Wall clock time and date at job start Mon Mar 30 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46902 * 304.99868 * 11 10 9 13 13 N 1.46897 * 109.47378 * 64.99832 * 11 10 9 14 14 C 1.50700 * 109.47090 * 184.99901 * 11 10 9 15 15 O 1.21282 * 120.00167 * 259.99698 * 14 11 10 16 16 N 1.34779 * 119.99988 * 80.00415 * 14 11 10 17 17 C 1.47429 * 125.64923 * 359.68089 * 16 14 11 18 18 C 1.55133 * 104.72063 * 155.82422 * 17 16 14 19 19 C 1.55155 * 101.48460 * 37.29949 * 18 17 16 20 20 C 1.47024 * 125.65111 * 180.02562 * 16 14 11 21 21 H 1.09003 * 109.87456 * 300.43368 * 20 16 14 22 22 C 1.50703 * 109.88272 * 61.59341 * 20 16 14 23 23 N 1.34778 * 119.99786 * 180.02562 * 22 20 16 24 24 O 1.21281 * 120.00155 * 0.02562 * 22 20 16 25 25 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 27 27 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 28 28 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 29 29 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 30 30 H 1.00896 * 111.00078 * 60.00144 * 13 11 10 31 31 H 1.00899 * 111.00098 * 183.95517 * 13 11 10 32 32 H 1.08996 * 110.36897 * 274.75804 * 17 16 14 33 33 H 1.09001 * 110.36296 * 37.08012 * 17 16 14 34 34 H 1.08994 * 111.18923 * 279.19497 * 18 17 16 35 35 H 1.08999 * 110.93475 * 155.29629 * 18 17 16 36 36 H 1.09001 * 110.71435 * 205.96718 * 19 18 17 37 37 H 1.08991 * 110.87278 * 82.76607 * 19 18 17 38 38 H 0.97005 * 119.99669 * 0.02562 * 23 22 20 39 39 H 0.96999 * 120.00017 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 1 0.7874 -5.0069 0.8423 13 7 0.7301 -5.1187 -1.2548 14 6 2.4550 -6.1297 0.1263 15 8 2.7880 -6.7534 -0.8592 16 7 2.9566 -6.4586 1.3332 17 6 2.6442 -5.7840 2.6064 18 6 2.9263 -6.8504 3.6972 19 6 4.1772 -7.5619 3.1174 20 6 3.9113 -7.5450 1.5974 21 1 3.4839 -8.4980 1.2853 22 6 5.1973 -7.2891 0.8546 23 7 6.2179 -8.1638 0.9531 24 8 5.3139 -6.2960 0.1682 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6248 -2.5571 -0.8896 28 1 2.8727 -3.6046 -0.8877 29 1 2.8714 -3.6038 0.8922 30 1 1.3508 -5.1031 -2.0501 31 1 0.1658 -5.9551 -1.2529 32 1 3.2897 -4.9167 2.7445 33 1 1.5961 -5.4855 2.6303 34 1 2.0918 -7.5448 3.7944 35 1 3.1529 -6.3789 4.6534 36 1 4.2441 -8.5855 3.4861 37 1 5.0848 -7.0075 3.3559 38 1 6.1245 -8.9583 1.5018 39 1 7.0458 -7.9990 0.4753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691601590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:03 Heat of formation + Delta-G solvation = -118.270352 kcal Electronic energy + Delta-G solvation = -21423.736429 eV Core-core repulsion = 18171.052340 eV Total energy + Delta-G solvation = -3252.684089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86012 -40.11495 -38.31545 -37.02168 -35.08772 -34.83574 -32.64777 -31.81544 -30.55890 -27.91074 -25.89307 -24.65426 -23.01384 -22.50965 -21.58579 -20.24829 -19.05684 -18.52873 -18.42576 -17.87666 -17.11158 -16.90398 -16.23989 -15.81012 -15.62774 -15.52978 -15.27041 -14.81411 -14.61681 -14.35695 -14.15978 -13.87212 -13.57548 -13.26109 -12.84998 -12.66101 -12.48406 -12.12983 -12.05903 -11.92782 -11.89059 -11.78275 -11.32685 -11.13443 -10.72723 -10.63892 -10.49930 -9.82109 -9.78757 -8.65054 -6.34263 1.36902 1.52050 1.55950 1.60941 1.80877 1.85788 2.55311 2.58793 3.19707 3.30465 3.46722 3.50673 3.71137 3.86243 3.93648 4.08529 4.15213 4.16499 4.46093 4.57416 4.66901 4.72985 4.80661 4.86324 4.99174 5.04464 5.20136 5.26619 5.38938 5.57939 5.82395 5.91899 6.03829 6.22648 6.28750 6.38665 6.41418 6.63621 6.98884 7.31455 7.46222 8.76161 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.004716 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.369303 B = 5936.222326 C = 6089.171372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.035 4.035 3 Si 1.115 2.885 4 H -0.278 1.278 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.624 4.624 8 H 0.039 0.961 9 C 0.029 3.971 10 C -0.067 4.067 11 C 0.091 3.909 12 H 0.112 0.888 13 N -0.816 5.816 14 C 0.506 3.494 15 O -0.575 6.575 16 N -0.602 5.602 17 C 0.080 3.920 18 C -0.116 4.116 19 C -0.111 4.111 20 C 0.106 3.894 21 H 0.114 0.886 22 C 0.497 3.503 23 N -0.832 5.832 24 O -0.585 6.585 25 H 0.257 0.743 26 H -0.004 1.004 27 H 0.003 0.997 28 H 0.027 0.973 29 H 0.055 0.945 30 H 0.343 0.657 31 H 0.349 0.651 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.420 0.580 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.042 -22.046 12.166 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.232 4.232 3 Si 0.936 3.064 4 H -0.204 1.204 5 H -0.192 1.192 6 H -0.202 1.202 7 C -0.662 4.662 8 H 0.057 0.943 9 C -0.008 4.008 10 C -0.106 4.106 11 C -0.025 4.025 12 H 0.130 0.870 13 N -0.345 5.345 14 C 0.293 3.707 15 O -0.455 6.455 16 N -0.335 5.335 17 C -0.042 4.042 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.001 4.001 21 H 0.132 0.868 22 C 0.281 3.719 23 N -0.397 5.397 24 O -0.464 6.464 25 H 0.067 0.933 26 H 0.014 0.986 27 H 0.022 0.978 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.252 0.748 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 8.508 -19.368 11.393 24.028 hybrid contribution 1.059 -2.652 -0.704 2.941 sum 9.567 -22.021 10.689 26.281 Atomic orbital electron populations 1.70894 1.07708 1.29978 1.48568 1.27344 0.96659 1.06475 0.92743 0.82970 0.74176 0.71388 0.77823 1.20359 1.19248 1.20177 1.22500 0.94201 0.94018 1.55450 0.94304 1.18956 0.94312 0.92435 0.95131 1.21142 0.97278 0.92339 0.99809 1.21566 0.93580 0.91802 0.95503 0.87011 1.59015 1.27092 1.45309 1.03088 1.21987 0.81821 0.85099 0.81747 1.90609 1.62130 1.55269 1.37486 1.48443 1.43564 1.33778 1.07729 1.22792 1.02107 0.96896 0.82397 1.22855 0.98280 0.96716 0.97498 1.22752 0.99499 1.05258 0.87339 1.21892 0.86809 0.92724 0.98707 0.86796 1.21463 0.87012 0.82702 0.80755 1.43583 1.16645 1.26535 1.52933 1.90802 1.82916 1.30814 1.41863 0.93324 0.98610 0.97846 0.95395 0.92594 0.84390 0.83743 0.92308 0.89445 0.88200 0.86954 0.84634 0.90081 0.74758 0.76360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.87 13.65 21.45 0.29 -59.58 16 2 C -0.03 -2.09 5.46 84.65 0.46 -1.63 16 3 Si 1.12 52.79 29.90 68.60 2.05 54.84 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.62 -38.09 9.11 25.60 0.23 -37.86 16 8 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 9 C 0.03 1.59 4.17 29.85 0.12 1.72 16 10 C -0.07 -3.15 4.76 30.59 0.15 -3.01 16 11 C 0.09 3.46 2.56 44.17 0.11 3.57 16 12 H 0.11 3.81 6.92 -2.38 -0.02 3.80 16 13 N -0.82 -30.62 8.44 -171.81 -1.45 -32.07 16 14 C 0.51 18.54 6.25 87.66 0.55 19.08 16 15 O -0.58 -24.53 15.53 10.26 0.16 -24.37 16 16 N -0.60 -16.90 2.84 -791.72 -2.25 -19.14 16 17 C 0.08 1.74 6.23 86.93 0.54 2.28 16 18 C -0.12 -1.21 7.10 32.06 0.23 -0.99 16 19 C -0.11 -1.06 6.40 31.78 0.20 -0.86 16 20 C 0.11 2.17 3.26 44.59 0.15 2.31 16 21 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 22 C 0.50 13.07 6.93 87.66 0.61 13.68 16 23 N -0.83 -12.05 8.81 -173.53 -1.53 -13.58 16 24 O -0.59 -23.74 15.90 10.27 0.16 -23.58 16 25 H 0.26 16.69 7.22 -92.70 -0.67 16.02 16 26 H 0.00 -0.25 8.01 -2.39 -0.02 -0.27 16 27 H 0.00 0.19 7.62 -2.39 -0.02 0.17 16 28 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 2.57 7.39 -2.39 -0.02 2.55 16 30 H 0.34 13.62 8.58 -89.70 -0.77 12.85 16 31 H 0.35 10.99 9.06 -89.69 -0.81 10.18 16 32 H 0.06 1.49 7.86 -2.39 -0.02 1.48 16 33 H 0.09 1.85 6.92 -2.39 -0.02 1.84 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 36 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.08 0.85 7.84 -2.39 -0.02 0.83 16 38 H 0.42 2.19 8.82 -92.70 -0.82 1.37 16 39 H 0.41 5.68 8.93 -92.71 -0.83 4.86 16 Total: -1.00 -89.81 322.25 -1.23 -91.04 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -2.02 Total: 28.14 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 3.35 Total: -1.70 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -4.93 Total: -124.36 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: 0.32 Total: -47.95 kcal Atomic # 14 Polarization: 52.79 SS G_CDS: 2.05 Total: 54.84 kcal Total: -89.81 -1.23 -91.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.233 kcal (2) G-P(sol) polarization free energy of solvation -89.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds