Wall clock time and date at job start Mon Mar 30 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46902 * 304.99868 * 11 10 9 13 13 N 1.46897 * 109.47378 * 64.99832 * 11 10 9 14 14 C 1.50700 * 109.47090 * 184.99901 * 11 10 9 15 15 O 1.21282 * 120.00167 * 259.99698 * 14 11 10 16 16 N 1.34779 * 119.99988 * 80.00415 * 14 11 10 17 17 C 1.47429 * 125.64923 * 359.68089 * 16 14 11 18 18 C 1.55133 * 104.72063 * 155.82422 * 17 16 14 19 19 C 1.55155 * 101.48460 * 37.29949 * 18 17 16 20 20 C 1.47024 * 125.65111 * 180.02562 * 16 14 11 21 21 H 1.09003 * 109.87456 * 300.43368 * 20 16 14 22 22 C 1.50703 * 109.88272 * 61.59341 * 20 16 14 23 23 N 1.34778 * 119.99786 * 180.02562 * 22 20 16 24 24 O 1.21281 * 120.00155 * 0.02562 * 22 20 16 25 25 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 27 27 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 28 28 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 29 29 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 30 30 H 1.00896 * 111.00078 * 60.00144 * 13 11 10 31 31 H 1.00899 * 111.00098 * 183.95517 * 13 11 10 32 32 H 1.08996 * 110.36897 * 274.75804 * 17 16 14 33 33 H 1.09001 * 110.36296 * 37.08012 * 17 16 14 34 34 H 1.08994 * 111.18923 * 279.19497 * 18 17 16 35 35 H 1.08999 * 110.93475 * 155.29629 * 18 17 16 36 36 H 1.09001 * 110.71435 * 205.96718 * 19 18 17 37 37 H 1.08991 * 110.87278 * 82.76607 * 19 18 17 38 38 H 0.97005 * 119.99669 * 0.02562 * 23 22 20 39 39 H 0.96999 * 120.00017 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 1 0.7874 -5.0069 0.8423 13 7 0.7301 -5.1187 -1.2548 14 6 2.4550 -6.1297 0.1263 15 8 2.7880 -6.7534 -0.8592 16 7 2.9566 -6.4586 1.3332 17 6 2.6442 -5.7840 2.6064 18 6 2.9263 -6.8504 3.6972 19 6 4.1772 -7.5619 3.1174 20 6 3.9113 -7.5450 1.5974 21 1 3.4839 -8.4980 1.2853 22 6 5.1973 -7.2891 0.8546 23 7 6.2179 -8.1638 0.9531 24 8 5.3139 -6.2960 0.1682 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6248 -2.5571 -0.8896 28 1 2.8727 -3.6046 -0.8877 29 1 2.8714 -3.6038 0.8922 30 1 1.3508 -5.1031 -2.0501 31 1 0.1658 -5.9551 -1.2529 32 1 3.2897 -4.9167 2.7445 33 1 1.5961 -5.4855 2.6303 34 1 2.0918 -7.5448 3.7944 35 1 3.1529 -6.3789 4.6534 36 1 4.2441 -8.5855 3.4861 37 1 5.0848 -7.0075 3.3559 38 1 6.1245 -8.9583 1.5018 39 1 7.0458 -7.9990 0.4753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691601590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:04 Heat of formation + Delta-G solvation = -85.104164 kcal Electronic energy + Delta-G solvation = -21422.298235 eV Core-core repulsion = 18171.052340 eV Total energy + Delta-G solvation = -3251.245895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75420 -38.85468 -37.27756 -35.24221 -33.86833 -32.98230 -31.68645 -29.90543 -29.66135 -26.19615 -24.41281 -23.07715 -22.02124 -21.06523 -20.29316 -19.08448 -17.63495 -17.45670 -16.96201 -16.45992 -15.73385 -15.57856 -15.04577 -14.75521 -14.16213 -13.91821 -13.62005 -13.56622 -13.50764 -12.97246 -12.68382 -12.45590 -12.05885 -11.99100 -11.58498 -11.38529 -11.24743 -10.73503 -10.62523 -10.15896 -10.07522 -10.02218 -9.83159 -9.81647 -9.57787 -8.68554 -8.45092 -8.29279 -8.15415 -6.22205 -3.89676 2.55998 2.67534 2.99881 3.45515 3.51636 3.54693 3.72860 4.12673 4.23156 4.51132 4.65507 4.78070 4.87157 4.90619 5.04610 5.17165 5.29641 5.38743 5.51555 5.55055 5.56191 5.65638 5.84564 5.88734 6.13285 6.46542 6.62173 6.68851 7.04573 7.13469 7.36234 7.56417 7.60219 7.76930 7.82381 8.15733 8.34315 8.38411 8.62579 9.04162 9.81816 11.18889 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.004716 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.369303 B = 5936.222326 C = 6089.171372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 1.067 2.933 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.601 4.601 8 H 0.045 0.955 9 C 0.020 3.980 10 C -0.084 4.084 11 C 0.084 3.916 12 H 0.095 0.905 13 N -0.808 5.808 14 C 0.508 3.492 15 O -0.541 6.541 16 N -0.603 5.603 17 C 0.096 3.904 18 C -0.130 4.130 19 C -0.123 4.123 20 C 0.116 3.884 21 H 0.098 0.902 22 C 0.505 3.495 23 N -0.859 5.859 24 O -0.511 6.511 25 H 0.270 0.730 26 H 0.002 0.998 27 H 0.025 0.975 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.349 0.651 31 H 0.333 0.667 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.398 0.602 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.114 -20.472 9.851 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.189 4.189 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.640 4.640 8 H 0.063 0.937 9 C -0.017 4.017 10 C -0.123 4.123 11 C -0.032 4.032 12 H 0.113 0.887 13 N -0.336 5.336 14 C 0.297 3.703 15 O -0.418 6.418 16 N -0.338 5.338 17 C -0.027 4.027 18 C -0.168 4.168 19 C -0.161 4.161 20 C 0.007 3.993 21 H 0.115 0.885 22 C 0.287 3.713 23 N -0.425 5.425 24 O -0.384 6.384 25 H 0.080 0.920 26 H 0.021 0.979 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.225 0.775 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.556 -17.692 8.994 21.237 hybrid contribution 1.313 -3.059 -0.021 3.329 sum 8.869 -20.751 8.973 24.285 Atomic orbital electron populations 1.70758 1.06816 1.30683 1.46954 1.25766 0.96584 1.02473 0.94032 0.83583 0.74876 0.75573 0.76419 1.20847 1.21617 1.21566 1.22099 0.94173 0.92313 1.55379 0.93682 1.19129 0.94179 0.91705 0.96722 1.21463 0.98373 0.91275 1.01154 1.21810 0.93310 0.93369 0.94725 0.88710 1.59051 1.26994 1.44135 1.03432 1.22385 0.81743 0.85374 0.80831 1.90639 1.60970 1.54072 1.36073 1.48434 1.44013 1.33297 1.08069 1.22510 1.02429 0.95763 0.81990 1.22834 0.97525 0.97947 0.98518 1.22642 0.99803 1.02512 0.91185 1.21464 0.88609 0.93423 0.95783 0.88469 1.20951 0.85557 0.83203 0.81548 1.43812 1.17767 1.26966 1.53910 1.90825 1.81470 1.27591 1.38503 0.91971 0.97935 0.95633 0.92688 0.92687 0.83685 0.85518 0.90468 0.89504 0.90110 0.89156 0.89206 0.89982 0.77451 0.76867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.92 13.65 55.43 0.76 -28.17 16 2 C 0.01 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 26.36 29.90 -169.99 -5.08 21.28 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.60 -17.95 9.11 -34.44 -0.31 -18.26 16 8 H 0.04 1.34 7.74 -52.49 -0.41 0.94 16 9 C 0.02 0.53 4.17 -27.88 -0.12 0.41 16 10 C -0.08 -1.90 4.76 -26.73 -0.13 -2.03 16 11 C 0.08 1.55 2.56 -68.87 -0.18 1.37 16 12 H 0.10 1.61 6.92 -51.92 -0.36 1.25 16 13 N -0.81 -14.71 8.44 -5.66 -0.05 -14.76 16 14 C 0.51 9.18 6.25 -10.98 -0.07 9.11 16 15 O -0.54 -11.27 15.53 -8.35 -0.13 -11.40 16 16 N -0.60 -8.67 2.84 -164.18 -0.47 -9.14 16 17 C 0.10 1.10 6.23 -2.41 -0.01 1.09 16 18 C -0.13 -0.94 7.10 -24.46 -0.17 -1.11 16 19 C -0.12 -0.85 6.40 -24.90 -0.16 -1.01 16 20 C 0.12 1.31 3.26 -68.10 -0.22 1.08 16 21 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 22 C 0.51 6.87 6.93 -10.98 -0.08 6.79 16 23 N -0.86 -7.12 8.81 31.22 0.28 -6.84 16 24 O -0.51 -10.09 15.90 -8.35 -0.13 -10.22 16 25 H 0.27 8.51 7.22 -40.82 -0.29 8.22 16 26 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 27 H 0.03 0.72 7.62 -51.93 -0.40 0.33 16 28 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.05 1.21 7.39 -51.93 -0.38 0.83 16 30 H 0.35 6.62 8.58 -39.29 -0.34 6.28 16 31 H 0.33 5.19 9.06 -39.29 -0.36 4.83 16 32 H 0.08 0.98 7.86 -51.93 -0.41 0.58 16 33 H 0.09 0.96 6.92 -51.93 -0.36 0.61 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.58 7.84 -51.93 -0.41 0.18 16 38 H 0.40 1.73 8.82 -40.82 -0.36 1.37 16 39 H 0.40 3.12 8.93 -40.82 -0.36 2.75 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -39.36 322.25 -7.27 -46.63 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.76 Total: 9.96 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.55 Total: -2.20 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.52 Total: -58.91 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.26 Total: -21.61 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.08 Total: 21.28 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -39.36 -7.27 -46.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.474 kcal (2) G-P(sol) polarization free energy of solvation -39.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds