Wall clock time and date at job start Mon Mar 30 2020 05:20:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86806 * 120.00022 * 2 1
4 4 H 1.48498 * 109.46944 * 270.00381 * 3 2 1
5 5 H 1.48498 * 109.47074 * 30.00172 * 3 2 1
6 6 H 1.48498 * 109.46835 * 150.00058 * 3 2 1
7 7 C 1.37871 * 120.00094 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00252 * 179.97438 * 7 2 1
9 9 C 1.50704 * 119.99747 * 359.97438 * 7 2 1
10 10 C 1.53003 * 109.47201 * 180.02562 * 9 7 2
11 11 C 1.52995 * 109.47434 * 179.97438 * 10 9 7
12 12 H 1.09006 * 109.47011 * 54.99857 * 11 10 9
13 13 N 1.46901 * 109.47262 * 295.00483 * 11 10 9
14 14 C 1.50694 * 109.47339 * 175.00016 * 11 10 9
15 15 O 1.21280 * 120.00154 * 99.99821 * 14 11 10
16 16 N 1.34785 * 120.00025 * 280.00239 * 14 11 10
17 17 C 1.46496 * 119.99805 * 180.02562 * 16 14 11
18 18 H 1.08994 * 109.33436 * 35.21148 * 17 16 14
19 19 C 1.53073 * 109.40036 * 154.99944 * 17 16 14
20 20 C 1.53343 * 108.42509 * 169.02589 * 19 17 16
21 21 C 1.52918 * 108.81090 * 292.38784 * 20 19 17
22 22 N 1.46118 * 110.29094 * 50.69674 * 21 20 19
23 23 C 1.33358 * 124.17507 * 341.03192 * 22 21 20
24 24 O 1.21272 * 118.24742 * 182.15440 * 23 22 21
25 25 H 0.97000 * 120.00092 * 359.97438 * 1 2 3
26 26 H 1.09001 * 109.47258 * 59.99757 * 9 7 2
27 27 H 1.09005 * 109.47050 * 300.00019 * 9 7 2
28 28 H 1.09007 * 109.46867 * 59.99611 * 10 9 7
29 29 H 1.09001 * 109.46872 * 300.00380 * 10 9 7
30 30 H 1.00901 * 111.00057 * 176.04765 * 13 11 10
31 31 H 1.00904 * 110.99512 * 299.99667 * 13 11 10
32 32 H 0.96993 * 119.99704 * 359.97438 * 16 14 11
33 33 H 1.09001 * 109.67279 * 49.29010 * 19 17 16
34 34 H 1.08999 * 109.67053 * 288.76185 * 19 17 16
35 35 H 1.09002 * 109.60408 * 52.22738 * 20 19 17
36 36 H 1.08997 * 109.60323 * 172.54968 * 20 19 17
37 37 H 1.08998 * 109.30513 * 171.14620 * 21 20 19
38 38 H 1.08999 * 109.30107 * 290.52391 * 21 20 19
39 39 H 0.96997 * 117.87888 * 160.98806 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 6 1.4802 -4.9871 0.0001
12 1 0.7877 -5.0072 -0.8415
13 7 0.7288 -5.1181 1.2556
14 6 2.4547 -6.1298 -0.1237
15 8 2.7869 -6.7531 0.8622
16 7 2.9573 -6.4593 -1.3302
17 6 3.9042 -7.5705 -1.4506
18 1 3.6380 -8.3503 -0.7371
19 6 3.8436 -8.1386 -2.8708
20 6 5.0208 -9.1034 -3.0575
21 6 6.3230 -8.3020 -3.0377
22 7 6.3647 -7.4318 -1.8647
23 6 5.2919 -7.0775 -1.1562
24 8 5.4450 -6.3170 -0.2241
25 1 -0.4850 0.8400 0.0004
26 1 0.6239 -2.5566 -0.8903
27 1 0.6246 -2.5570 0.8897
28 1 2.8719 -3.6043 0.8895
29 1 2.8718 -3.6043 -0.8905
30 1 0.1645 -5.9545 1.2536
31 1 1.3489 -5.1022 2.0514
32 1 2.6913 -5.9610 -2.1187
33 1 3.9164 -7.3265 -3.5942
34 1 2.9046 -8.6736 -3.0122
35 1 5.0279 -9.8327 -2.2474
36 1 4.9231 -9.6189 -4.0128
37 1 7.1686 -8.9892 -3.0113
38 1 6.3853 -7.6935 -3.9399
39 1 7.2281 -7.0907 -1.5834
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000691601002.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:20:52
Heat of formation + Delta-G solvation = -120.227722 kcal
Electronic energy + Delta-G solvation = -20910.340531 eV
Core-core repulsion = 17657.571564 eV
Total energy + Delta-G solvation = -3252.768967 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.83653 -40.42266 -37.57553 -36.85999 -35.95597 -34.82347 -32.85039 -31.94312
-30.11133 -28.04389 -25.88376 -24.76357 -23.67677 -22.32718 -21.23515 -20.35529
-18.65238 -18.40342 -18.06447 -17.62530 -17.39512 -16.88657 -16.49253 -16.00495
-15.51331 -15.28568 -15.08120 -14.93634 -14.70978 -14.37650 -14.29398 -13.83029
-13.43592 -13.05820 -12.80847 -12.58536 -12.50478 -12.28537 -12.27040 -11.94116
-11.78029 -11.66117 -11.30066 -11.25205 -11.00266 -10.49935 -10.12307 -10.07266
-9.64476 -8.15061 -6.25331 1.33627 1.39721 1.41650 1.52632 1.57001
2.17673 2.36813 2.44182 3.17335 3.53051 3.55228 3.61461 3.79922
3.87554 4.00206 4.08751 4.28707 4.31101 4.52007 4.72997 4.74572
4.78292 4.93027 5.03276 5.04778 5.19712 5.22671 5.34131 5.55056
5.81357 5.83016 5.96624 6.06200 6.26362 6.30177 6.39513 6.52911
6.91954 7.11412 7.20958 7.42407 8.96137
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.023632 B = 0.004155 C = 0.003813
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.554355 B = 6737.877065 C = 7341.566045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C 0.005 3.995
3 Si 0.959 3.041
4 H -0.268 1.268
5 H -0.280 1.280
6 H -0.272 1.272
7 C -0.547 4.547
8 H 0.048 0.952
9 C 0.042 3.958
10 C -0.078 4.078
11 C 0.088 3.912
12 H 0.119 0.881
13 N -0.817 5.817
14 C 0.493 3.507
15 O -0.571 6.571
16 N -0.705 5.705
17 C 0.133 3.867
18 H 0.102 0.898
19 C -0.122 4.122
20 C -0.130 4.130
21 C 0.099 3.901
22 N -0.713 5.713
23 C 0.491 3.509
24 O -0.595 6.595
25 H 0.263 0.737
26 H 0.000 1.000
27 H 0.007 0.993
28 H 0.030 0.970
29 H 0.059 0.941
30 H 0.348 0.652
31 H 0.343 0.657
32 H 0.417 0.583
33 H 0.090 0.910
34 H 0.103 0.897
35 H 0.072 0.928
36 H 0.125 0.875
37 H 0.104 0.896
38 H 0.085 0.915
39 H 0.399 0.601
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.890 -22.209 -12.895 27.519
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.193 4.193
3 Si 0.784 3.216
4 H -0.193 1.193
5 H -0.205 1.205
6 H -0.196 1.196
7 C -0.585 4.585
8 H 0.067 0.933
9 C 0.004 3.996
10 C -0.117 4.117
11 C -0.027 4.027
12 H 0.137 0.863
13 N -0.345 5.345
14 C 0.278 3.722
15 O -0.450 6.450
16 N -0.359 5.359
17 C 0.024 3.976
18 H 0.120 0.880
19 C -0.160 4.160
20 C -0.168 4.168
21 C -0.023 4.023
22 N -0.365 5.365
23 C 0.276 3.724
24 O -0.474 6.474
25 H 0.072 0.928
26 H 0.018 0.982
27 H 0.026 0.974
28 H 0.049 0.951
29 H 0.078 0.922
30 H 0.162 0.838
31 H 0.156 0.844
32 H 0.255 0.745
33 H 0.108 0.892
34 H 0.122 0.878
35 H 0.091 0.909
36 H 0.143 0.857
37 H 0.122 0.878
38 H 0.103 0.897
39 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges 9.461 -21.562 -12.005 26.430
hybrid contribution 1.203 0.573 0.377 1.385
sum 10.664 -20.989 -11.628 26.258
Atomic orbital electron populations
1.70093 1.07489 1.27586 1.51552 1.25868 0.95746 1.02885 0.94827
0.85539 0.78491 0.78943 0.78606 1.19346 1.20522 1.19632 1.21700
0.93110 0.92985 1.50732 0.93322 1.18822 0.93711 0.91011 0.96006
1.21332 0.97588 0.92722 1.00035 1.21625 0.93646 0.91630 0.95846
0.86344 1.58989 1.27117 1.45278 1.03146 1.22416 0.81630 0.85067
0.83041 1.90630 1.61525 1.54795 1.38041 1.45829 1.44765 1.35076
1.10199 1.20943 0.84808 0.89705 1.02113 0.88023 1.22014 1.02025
1.00631 0.91307 1.21910 0.91773 0.97428 1.05694 1.21867 1.00388
0.93312 0.86726 1.45721 1.09182 1.50676 1.30928 1.21176 0.88921
0.80570 0.81734 1.90813 1.86668 1.37829 1.32121 0.92791 0.98175
0.97444 0.95126 0.92247 0.83823 0.84416 0.74512 0.89169 0.87807
0.90884 0.85683 0.87819 0.89703 0.76559
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.59 13.29 21.44 0.28 -57.30 16
2 C 0.00 0.28 5.46 84.65 0.46 0.75 16
3 Si 0.96 45.96 29.54 68.60 2.03 47.99 16
4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16
6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16
7 C -0.55 -32.71 9.11 25.60 0.23 -32.48 16
8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16
9 C 0.04 2.28 4.86 29.85 0.15 2.42 16
10 C -0.08 -3.51 4.78 30.59 0.15 -3.37 16
11 C 0.09 3.18 3.15 44.17 0.14 3.32 16
12 H 0.12 3.73 8.14 -2.38 -0.02 3.71 16
13 N -0.82 -29.74 8.44 -171.81 -1.45 -31.19 16
14 C 0.49 16.94 6.49 87.65 0.57 17.51 16
15 O -0.57 -23.58 15.45 -1.22 -0.02 -23.60 16
16 N -0.71 -18.12 4.97 -446.77 -2.22 -20.34 16
17 C 0.13 2.89 2.70 44.11 0.12 3.01 16
18 H 0.10 2.50 7.58 -2.39 -0.02 2.48 16
19 C -0.12 -1.18 5.51 30.73 0.17 -1.01 16
20 C -0.13 -0.66 6.01 30.68 0.18 -0.47 16
21 C 0.10 0.66 7.20 86.42 0.62 1.28 16
22 N -0.71 -12.29 5.46 -466.54 -2.55 -14.84 16
23 C 0.49 13.36 7.44 87.71 0.65 14.01 16
24 O -0.59 -24.14 16.53 -1.20 -0.02 -24.16 16
25 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16
26 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16
27 H 0.01 0.43 7.75 -2.38 -0.02 0.41 16
28 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16
29 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16
30 H 0.35 10.63 9.06 -89.69 -0.81 9.82 16
31 H 0.34 13.22 8.58 -89.69 -0.77 12.45 16
32 H 0.42 8.46 8.58 -92.71 -0.80 7.67 16
33 H 0.09 0.73 8.10 -2.39 -0.02 0.71 16
34 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16
35 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16
36 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16
37 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16
38 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16
39 H 0.40 6.78 8.80 -92.71 -0.82 5.96 16
Total: -1.00 -85.64 325.46 -2.60 -88.24
By element:
Atomic # 1 Polarization: 32.33 SS G_CDS: -2.10 Total: 30.23 kcal
Atomic # 6 Polarization: 1.52 SS G_CDS: 3.44 Total: 4.97 kcal
Atomic # 7 Polarization: -117.74 SS G_CDS: -5.93 Total: -123.67 kcal
Atomic # 8 Polarization: -47.72 SS G_CDS: -0.04 Total: -47.76 kcal
Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal
Total: -85.64 -2.60 -88.24 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691601002.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.986 kcal
(2) G-P(sol) polarization free energy of solvation -85.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.598 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.228 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds