Wall clock time and date at job start Mon Mar 30 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00022 * 2 1 4 4 H 1.48498 * 109.46944 * 270.00381 * 3 2 1 5 5 H 1.48498 * 109.47074 * 30.00172 * 3 2 1 6 6 H 1.48498 * 109.46835 * 150.00058 * 3 2 1 7 7 C 1.37871 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00252 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47434 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47011 * 54.99857 * 11 10 9 13 13 N 1.46901 * 109.47262 * 295.00483 * 11 10 9 14 14 C 1.50694 * 109.47339 * 175.00016 * 11 10 9 15 15 O 1.21280 * 120.00154 * 99.99821 * 14 11 10 16 16 N 1.34785 * 120.00025 * 280.00239 * 14 11 10 17 17 C 1.46496 * 119.99805 * 180.02562 * 16 14 11 18 18 H 1.08994 * 109.33436 * 35.21148 * 17 16 14 19 19 C 1.53073 * 109.40036 * 154.99944 * 17 16 14 20 20 C 1.53343 * 108.42509 * 169.02589 * 19 17 16 21 21 C 1.52918 * 108.81090 * 292.38784 * 20 19 17 22 22 N 1.46118 * 110.29094 * 50.69674 * 21 20 19 23 23 C 1.33358 * 124.17507 * 341.03192 * 22 21 20 24 24 O 1.21272 * 118.24742 * 182.15440 * 23 22 21 25 25 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47258 * 59.99757 * 9 7 2 27 27 H 1.09005 * 109.47050 * 300.00019 * 9 7 2 28 28 H 1.09007 * 109.46867 * 59.99611 * 10 9 7 29 29 H 1.09001 * 109.46872 * 300.00380 * 10 9 7 30 30 H 1.00901 * 111.00057 * 176.04765 * 13 11 10 31 31 H 1.00904 * 110.99512 * 299.99667 * 13 11 10 32 32 H 0.96993 * 119.99704 * 359.97438 * 16 14 11 33 33 H 1.09001 * 109.67279 * 49.29010 * 19 17 16 34 34 H 1.08999 * 109.67053 * 288.76185 * 19 17 16 35 35 H 1.09002 * 109.60408 * 52.22738 * 20 19 17 36 36 H 1.08997 * 109.60323 * 172.54968 * 20 19 17 37 37 H 1.08998 * 109.30513 * 171.14620 * 21 20 19 38 38 H 1.08999 * 109.30107 * 290.52391 * 21 20 19 39 39 H 0.96997 * 117.87888 * 160.98806 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7877 -5.0072 -0.8415 13 7 0.7288 -5.1181 1.2556 14 6 2.4547 -6.1298 -0.1237 15 8 2.7869 -6.7531 0.8622 16 7 2.9573 -6.4593 -1.3302 17 6 3.9042 -7.5705 -1.4506 18 1 3.6380 -8.3503 -0.7371 19 6 3.8436 -8.1386 -2.8708 20 6 5.0208 -9.1034 -3.0575 21 6 6.3230 -8.3020 -3.0377 22 7 6.3647 -7.4318 -1.8647 23 6 5.2919 -7.0775 -1.1562 24 8 5.4450 -6.3170 -0.2241 25 1 -0.4850 0.8400 0.0004 26 1 0.6239 -2.5566 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8718 -3.6043 -0.8905 30 1 0.1645 -5.9545 1.2536 31 1 1.3489 -5.1022 2.0514 32 1 2.6913 -5.9610 -2.1187 33 1 3.9164 -7.3265 -3.5942 34 1 2.9046 -8.6736 -3.0122 35 1 5.0279 -9.8327 -2.2474 36 1 4.9231 -9.6189 -4.0128 37 1 7.1686 -8.9892 -3.0113 38 1 6.3853 -7.6935 -3.9399 39 1 7.2281 -7.0907 -1.5834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691601002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:52 Heat of formation + Delta-G solvation = -120.227722 kcal Electronic energy + Delta-G solvation = -20910.340531 eV Core-core repulsion = 17657.571564 eV Total energy + Delta-G solvation = -3252.768967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.83653 -40.42266 -37.57553 -36.85999 -35.95597 -34.82347 -32.85039 -31.94312 -30.11133 -28.04389 -25.88376 -24.76357 -23.67677 -22.32718 -21.23515 -20.35529 -18.65238 -18.40342 -18.06447 -17.62530 -17.39512 -16.88657 -16.49253 -16.00495 -15.51331 -15.28568 -15.08120 -14.93634 -14.70978 -14.37650 -14.29398 -13.83029 -13.43592 -13.05820 -12.80847 -12.58536 -12.50478 -12.28537 -12.27040 -11.94116 -11.78029 -11.66117 -11.30066 -11.25205 -11.00266 -10.49935 -10.12307 -10.07266 -9.64476 -8.15061 -6.25331 1.33627 1.39721 1.41650 1.52632 1.57001 2.17673 2.36813 2.44182 3.17335 3.53051 3.55228 3.61461 3.79922 3.87554 4.00206 4.08751 4.28707 4.31101 4.52007 4.72997 4.74572 4.78292 4.93027 5.03276 5.04778 5.19712 5.22671 5.34131 5.55056 5.81357 5.83016 5.96624 6.06200 6.26362 6.30177 6.39513 6.52911 6.91954 7.11412 7.20958 7.42407 8.96137 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023632 B = 0.004155 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.554355 B = 6737.877065 C = 7341.566045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.048 0.952 9 C 0.042 3.958 10 C -0.078 4.078 11 C 0.088 3.912 12 H 0.119 0.881 13 N -0.817 5.817 14 C 0.493 3.507 15 O -0.571 6.571 16 N -0.705 5.705 17 C 0.133 3.867 18 H 0.102 0.898 19 C -0.122 4.122 20 C -0.130 4.130 21 C 0.099 3.901 22 N -0.713 5.713 23 C 0.491 3.509 24 O -0.595 6.595 25 H 0.263 0.737 26 H 0.000 1.000 27 H 0.007 0.993 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.348 0.652 31 H 0.343 0.657 32 H 0.417 0.583 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.890 -22.209 -12.895 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.067 0.933 9 C 0.004 3.996 10 C -0.117 4.117 11 C -0.027 4.027 12 H 0.137 0.863 13 N -0.345 5.345 14 C 0.278 3.722 15 O -0.450 6.450 16 N -0.359 5.359 17 C 0.024 3.976 18 H 0.120 0.880 19 C -0.160 4.160 20 C -0.168 4.168 21 C -0.023 4.023 22 N -0.365 5.365 23 C 0.276 3.724 24 O -0.474 6.474 25 H 0.072 0.928 26 H 0.018 0.982 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.255 0.745 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.461 -21.562 -12.005 26.430 hybrid contribution 1.203 0.573 0.377 1.385 sum 10.664 -20.989 -11.628 26.258 Atomic orbital electron populations 1.70093 1.07489 1.27586 1.51552 1.25868 0.95746 1.02885 0.94827 0.85539 0.78491 0.78943 0.78606 1.19346 1.20522 1.19632 1.21700 0.93110 0.92985 1.50732 0.93322 1.18822 0.93711 0.91011 0.96006 1.21332 0.97588 0.92722 1.00035 1.21625 0.93646 0.91630 0.95846 0.86344 1.58989 1.27117 1.45278 1.03146 1.22416 0.81630 0.85067 0.83041 1.90630 1.61525 1.54795 1.38041 1.45829 1.44765 1.35076 1.10199 1.20943 0.84808 0.89705 1.02113 0.88023 1.22014 1.02025 1.00631 0.91307 1.21910 0.91773 0.97428 1.05694 1.21867 1.00388 0.93312 0.86726 1.45721 1.09182 1.50676 1.30928 1.21176 0.88921 0.80570 0.81734 1.90813 1.86668 1.37829 1.32121 0.92791 0.98175 0.97444 0.95126 0.92247 0.83823 0.84416 0.74512 0.89169 0.87807 0.90884 0.85683 0.87819 0.89703 0.76559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.44 0.28 -57.30 16 2 C 0.00 0.28 5.46 84.65 0.46 0.75 16 3 Si 0.96 45.96 29.54 68.60 2.03 47.99 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.55 -32.71 9.11 25.60 0.23 -32.48 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.28 4.86 29.85 0.15 2.42 16 10 C -0.08 -3.51 4.78 30.59 0.15 -3.37 16 11 C 0.09 3.18 3.15 44.17 0.14 3.32 16 12 H 0.12 3.73 8.14 -2.38 -0.02 3.71 16 13 N -0.82 -29.74 8.44 -171.81 -1.45 -31.19 16 14 C 0.49 16.94 6.49 87.65 0.57 17.51 16 15 O -0.57 -23.58 15.45 -1.22 -0.02 -23.60 16 16 N -0.71 -18.12 4.97 -446.77 -2.22 -20.34 16 17 C 0.13 2.89 2.70 44.11 0.12 3.01 16 18 H 0.10 2.50 7.58 -2.39 -0.02 2.48 16 19 C -0.12 -1.18 5.51 30.73 0.17 -1.01 16 20 C -0.13 -0.66 6.01 30.68 0.18 -0.47 16 21 C 0.10 0.66 7.20 86.42 0.62 1.28 16 22 N -0.71 -12.29 5.46 -466.54 -2.55 -14.84 16 23 C 0.49 13.36 7.44 87.71 0.65 14.01 16 24 O -0.59 -24.14 16.53 -1.20 -0.02 -24.16 16 25 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 27 H 0.01 0.43 7.75 -2.38 -0.02 0.41 16 28 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 30 H 0.35 10.63 9.06 -89.69 -0.81 9.82 16 31 H 0.34 13.22 8.58 -89.69 -0.77 12.45 16 32 H 0.42 8.46 8.58 -92.71 -0.80 7.67 16 33 H 0.09 0.73 8.10 -2.39 -0.02 0.71 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 36 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.40 6.78 8.80 -92.71 -0.82 5.96 16 Total: -1.00 -85.64 325.46 -2.60 -88.24 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -2.10 Total: 30.23 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 3.44 Total: 4.97 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -5.93 Total: -123.67 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.04 Total: -47.76 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -85.64 -2.60 -88.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.986 kcal (2) G-P(sol) polarization free energy of solvation -85.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds