Wall clock time and date at job start Mon Mar 30 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48499 * 109.47182 * 270.00253 * 3 2 1 5 5 H 1.48502 * 109.47359 * 29.99978 * 3 2 1 6 6 H 1.48494 * 109.47256 * 149.99995 * 3 2 1 7 7 C 1.37874 * 120.00620 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00729 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.46807 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46818 * 55.00224 * 11 10 9 13 13 N 1.46895 * 109.47097 * 294.99892 * 11 10 9 14 14 C 1.50707 * 109.46553 * 174.99890 * 11 10 9 15 15 O 1.21283 * 119.99546 * 100.00488 * 14 11 10 16 16 N 1.34773 * 120.00180 * 279.99665 * 14 11 10 17 17 C 1.46495 * 120.00178 * 180.02562 * 16 14 11 18 18 H 1.09002 * 109.60091 * 35.00027 * 17 16 14 19 19 C 1.53345 * 109.60356 * 155.32479 * 17 16 14 20 20 C 1.53396 * 108.25104 * 187.27354 * 19 17 16 21 21 C 1.50173 * 109.98641 * 311.23426 * 20 19 17 22 22 O 1.21281 * 118.24057 * 197.51609 * 21 20 19 23 23 N 1.33349 * 123.51142 * 17.54663 * 21 20 19 24 24 C 1.45751 * 124.10657 * 357.79202 * 23 21 20 25 25 H 0.97003 * 120.00146 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46995 * 59.99433 * 9 7 2 27 27 H 1.09007 * 109.47059 * 299.99945 * 9 7 2 28 28 H 1.08991 * 109.47271 * 60.00195 * 10 9 7 29 29 H 1.09002 * 109.47393 * 299.99266 * 10 9 7 30 30 H 1.00898 * 111.00047 * 176.04759 * 13 11 10 31 31 H 1.00906 * 111.00019 * 299.99888 * 13 11 10 32 32 H 0.97007 * 120.00109 * 0.02562 * 16 14 11 33 33 H 1.08993 * 109.67842 * 307.18525 * 19 17 16 34 34 H 1.08998 * 109.67194 * 67.71860 * 19 17 16 35 35 H 1.08998 * 109.38318 * 191.04871 * 20 19 17 36 36 H 1.09005 * 109.24834 * 71.33179 * 20 19 17 37 37 H 0.96996 * 117.94770 * 177.78272 * 23 21 20 38 38 H 1.09000 * 109.30664 * 258.75077 * 24 23 21 39 39 H 1.09005 * 109.13603 * 139.26179 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6619 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 1 0.7881 -5.0065 -0.8449 13 7 0.7292 -5.1192 1.2521 14 6 2.4552 -6.1297 -0.1282 15 8 2.7873 -6.7538 0.8573 16 7 2.9576 -6.4580 -1.3349 17 6 3.9047 -7.5690 -1.4563 18 1 3.6449 -8.3507 -0.7425 19 6 3.8536 -8.1352 -2.8805 20 6 4.7146 -9.4041 -2.9242 21 6 6.0542 -9.1371 -2.3003 22 8 6.9599 -9.9093 -2.5333 23 7 6.3010 -8.0969 -1.5033 24 6 5.3220 -7.0681 -1.1754 25 1 -0.4850 0.8401 0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6242 -2.5575 0.8881 28 1 2.8721 -3.6050 0.8872 29 1 2.8721 -3.6035 -0.8927 30 1 0.1648 -5.9556 1.2494 31 1 1.3493 -5.1040 2.0479 32 1 2.6922 -5.9586 -2.1230 33 1 2.8236 -8.3765 -3.1429 34 1 4.2490 -7.4005 -3.5819 35 1 4.8526 -9.7120 -3.9606 36 1 4.2109 -10.1992 -2.3744 37 1 7.1876 -8.0202 -1.1174 38 1 5.5164 -6.1807 -1.7778 39 1 5.4113 -6.8134 -0.1193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691601618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:20 Heat of formation + Delta-G solvation = -93.911234 kcal Electronic energy + Delta-G solvation = -20523.559766 eV Core-core repulsion = 17271.931968 eV Total energy + Delta-G solvation = -3251.627798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80608 -39.71264 -37.09744 -35.26190 -34.33923 -32.87253 -32.79216 -30.17559 -29.09414 -26.39893 -25.00807 -23.85537 -22.53895 -20.78654 -20.05773 -19.58539 -17.71491 -17.23157 -16.55136 -16.39747 -16.15663 -15.56417 -15.38192 -14.81425 -14.48501 -14.36919 -14.14251 -13.99741 -13.66828 -13.51146 -12.55859 -12.38413 -12.19141 -12.08235 -11.80459 -11.61539 -11.41092 -10.93583 -10.75509 -10.61158 -10.24563 -10.11516 -9.87476 -9.48000 -9.44221 -9.27830 -9.05264 -8.42936 -8.27465 -5.98442 -4.00959 2.33074 2.57002 2.80031 3.17100 3.31146 3.38221 3.41073 4.16752 4.22988 4.34674 4.45867 4.50229 4.76136 4.85098 4.92946 5.04171 5.19413 5.31745 5.34460 5.37153 5.43464 5.53601 5.67746 5.73563 6.19853 6.34756 6.42497 6.56190 6.99716 7.00988 7.24711 7.45476 7.69965 7.71843 7.88294 7.90310 8.07470 8.14104 8.42817 9.07038 9.62615 11.12363 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.003563 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.811952 B = 7856.619382 C = 8431.574936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.807 5.807 14 C 0.485 3.515 15 O -0.550 6.550 16 N -0.724 5.724 17 C 0.130 3.870 18 H 0.096 0.904 19 C -0.133 4.133 20 C -0.131 4.131 21 C 0.517 3.483 22 O -0.561 6.561 23 N -0.714 5.714 24 C 0.096 3.904 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.334 0.666 31 H 0.348 0.652 32 H 0.407 0.593 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.402 0.598 38 H 0.073 0.927 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 -16.105 -5.887 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.271 3.729 15 O -0.427 6.427 16 N -0.377 5.377 17 C 0.023 3.977 18 H 0.114 0.886 19 C -0.171 4.171 20 C -0.171 4.171 21 C 0.305 3.695 22 O -0.440 6.440 23 N -0.366 5.366 24 C -0.030 4.030 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.242 0.758 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.847 -16.144 -5.568 18.051 hybrid contribution 1.235 0.456 -0.074 1.319 sum 7.083 -15.688 -5.642 18.114 Atomic orbital electron populations 1.69968 1.05957 1.26477 1.50711 1.24988 0.94805 0.99076 0.95430 0.86653 0.79892 0.83771 0.78003 1.20767 1.21246 1.19979 1.21266 0.92877 0.91313 1.50758 0.92994 1.19018 0.93553 0.89806 0.98241 1.21667 0.98881 0.92130 1.00676 1.21872 0.93497 0.93109 0.95227 0.88268 1.58986 1.26886 1.44330 1.03244 1.22918 0.81937 0.85627 0.82409 1.90663 1.61121 1.53852 1.37045 1.46125 1.45997 1.34731 1.10863 1.21084 0.88206 0.90395 0.97983 0.88641 1.22040 1.01720 0.97305 0.96039 1.21640 0.92593 0.99279 1.03590 1.20204 0.90811 0.80277 0.78248 1.90770 1.45678 1.46056 1.61474 1.45403 1.16349 1.25566 1.49304 1.21863 0.88229 0.90467 1.02433 0.93056 0.96861 0.94651 0.92824 0.92780 0.85384 0.83770 0.75763 0.89372 0.90174 0.87469 0.87859 0.76251 0.90831 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.03 0.75 4.86 -27.88 -0.14 0.62 16 10 C -0.10 -1.76 4.78 -26.73 -0.13 -1.88 16 11 C 0.08 1.17 3.15 -68.86 -0.22 0.96 16 12 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 13 N -0.81 -12.48 8.44 -5.65 -0.05 -12.53 16 14 C 0.49 6.44 7.04 -10.98 -0.08 6.36 16 15 O -0.55 -8.83 15.92 5.56 0.09 -8.74 16 16 N -0.72 -6.96 5.09 -53.67 -0.27 -7.23 16 17 C 0.13 1.11 2.51 -67.79 -0.17 0.94 16 18 H 0.10 0.98 7.57 -51.93 -0.39 0.59 16 19 C -0.13 -0.81 5.55 -26.35 -0.15 -0.96 16 20 C -0.13 -0.92 6.03 -27.93 -0.17 -1.09 16 21 C 0.52 5.42 7.72 -11.87 -0.09 5.33 16 22 O -0.56 -8.16 17.78 5.56 0.10 -8.06 16 23 N -0.71 -6.50 5.45 -61.39 -0.33 -6.83 16 24 C 0.10 0.84 6.75 -4.48 -0.03 0.81 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.94 7.75 -51.93 -0.40 0.54 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.33 4.44 9.06 -39.29 -0.36 4.08 16 31 H 0.35 5.50 8.58 -39.29 -0.34 5.16 16 32 H 0.41 3.14 8.61 -40.82 -0.35 2.79 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.40 3.41 8.80 -40.82 -0.36 3.05 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -33.91 327.61 -7.36 -41.26 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.97 Total: 8.51 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.58 Total: -1.98 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.08 Total: -52.13 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.19 Total: -16.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.91 -7.36 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.648 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds