Wall clock time and date at job start Mon Mar 30 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00410 * 2 1 4 4 H 1.48499 * 109.47065 * 270.00451 * 3 2 1 5 5 H 1.48496 * 109.46918 * 29.99940 * 3 2 1 6 6 H 1.48498 * 109.47129 * 150.00312 * 3 2 1 7 7 C 1.37882 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99757 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99861 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47195 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47561 * 304.99890 * 11 10 9 13 13 N 1.46897 * 109.47319 * 65.00226 * 11 10 9 14 14 C 1.50698 * 109.47176 * 185.00042 * 11 10 9 15 15 O 1.21282 * 120.00332 * 259.99954 * 14 11 10 16 16 N 1.34778 * 120.00336 * 80.00088 * 14 11 10 17 17 C 1.46500 * 120.00313 * 180.02562 * 16 14 11 18 18 H 1.08999 * 109.32745 * 325.20874 * 17 16 14 19 19 C 1.53070 * 109.39809 * 205.42856 * 17 16 14 20 20 C 1.53350 * 108.43152 * 190.98704 * 19 17 16 21 21 C 1.52922 * 108.66450 * 67.53035 * 20 19 17 22 22 N 1.45748 * 110.48408 * 309.22784 * 21 20 19 23 23 C 1.33347 * 124.11183 * 19.10338 * 22 21 20 24 24 O 1.21283 * 118.25100 * 177.75412 * 23 22 21 25 25 H 0.97000 * 119.99770 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46911 * 59.99848 * 9 7 2 27 27 H 1.09002 * 109.47259 * 299.99609 * 9 7 2 28 28 H 1.09002 * 109.46761 * 59.99620 * 10 9 7 29 29 H 1.09002 * 109.46888 * 300.00058 * 10 9 7 30 30 H 1.00899 * 110.99801 * 296.04292 * 13 11 10 31 31 H 1.00900 * 110.99993 * 59.99968 * 13 11 10 32 32 H 0.97003 * 119.99554 * 359.97438 * 16 14 11 33 33 H 1.08998 * 109.67262 * 310.69804 * 19 17 16 34 34 H 1.09000 * 109.67513 * 71.23452 * 19 17 16 35 35 H 1.08991 * 109.62262 * 307.76432 * 20 19 17 36 36 H 1.09004 * 109.72733 * 187.35489 * 20 19 17 37 37 H 1.08998 * 109.29840 * 188.91801 * 21 20 19 38 38 H 1.08998 * 109.13307 * 69.43663 * 21 20 19 39 39 H 0.97003 * 117.94473 * 199.07298 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5513 -2.6368 -0.0022 12 1 5.9141 -2.0477 -0.8445 13 7 6.0421 -2.0511 1.2524 14 6 6.0535 -4.0522 -0.1259 15 8 6.4284 -4.6511 0.8598 16 7 6.0861 -4.6528 -1.3321 17 6 6.5738 -6.0290 -1.4523 18 1 7.3776 -6.1909 -0.7341 19 6 7.1045 -6.2584 -2.8696 20 6 7.3501 -7.7603 -3.0582 21 6 6.0020 -8.4820 -3.0459 22 7 5.2228 -8.0874 -1.8791 23 6 5.4499 -6.9832 -1.1668 24 8 4.7090 -6.7362 -0.2389 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6806 0.8888 27 1 3.8745 -0.6802 -0.8912 28 1 3.6576 -3.1507 -0.8907 29 1 3.6584 -3.1503 0.8893 30 1 5.7728 -1.0817 1.3285 31 1 5.7192 -2.5797 2.0488 32 1 5.7860 -4.1740 -2.1205 33 1 6.3697 -5.9129 -3.5969 34 1 8.0390 -5.7137 -3.0042 35 1 7.9726 -8.1342 -2.2454 36 1 7.8496 -7.9346 -4.0113 37 1 6.1701 -9.5586 -3.0196 38 1 5.4511 -8.2254 -3.9507 39 1 4.4930 -8.6640 -1.6037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691601003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:54 Heat of formation + Delta-G solvation = -118.173642 kcal Electronic energy + Delta-G solvation = -20960.769336 eV Core-core repulsion = 17708.089441 eV Total energy + Delta-G solvation = -3252.679895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.80482 -40.35703 -37.57814 -37.17937 -35.90900 -34.82558 -32.84815 -32.09976 -30.15876 -28.28187 -25.90704 -24.74174 -23.64938 -22.21709 -21.23848 -20.34100 -19.10419 -18.40393 -18.31923 -17.60722 -17.33550 -16.33949 -16.06848 -16.01219 -15.71543 -15.46245 -15.18327 -14.81523 -14.67666 -14.64417 -14.42124 -14.20022 -13.51684 -13.09388 -13.02862 -12.71159 -12.53240 -12.25895 -12.10997 -11.91670 -11.86504 -11.70717 -11.44034 -11.26285 -10.78538 -10.78006 -10.08881 -10.05905 -9.69471 -8.31009 -6.37573 1.37521 1.37751 1.40977 1.52520 1.63096 2.15305 2.36193 2.38844 3.04134 3.55465 3.60744 3.71661 3.76009 3.87911 4.01645 4.06134 4.17346 4.31240 4.53686 4.55369 4.70401 4.74680 4.81032 4.90490 5.05600 5.06570 5.23588 5.33373 5.36930 5.44018 5.60892 5.82317 6.01626 6.23879 6.28258 6.44826 6.49211 6.70665 7.16461 7.26386 7.27099 8.86367 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026990 B = 0.004171 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.164771 B = 6711.988161 C = 7097.259108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.539 4.539 8 H 0.018 0.982 9 C -0.003 4.003 10 C -0.115 4.115 11 C 0.083 3.917 12 H 0.129 0.871 13 N -0.827 5.827 14 C 0.528 3.472 15 O -0.562 6.562 16 N -0.708 5.708 17 C 0.136 3.864 18 H 0.103 0.897 19 C -0.121 4.121 20 C -0.130 4.130 21 C 0.099 3.901 22 N -0.713 5.713 23 C 0.490 3.510 24 O -0.596 6.596 25 H 0.267 0.733 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.029 0.971 30 H 0.355 0.645 31 H 0.342 0.658 32 H 0.417 0.583 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.858 -14.223 -12.834 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.577 4.577 8 H 0.037 0.963 9 C -0.041 4.041 10 C -0.155 4.155 11 C -0.032 4.032 12 H 0.147 0.853 13 N -0.359 5.359 14 C 0.315 3.685 15 O -0.439 6.439 16 N -0.362 5.362 17 C 0.027 3.973 18 H 0.121 0.879 19 C -0.159 4.159 20 C -0.168 4.168 21 C -0.024 4.024 22 N -0.365 5.365 23 C 0.275 3.725 24 O -0.476 6.476 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.255 0.745 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 20.549 -14.438 -12.017 27.841 hybrid contribution -2.271 0.506 0.452 2.370 sum 18.279 -13.931 -11.565 25.728 Atomic orbital electron populations 1.70099 1.08696 1.28352 1.52350 1.26155 0.95691 1.04011 0.93705 0.85519 0.79607 0.77118 0.79546 1.18538 1.21452 1.16001 1.21440 0.92346 0.92786 1.51154 0.96344 1.19495 0.93708 0.93380 0.97489 1.21973 0.93984 0.98749 1.00829 1.21437 0.92818 0.92261 0.96676 0.85325 1.58775 1.66236 1.07625 1.03219 1.20826 0.76130 0.88620 0.82972 1.90624 1.48301 1.66756 1.38182 1.45655 1.67028 1.13520 1.10009 1.20914 0.93438 0.80655 1.02250 0.87909 1.22013 1.03664 0.98958 0.91282 1.21919 0.96450 0.92704 1.05722 1.21808 0.92396 1.01327 0.86847 1.45644 1.35996 1.23748 1.31072 1.21237 0.86617 0.82994 0.81648 1.90817 1.49327 1.75005 1.32441 0.92440 0.95480 0.94536 0.92543 0.95198 0.82918 0.84494 0.74516 0.89139 0.87669 0.90859 0.85619 0.87906 0.89785 0.76590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 2 C 0.00 0.05 5.47 84.66 0.46 0.51 16 3 Si 0.96 43.37 27.47 68.60 1.88 45.25 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.24 -9.59 6.54 99.48 0.65 -8.93 16 7 C -0.54 -31.83 9.66 25.60 0.25 -31.58 16 8 H 0.02 1.23 7.99 -2.91 -0.02 1.20 16 9 C 0.00 -0.15 3.81 29.85 0.11 -0.04 16 10 C -0.12 -4.76 4.78 30.59 0.15 -4.61 16 11 C 0.08 2.75 3.21 44.17 0.14 2.89 16 12 H 0.13 3.41 8.14 -2.39 -0.02 3.39 16 13 N -0.83 -27.29 8.94 -171.82 -1.54 -28.82 16 14 C 0.53 18.20 6.51 87.66 0.57 18.77 16 15 O -0.56 -23.86 15.48 -2.14 -0.03 -23.90 16 16 N -0.71 -18.12 4.96 -446.77 -2.22 -20.33 16 17 C 0.14 3.00 2.70 44.10 0.12 3.11 16 18 H 0.10 2.58 7.56 -2.39 -0.02 2.56 16 19 C -0.12 -1.17 5.51 30.74 0.17 -1.00 16 20 C -0.13 -0.69 6.02 30.69 0.18 -0.50 16 21 C 0.10 0.70 7.17 86.49 0.62 1.32 16 22 N -0.71 -12.74 5.45 -467.34 -2.55 -15.29 16 23 C 0.49 13.61 7.44 87.71 0.65 14.26 16 24 O -0.60 -24.68 16.58 -2.15 -0.04 -24.71 16 25 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 26 H 0.03 1.18 5.93 -2.39 -0.01 1.17 16 27 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.36 10.87 7.55 -89.69 -0.68 10.19 16 31 H 0.34 12.29 8.58 -89.69 -0.77 11.52 16 32 H 0.42 8.13 8.59 -92.71 -0.80 7.33 16 33 H 0.09 0.72 8.10 -2.39 -0.02 0.70 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.49 8.12 -2.39 -0.02 0.47 16 36 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.40 7.10 8.80 -92.71 -0.82 6.28 16 Total: -1.00 -87.98 319.95 -2.77 -90.75 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -2.01 Total: 34.67 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 3.43 Total: 3.13 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -6.00 Total: -125.19 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.07 Total: -48.61 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Total: -87.98 -2.77 -90.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.427 kcal (2) G-P(sol) polarization free energy of solvation -87.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds