Wall clock time and date at job start Mon Mar 30 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47017 * 55.00082 * 11 10 9 13 13 N 1.46904 * 109.47449 * 295.00426 * 11 10 9 14 14 C 1.50698 * 109.47721 * 175.00208 * 11 10 9 15 15 O 1.21279 * 120.00178 * 99.99093 * 14 11 10 16 16 N 1.34776 * 119.99790 * 280.00489 * 14 11 10 17 17 C 1.47426 * 125.65085 * 359.68400 * 16 14 11 18 18 C 1.55135 * 104.72192 * 155.81783 * 17 16 14 19 19 C 1.55156 * 101.48323 * 37.29771 * 18 17 16 20 20 C 1.47027 * 125.64610 * 179.97438 * 16 14 11 21 21 H 1.08992 * 109.88367 * 300.43761 * 20 16 14 22 22 C 1.50698 * 109.87901 * 61.60587 * 20 16 14 23 23 N 1.34776 * 119.99698 * 179.97438 * 22 20 16 24 24 O 1.21278 * 120.00211 * 359.97438 * 22 20 16 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 1.00898 * 110.99372 * 300.00401 * 13 11 10 31 31 H 1.00904 * 110.99944 * 63.94834 * 13 11 10 32 32 H 1.08998 * 110.36628 * 274.75323 * 17 16 14 33 33 H 1.09006 * 110.36665 * 37.07213 * 17 16 14 34 34 H 1.08999 * 111.18903 * 279.19105 * 18 17 16 35 35 H 1.09000 * 110.93099 * 155.28751 * 18 17 16 36 36 H 1.08997 * 110.71438 * 205.96521 * 19 18 17 37 37 H 1.08997 * 110.87099 * 82.76414 * 19 18 17 38 38 H 0.97002 * 120.00149 * 359.97438 * 23 22 20 39 39 H 0.97005 * 120.00079 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7880 -5.0073 -0.8405 13 7 0.7290 -5.1182 1.2567 14 6 2.4549 -6.1299 -0.1226 15 8 2.7871 -6.7530 0.8634 16 7 2.9574 -6.4593 -1.3290 17 6 2.6362 -5.7935 -2.6045 18 6 3.8580 -6.0789 -3.5169 19 6 4.2194 -7.5302 -3.1041 20 6 3.9123 -7.5460 -1.5918 21 1 4.8285 -7.3794 -1.0256 22 6 3.3017 -8.8688 -1.2068 23 7 4.0056 -10.0073 -1.3648 24 8 2.1770 -8.9090 -0.7547 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8902 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8905 30 1 1.3491 -5.1021 2.0525 31 1 0.0242 -4.4001 1.3329 32 1 1.7299 -6.2180 -3.0363 33 1 2.5187 -4.7204 -2.4533 34 1 4.6791 -5.3953 -3.3011 35 1 3.5780 -6.0303 -4.5692 36 1 5.2753 -7.7309 -3.2851 37 1 3.5952 -8.2510 -3.6322 38 1 4.9050 -9.9752 -1.7267 39 1 3.6127 -10.8588 -1.1166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691601586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:00 Heat of formation + Delta-G solvation = -81.976660 kcal Electronic energy + Delta-G solvation = -21288.853547 eV Core-core repulsion = 18037.743270 eV Total energy + Delta-G solvation = -3251.110276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63073 -38.71332 -37.12481 -35.36621 -33.80906 -32.81919 -31.55460 -29.85899 -29.59788 -26.50383 -24.57305 -23.30011 -21.91817 -20.98882 -20.10731 -18.97355 -17.67666 -17.31221 -16.94885 -16.25532 -15.71948 -14.88196 -14.84817 -14.57863 -14.30922 -14.12491 -13.74206 -13.53648 -13.27548 -13.12170 -12.59315 -12.43472 -12.01253 -11.86275 -11.62008 -11.44018 -11.14823 -10.99219 -10.88421 -10.66794 -10.01236 -9.93097 -9.85186 -9.76795 -9.24583 -9.13508 -8.54955 -8.42279 -8.07272 -6.06775 -4.09993 2.61544 2.83532 3.12950 3.27494 3.34546 3.37767 3.54170 4.21851 4.33954 4.40476 4.60745 4.88081 5.00130 5.07294 5.26957 5.27427 5.29805 5.38984 5.59526 5.61221 5.69231 5.71465 5.83283 5.96395 6.25834 6.35825 6.57260 6.66962 6.90824 7.18968 7.50877 7.55949 7.64803 7.76272 7.90423 8.00977 8.21508 8.33104 8.57238 8.95997 9.54748 11.04121 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.004421 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.294020 B = 6331.916297 C = 6902.612633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.138 4.138 11 C 0.082 3.918 12 H 0.095 0.905 13 N -0.829 5.829 14 C 0.551 3.449 15 O -0.526 6.526 16 N -0.607 5.607 17 C 0.093 3.907 18 C -0.130 4.130 19 C -0.123 4.123 20 C 0.119 3.881 21 H 0.099 0.901 22 C 0.506 3.494 23 N -0.859 5.859 24 O -0.514 6.514 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.344 0.656 31 H 0.354 0.646 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.398 0.602 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.131 -15.940 -9.271 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.033 4.033 12 H 0.113 0.887 13 N -0.361 5.361 14 C 0.340 3.660 15 O -0.400 6.400 16 N -0.343 5.343 17 C -0.030 4.030 18 C -0.168 4.168 19 C -0.161 4.161 20 C 0.010 3.990 21 H 0.117 0.883 22 C 0.289 3.711 23 N -0.425 5.425 24 O -0.387 6.387 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.226 0.774 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.097 -16.647 -8.602 20.829 hybrid contribution 1.144 1.487 0.068 1.878 sum 10.241 -15.160 -8.534 20.188 Atomic orbital electron populations 1.69950 1.06018 1.26758 1.50430 1.25009 0.94849 0.99261 0.95162 0.86592 0.79867 0.83430 0.78113 1.20624 1.21169 1.19905 1.21177 0.92985 0.90881 1.51096 0.92739 1.19103 0.93711 0.91050 0.97407 1.22412 0.99909 0.94035 1.01404 1.21402 0.94457 0.91887 0.95521 0.88733 1.58697 1.18444 1.55880 1.03084 1.20539 0.80499 0.84156 0.80799 1.90621 1.59662 1.53335 1.36419 1.48230 1.46112 1.32328 1.07647 1.22538 0.97744 0.99404 0.83335 1.22825 0.98343 0.95568 1.00069 1.22641 1.02741 0.98790 0.91934 1.21422 0.93674 0.86117 0.97739 0.88341 1.20982 0.86345 0.86248 0.77519 1.43818 1.19911 1.09200 1.69543 1.90802 1.18852 1.86744 1.42272 0.92886 0.96322 0.96368 0.92480 0.92722 0.84232 0.83104 0.91189 0.88816 0.89848 0.89324 0.89219 0.90154 0.77411 0.76968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 10 C -0.14 -2.80 4.63 -26.73 -0.12 -2.93 16 11 C 0.08 1.56 2.48 -68.86 -0.17 1.39 16 12 H 0.09 1.74 7.67 -51.92 -0.40 1.34 16 13 N -0.83 -15.97 8.94 -5.65 -0.05 -16.02 16 14 C 0.55 10.48 6.26 -10.99 -0.07 10.41 16 15 O -0.53 -11.63 15.53 -8.41 -0.13 -11.76 16 16 N -0.61 -9.11 2.84 -164.18 -0.47 -9.57 16 17 C 0.09 1.10 6.40 -2.41 -0.02 1.08 16 18 C -0.13 -1.04 7.10 -24.46 -0.17 -1.21 16 19 C -0.12 -0.89 6.40 -24.90 -0.16 -1.05 16 20 C 0.12 1.40 3.26 -68.10 -0.22 1.17 16 21 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 22 C 0.51 6.81 6.93 -10.99 -0.08 6.73 16 23 N -0.86 -6.97 8.81 31.22 0.27 -6.70 16 24 O -0.51 -9.85 15.90 -8.41 -0.13 -9.98 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 28 H 0.06 1.09 6.61 -51.93 -0.34 0.75 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.34 6.64 8.58 -39.29 -0.34 6.30 16 31 H 0.35 6.66 7.55 -39.29 -0.30 6.36 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.20 6.06 -51.93 -0.31 0.88 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.55 7.84 -51.93 -0.41 0.15 16 38 H 0.40 1.74 8.81 -40.82 -0.36 1.38 16 39 H 0.40 2.96 8.93 -40.82 -0.36 2.60 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -36.78 320.90 -7.19 -43.97 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.68 Total: 11.47 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.55 Total: 2.94 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.49 Total: -57.67 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.26 Total: -21.74 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.78 -7.19 -43.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.010 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds