Wall clock time and date at job start Mon Mar 30 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47017 * 55.00082 * 11 10 9 13 13 N 1.46904 * 109.47449 * 295.00426 * 11 10 9 14 14 C 1.50698 * 109.47721 * 175.00208 * 11 10 9 15 15 O 1.21279 * 120.00178 * 99.99093 * 14 11 10 16 16 N 1.34776 * 119.99790 * 280.00489 * 14 11 10 17 17 C 1.47426 * 125.65085 * 359.68400 * 16 14 11 18 18 C 1.55135 * 104.72192 * 155.81783 * 17 16 14 19 19 C 1.55156 * 101.48323 * 37.29771 * 18 17 16 20 20 C 1.47027 * 125.64610 * 179.97438 * 16 14 11 21 21 H 1.08992 * 109.88367 * 300.43761 * 20 16 14 22 22 C 1.50698 * 109.87901 * 61.60587 * 20 16 14 23 23 N 1.34776 * 119.99698 * 179.97438 * 22 20 16 24 24 O 1.21278 * 120.00211 * 359.97438 * 22 20 16 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 1.00898 * 110.99372 * 300.00401 * 13 11 10 31 31 H 1.00904 * 110.99944 * 63.94834 * 13 11 10 32 32 H 1.08998 * 110.36628 * 274.75323 * 17 16 14 33 33 H 1.09006 * 110.36665 * 37.07213 * 17 16 14 34 34 H 1.08999 * 111.18903 * 279.19105 * 18 17 16 35 35 H 1.09000 * 110.93099 * 155.28751 * 18 17 16 36 36 H 1.08997 * 110.71438 * 205.96521 * 19 18 17 37 37 H 1.08997 * 110.87099 * 82.76414 * 19 18 17 38 38 H 0.97002 * 120.00149 * 359.97438 * 23 22 20 39 39 H 0.97005 * 120.00079 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7880 -5.0073 -0.8405 13 7 0.7290 -5.1182 1.2567 14 6 2.4549 -6.1299 -0.1226 15 8 2.7871 -6.7530 0.8634 16 7 2.9574 -6.4593 -1.3290 17 6 2.6362 -5.7935 -2.6045 18 6 3.8580 -6.0789 -3.5169 19 6 4.2194 -7.5302 -3.1041 20 6 3.9123 -7.5460 -1.5918 21 1 4.8285 -7.3794 -1.0256 22 6 3.3017 -8.8688 -1.2068 23 7 4.0056 -10.0073 -1.3648 24 8 2.1770 -8.9090 -0.7547 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8902 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8905 30 1 1.3491 -5.1021 2.0525 31 1 0.0242 -4.4001 1.3329 32 1 1.7299 -6.2180 -3.0363 33 1 2.5187 -4.7204 -2.4533 34 1 4.6791 -5.3953 -3.3011 35 1 3.5780 -6.0303 -4.5692 36 1 5.2753 -7.7309 -3.2851 37 1 3.5952 -8.2510 -3.6322 38 1 4.9050 -9.9752 -1.7267 39 1 3.6127 -10.8588 -1.1166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691601586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:59 Heat of formation + Delta-G solvation = -112.429611 kcal Electronic energy + Delta-G solvation = -21290.174086 eV Core-core repulsion = 18037.743270 eV Total energy + Delta-G solvation = -3252.430815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74905 -39.98920 -38.20402 -37.05842 -34.85276 -34.75357 -32.56197 -31.71748 -30.51269 -28.17741 -26.08394 -24.64926 -22.84318 -22.37346 -21.42445 -20.15320 -19.01563 -18.39123 -18.23891 -17.85509 -16.95717 -16.46621 -16.07756 -15.95861 -15.75123 -15.46893 -15.21889 -14.68790 -14.56148 -14.18130 -14.09737 -13.90068 -13.46111 -13.21309 -12.92010 -12.76393 -12.66431 -12.51253 -12.13870 -11.83752 -11.72748 -11.70735 -11.30331 -11.05902 -10.74757 -10.65559 -10.55465 -9.76909 -9.62672 -8.20329 -6.31419 1.40708 1.41977 1.52525 1.55640 1.62796 1.87704 2.41072 2.63093 3.13240 3.37912 3.57587 3.70237 3.77446 3.97165 4.07722 4.15963 4.19259 4.21900 4.52260 4.59727 4.75102 4.82006 4.85371 4.92529 5.05688 5.09724 5.27878 5.33602 5.46300 5.63154 5.80066 5.89467 6.03159 6.20561 6.40083 6.44177 6.48647 6.83550 7.15791 7.37872 7.37980 8.90701 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.004421 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.294020 B = 6331.916297 C = 6902.612633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.117 4.117 11 C 0.088 3.912 12 H 0.097 0.903 13 N -0.832 5.832 14 C 0.545 3.455 15 O -0.566 6.566 16 N -0.607 5.607 17 C 0.079 3.921 18 C -0.119 4.119 19 C -0.108 4.108 20 C 0.107 3.893 21 H 0.108 0.892 22 C 0.500 3.500 23 N -0.832 5.832 24 O -0.582 6.582 25 H 0.264 0.736 26 H 0.001 0.999 27 H -0.001 1.001 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.344 0.656 31 H 0.353 0.647 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.087 0.913 38 H 0.420 0.580 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.630 -16.239 -11.288 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.156 4.156 11 C -0.028 4.028 12 H 0.115 0.885 13 N -0.364 5.364 14 C 0.334 3.666 15 O -0.444 6.444 16 N -0.341 5.341 17 C -0.043 4.043 18 C -0.157 4.157 19 C -0.146 4.146 20 C 0.000 4.000 21 H 0.126 0.874 22 C 0.284 3.716 23 N -0.397 5.397 24 O -0.461 6.461 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.150 0.850 37 H 0.106 0.894 38 H 0.252 0.748 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 11.674 -16.987 -10.694 23.220 hybrid contribution 0.374 1.508 0.652 1.685 sum 12.048 -15.479 -10.042 22.036 Atomic orbital electron populations 1.70074 1.07626 1.27797 1.51304 1.25893 0.95707 1.03079 0.94654 0.85498 0.78568 0.78697 0.78594 1.19445 1.20978 1.19133 1.21586 0.93385 0.92189 1.50962 0.92460 1.18954 0.93955 0.92075 0.95584 1.22125 0.98785 0.93243 1.01490 1.21318 0.94496 0.91627 0.95322 0.88546 1.58705 1.18556 1.55789 1.03363 1.20374 0.80536 0.83931 0.81799 1.90586 1.61142 1.54614 1.38057 1.48256 1.45539 1.32988 1.07291 1.22810 1.00167 0.98385 0.82901 1.22850 0.96351 0.96069 1.00431 1.22735 1.05479 0.98404 0.87947 1.21847 0.92726 0.84196 1.01230 0.87434 1.21346 0.85704 0.87857 0.76668 1.43575 1.20416 1.08112 1.67609 1.90779 1.21832 1.87749 1.45692 0.92734 0.98066 0.98240 0.91125 0.93699 0.84335 0.83209 0.91086 0.90158 0.89194 0.86652 0.85010 0.89396 0.74837 0.76282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 2 C 0.01 0.28 5.46 84.66 0.46 0.75 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.59 4.74 29.85 0.14 1.74 16 10 C -0.12 -4.83 4.63 30.59 0.14 -4.68 16 11 C 0.09 3.41 2.48 44.17 0.11 3.52 16 12 H 0.10 3.67 7.67 -2.38 -0.02 3.66 16 13 N -0.83 -33.43 8.94 -171.79 -1.54 -34.97 16 14 C 0.54 21.10 6.26 87.66 0.55 21.65 16 15 O -0.57 -25.69 15.53 10.33 0.16 -25.53 16 16 N -0.61 -17.85 2.84 -791.73 -2.25 -20.09 16 17 C 0.08 1.78 6.40 86.93 0.56 2.34 16 18 C -0.12 -1.47 7.10 32.07 0.23 -1.24 16 19 C -0.11 -1.10 6.40 31.78 0.20 -0.90 16 20 C 0.11 2.31 3.26 44.59 0.15 2.45 16 21 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 22 C 0.50 12.90 6.93 87.66 0.61 13.51 16 23 N -0.83 -11.60 8.81 -173.54 -1.53 -13.13 16 24 O -0.58 -22.69 15.90 10.34 0.16 -22.52 16 25 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.00 -0.04 6.87 -2.39 -0.02 -0.05 16 28 H 0.07 2.70 6.61 -2.39 -0.02 2.68 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.34 13.84 8.58 -89.70 -0.77 13.07 16 31 H 0.35 13.96 7.55 -89.69 -0.68 13.29 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.00 6.06 -2.38 -0.01 1.99 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.09 0.83 7.84 -2.39 -0.02 0.81 16 38 H 0.42 2.18 8.81 -92.71 -0.82 1.37 16 39 H 0.41 5.27 8.93 -92.70 -0.83 4.44 16 Total: -1.00 -82.63 320.90 -1.28 -83.91 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -1.98 Total: 32.41 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 3.38 Total: 9.32 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -5.03 Total: -122.89 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: 0.32 Total: -48.05 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -82.63 -1.28 -83.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.521 kcal (2) G-P(sol) polarization free energy of solvation -82.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds