109.30107 * 290.52391 * 21 20 19
39 39 H 0.96997 * 117.87888 * 160.98806 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 6 1.4802 -4.9871 0.0001
12 1 0.7877 -5.0072 -0.8415
13 7 0.7288 -5.1181 1.2556
14 6 2.4547 -6.1298 -0.1237
15 8 2.7869 -6.7531 0.8622
16 7 2.9573 -6.4593 -1.3302
17 6 3.9042 -7.5705 -1.4506
18 1 3.6380 -8.3503 -0.7371
19 6 3.8436 -8.1386 -2.8708
20 6 5.0208 -9.1034 -3.0575
21 6 6.3230 -8.3020 -3.0377
22 7 6.3647 -7.4318 -1.8647
23 6 5.2919 -7.0775 -1.1562
24 8 5.4450 -6.3170 -0.2241
25 1 -0.4850 0.8400 0.0004
26 1 0.6239 -2.5566 -0.8903
27 1 0.6246 -2.5570 0.8897
28 1 2.8719 -3.6043 0.8895
29 1 2.8718 -3.6043 -0.8905
30 1 0.1645 -5.9545 1.2536
31 1 1.3489 -5.1022 2.0514
32 1 2.6913 -5.9610 -2.1187
33 1 3.9164 -7.3265 -3.5942
34 1 2.9046 -8.6736 -3.0122
35 1 5.0279 -9.8327 -2.2474
36 1 4.9231 -9.6189 -4.0128
37 1 7.1686 -8.9892 -3.0113
38 1 6.3853 -7.6935 -3.9399
39 1 7.2281 -7.0907 -1.5834
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000691601002.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:20:53
Heat of formation + Delta-G solvation = -87.492736 kcal
Electronic energy + Delta-G solvation = -20908.921035 eV
Core-core repulsion = 17657.571564 eV
Total energy + Delta-G solvation = -3251.349471 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.81141 -39.16904 -36.69075 -35.30423 -34.77381 -32.73278 -32.04560 -30.03080
-29.22545 -26.34036 -24.68549 -23.46456 -22.79024 -20.60422 -19.90679 -19.45370
-17.58206 -17.02180 -16.61525 -16.53843 -16.03327 -15.39856 -15.07119 -14.45183
-14.39432 -14.28039 -14.05404 -13.86073 -13.59225 -13.30965 -12.35483 -12.24607
-12.00190 -11.87515 -11.70579 -11.48038 -11.39163 -10.84352 -10.59112 -10.48742
-10.23028 -10.03243 -9.70902 -9.29137 -9.28059 -8.99672 -8.92860 -8.29112
-8.14202 -5.88263 -3.89704 2.43344 2.79450 3.13741 3.34111 3.38701
3.44878 3.49809 4.22401 4.25215 4.37835 4.41707 4.55607 4.87644
4.90329 5.01881 5.09399 5.19259 5.31675 5.40226 5.47212 5.47474
5.60594 5.68989 5.93484 6.33251 6.54877 6.60287 6.79556 7.11324
7.18217 7.42056 7.62823 7.82809 7.87275 8.03326 8.12115 8.19622
8.41167 8.55918 9.18369 9.73101 11.22743
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.023632 B = 0.004155 C = 0.003813
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.554355 B = 6737.877065 C = 7341.566045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.057 3.943
3 Si 0.888 3.112
4 H -0.282 1.282
5 H -0.287 1.287
6 H -0.275 1.275
7 C -0.520 4.520
8 H 0.052 0.948
9 C 0.031 3.969
10 C -0.093 4.093
11 C 0.081 3.919
12 H 0.097 0.903
13 N -0.807 5.807
14 C 0.490 3.510
15 O -0.538 6.538
16 N -0.719 5.719
17 C 0.136 3.864
18 H 0.115 0.885
19 C -0.131 4.131
20 C -0.134 4.134
21 C 0.109 3.891
22 N -0.726 5.726
23 C 0.499 3.501
24 O -0.521 6.521
25 H 0.259 0.741
26 H 0.012 0.988
27 H 0.035 0.965
28 H 0.054 0.946
29 H 0.052 0.948
30 H 0.333 0.667
31 H 0.349 0.651
32 H 0.405 0.595
33 H 0.079 0.921
34 H 0.085 0.915
35 H 0.075 0.925
36 H 0.090 0.910
37 H 0.077 0.923
38 H 0.067 0.933
39 H 0.398 0.602
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.967 -21.168 -10.390 25.227
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.143 4.143
3 Si 0.716 3.284
4 H -0.208 1.208
5 H -0.213 1.213
6 H -0.200 1.200
7 C -0.558 4.558
8 H 0.070 0.930
9 C -0.006 4.006
10 C -0.132 4.132
11 C -0.035 4.035
12 H 0.115 0.885
13 N -0.334 5.334
14 C 0.276 3.724
15 O -0.413 6.413
16 N -0.373 5.373
17 C 0.026 3.974
18 H 0.132 0.868
19 C -0.169 4.169
20 C -0.172 4.172
21 C -0.015 4.015
22 N -0.381 5.381
23 C 0.283 3.717
24 O -0.395 6.395
25 H 0.068 0.932
26 H 0.031 0.969
27 H 0.053 0.947
28 H 0.073 0.927
29 H 0.070 0.930
30 H 0.144 0.856
31 H 0.163 0.837
32 H 0.240 0.760
33 H 0.098 0.902
34 H 0.104 0.896
35 H 0.094 0.906
36 H 0.109 0.891
37 H 0.096 0.904
38 H 0.085 0.915
39 H 0.233 0.767
Dipole moment (debyes) X Y Z Total
from point charges 8.515 -20.466 -9.397 24.076
hybrid contribution 1.447 0.316 -0.339 1.519
sum 9.962 -20.150 -9.736 24.495
Atomic orbital electron populations
1.69977 1.05925 1.26322 1.51118 1.24982 0.94796 0.98997 0.95554
0.86655 0.79956 0.83802 0.77943 1.20823 1.21268 1.19962 1.21305
0.92960 0.91347 1.50232 0.92990 1.19026 0.93551 0.89880 0.98122
1.21631 0.98685 0.91963 1.00890 1.21817 0.93369 0.93260 0.95009
0.88488 1.59018 1.26945 1.44112 1.03349 1.22764 0.81803 0.85489
0.82313 1.90645 1.60447 1.53587 1.36656 1.45972 1.45444 1.34810
1.11047 1.20702 0.86702 0.90978 0.98975 0.86776 1.21962 1.00005
0.99897 0.95019 1.21841 0.93365 0.98071 1.03933 1.21447 0.98752
0.93118 0.88195 1.45644 1.10226 1.51483 1.30755 1.20735 0.87314
0.81302 0.82359 1.90844 1.85511 1.34250 1.28901 0.93168 0.96929
0.94666 0.92735 0.92976 0.85568 0.83725 0.75971 0.90234 0.89624
0.90598 0.89121 0.90445 0.91511 0.76658
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16
2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
3 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16
4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
6 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16
7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.59 16
8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16
9 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16
10 C -0.09 -2.04 4.78 -26.73 -0.13 -2.17 16
11 C 0.08 1.45 3.15 -68.87 -0.22 1.23 16
12 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16
13 N -0.81 -14.37 8.44 -5.66 -0.05 -14.41 16
14 C 0.49 8.35 6.49 -10.98 -0.07 8.28 16
15 O -0.54 -10.79 15.45 3.67 0.06 -10.73 16
16 N -0.72 -9.49 4.97 -55.15 -0.27 -9.77 16
17 C 0.14 1.54 2.70 -69.30 -0.19 1.36 16
18 H 0.11 1.42 7.58 -51.93 -0.39 1.02 16
19 C -0.13 -0.84 5.51 -26.52 -0.15 -0.99 16
20 C -0.13 -0.61 6.01 -26.60 -0.16 -0.77 16
21 C 0.11 0.56 7.20 -4.29 -0.03 0.53 16
22 N -0.73 -6.79 5.46 -61.14 -0.33 -7.12 16
23 C 0.50 6.84 7.44 -11.87 -0.09 6.75 16
24 O -0.52 -10.19 16.53 3.68 0.06 -10.13 16
25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
27 H 0.03 1.01 7.75 -51.93 -0.40 0.60 16
28 H 0.05 1.29 8.14 -51.92 -0.42 0.86 16
29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16
30 H 0.33 5.05 9.06 -39.29 -0.36 4.70 16
31 H 0.35 6.45 8.58 -39.29 -0.34 6.12 16
32 H 0.41 4.42 8.58 -40.82 -0.35 4.07 16
33 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16
34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
35 H 0.08 0.37 8.12 -51.93 -0.42 -0.06 16
36 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16
37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16
38 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16
39 H 0.40 3.55 8.80 -40.82 -0.36 3.19 16
LS Contribution 325.46 15.07 4.90 4.90
Total: -1.00 -37.92 325.46 -7.46 -45.38
By element:
Atomic # 1 Polarization: 16.34 SS G_CDS: -5.96 Total: 10.37 kcal
Atomic # 6 Polarization: 2.51 SS G_CDS: -1.57 Total: 0.93 kcal
Atomic # 7 Polarization: -58.15 SS G_CDS: 0.08 Total: -58.07 kcal
Atomic # 8 Polarization: -20.98 SS G_CDS: 0.12 Total: -20.86 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -37.92 -7.46 -45.38 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691601002.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.114 kcal
(2) G-P(sol) polarization free energy of solvation -37.922 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.493 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds