Wall clock time and date at job start Mon Mar 30 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48499 * 109.47182 * 270.00253 * 3 2 1 5 5 H 1.48502 * 109.47359 * 29.99978 * 3 2 1 6 6 H 1.48494 * 109.47256 * 149.99995 * 3 2 1 7 7 C 1.37874 * 120.00620 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00729 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.46807 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46818 * 55.00224 * 11 10 9 13 13 N 1.46895 * 109.47097 * 294.99892 * 11 10 9 14 14 C 1.50707 * 109.46553 * 174.99890 * 11 10 9 15 15 O 1.21283 * 119.99546 * 100.00488 * 14 11 10 16 16 N 1.34773 * 120.00180 * 279.99665 * 14 11 10 17 17 C 1.46495 * 120.00178 * 180.02562 * 16 14 11 18 18 H 1.09002 * 109.60091 * 35.00027 * 17 16 14 19 19 C 1.53345 * 109.60356 * 155.32479 * 17 16 14 20 20 C 1.53396 * 108.25104 * 187.27354 * 19 17 16 21 21 C 1.50173 * 109.98641 * 311.23426 * 20 19 17 22 22 O 1.21281 * 118.24057 * 197.51609 * 21 20 19 23 23 N 1.33349 * 123.51142 * 17.54663 * 21 20 19 24 24 C 1.45751 * 124.10657 * 357.79202 * 23 21 20 25 25 H 0.97003 * 120.00146 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46995 * 59.99433 * 9 7 2 27 27 H 1.09007 * 109.47059 * 299.99945 * 9 7 2 28 28 H 1.08991 * 109.47271 * 60.00195 * 10 9 7 29 29 H 1.09002 * 109.47393 * 299.99266 * 10 9 7 30 30 H 1.00898 * 111.00047 * 176.04759 * 13 11 10 31 31 H 1.00906 * 111.00019 * 299.99888 * 13 11 10 32 32 H 0.97007 * 120.00109 * 0.02562 * 16 14 11 33 33 H 1.08993 * 109.67842 * 307.18525 * 19 17 16 34 34 H 1.08998 * 109.67194 * 67.71860 * 19 17 16 35 35 H 1.08998 * 109.38318 * 191.04871 * 20 19 17 36 36 H 1.09005 * 109.24834 * 71.33179 * 20 19 17 37 37 H 0.96996 * 117.94770 * 177.78272 * 23 21 20 38 38 H 1.09000 * 109.30664 * 258.75077 * 24 23 21 39 39 H 1.09005 * 109.13603 * 139.26179 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6619 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 1 0.7881 -5.0065 -0.8449 13 7 0.7292 -5.1192 1.2521 14 6 2.4552 -6.1297 -0.1282 15 8 2.7873 -6.7538 0.8573 16 7 2.9576 -6.4580 -1.3349 17 6 3.9047 -7.5690 -1.4563 18 1 3.6449 -8.3507 -0.7425 19 6 3.8536 -8.1352 -2.8805 20 6 4.7146 -9.4041 -2.9242 21 6 6.0542 -9.1371 -2.3003 22 8 6.9599 -9.9093 -2.5333 23 7 6.3010 -8.0969 -1.5033 24 6 5.3220 -7.0681 -1.1754 25 1 -0.4850 0.8401 0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6242 -2.5575 0.8881 28 1 2.8721 -3.6050 0.8872 29 1 2.8721 -3.6035 -0.8927 30 1 0.1648 -5.9556 1.2494 31 1 1.3493 -5.1040 2.0479 32 1 2.6922 -5.9586 -2.1230 33 1 2.8236 -8.3765 -3.1429 34 1 4.2490 -7.4005 -3.5819 35 1 4.8526 -9.7120 -3.9606 36 1 4.2109 -10.1992 -2.3744 37 1 7.1876 -8.0202 -1.1174 38 1 5.5164 -6.1807 -1.7778 39 1 5.4113 -6.8134 -0.1193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691601618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:20 Heat of formation + Delta-G solvation = -122.279605 kcal Electronic energy + Delta-G solvation = -20524.789911 eV Core-core repulsion = 17271.931968 eV Total energy + Delta-G solvation = -3252.857943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64858 -40.72614 -38.00093 -36.69412 -35.21703 -34.77537 -33.48739 -31.88404 -29.96879 -27.95701 -25.88826 -25.16646 -23.47436 -22.26709 -21.18723 -20.40288 -18.60077 -18.52271 -17.97926 -17.37509 -17.17947 -16.81389 -16.48920 -16.21621 -15.73233 -15.22604 -15.05609 -14.96857 -14.79811 -14.42199 -14.24808 -13.78223 -13.41230 -13.17670 -12.92508 -12.77785 -12.52134 -12.46346 -12.22373 -11.97292 -11.71440 -11.60896 -11.21465 -10.96102 -10.94865 -10.46309 -10.33362 -10.11976 -9.57656 -8.11549 -6.21223 1.43454 1.44819 1.49594 1.54276 1.55466 1.95663 2.37958 2.46684 3.21989 3.53589 3.55830 3.61506 3.67830 3.86102 3.98574 4.17137 4.24007 4.37554 4.38748 4.53089 4.69121 4.82164 4.84088 4.98524 4.99812 5.09471 5.31148 5.36122 5.60910 5.68018 5.89485 6.02972 6.15259 6.24002 6.33566 6.47127 6.57781 6.98639 7.09397 7.16026 7.47060 8.99486 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.003563 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.811952 B = 7856.619382 C = 8431.574936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.082 4.082 11 C 0.085 3.915 12 H 0.114 0.886 13 N -0.822 5.822 14 C 0.493 3.507 15 O -0.578 6.578 16 N -0.705 5.705 17 C 0.130 3.870 18 H 0.081 0.919 19 C -0.121 4.121 20 C -0.126 4.126 21 C 0.512 3.488 22 O -0.608 6.608 23 N -0.709 5.709 24 C 0.099 3.901 25 H 0.261 0.739 26 H -0.004 1.004 27 H 0.004 0.996 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.347 0.653 31 H 0.345 0.655 32 H 0.420 0.580 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.403 0.597 38 H 0.086 0.914 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 -16.200 -7.247 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.120 4.120 11 C -0.031 4.031 12 H 0.132 0.868 13 N -0.351 5.351 14 C 0.279 3.721 15 O -0.457 6.457 16 N -0.358 5.358 17 C 0.024 3.976 18 H 0.099 0.901 19 C -0.159 4.159 20 C -0.165 4.165 21 C 0.301 3.699 22 O -0.491 6.491 23 N -0.359 5.359 24 C -0.026 4.026 25 H 0.070 0.930 26 H 0.014 0.986 27 H 0.022 0.978 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.258 0.742 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.238 0.762 38 H 0.104 0.896 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.364 -16.230 -6.961 18.772 hybrid contribution 1.067 0.480 0.368 1.227 sum 7.431 -15.751 -6.592 18.622 Atomic orbital electron populations 1.70098 1.07600 1.27422 1.51916 1.25873 0.95650 1.02938 0.95148 0.85579 0.78644 0.79162 0.78424 1.19676 1.21238 1.19123 1.21758 0.93402 0.92761 1.50049 0.92515 1.18840 0.93971 0.91380 0.95768 1.21394 0.97673 0.91957 1.00994 1.21667 0.93819 0.92036 0.95550 0.86840 1.58965 1.27328 1.45366 1.03419 1.22379 0.81609 0.85063 0.83070 1.90664 1.61974 1.54785 1.38305 1.45918 1.45130 1.34628 1.10112 1.21149 0.87472 0.89475 0.99542 0.90079 1.22006 1.02822 0.96895 0.94180 1.21674 0.90609 1.00063 1.04200 1.20857 0.91629 0.79618 0.77832 1.90750 1.47425 1.47624 1.63263 1.45421 1.16518 1.25320 1.48661 1.21834 0.88332 0.90684 1.01780 0.93015 0.98604 0.97804 0.94000 0.90891 0.84004 0.84190 0.74198 0.87333 0.88851 0.86029 0.86851 0.76162 0.89605 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 2 C 0.00 0.09 5.46 84.65 0.46 0.56 16 3 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.04 1.84 4.86 29.85 0.15 1.99 16 10 C -0.08 -2.95 4.78 30.60 0.15 -2.80 16 11 C 0.09 2.42 3.15 44.18 0.14 2.56 16 12 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 13 N -0.82 -25.18 8.44 -171.79 -1.45 -26.63 16 14 C 0.49 12.23 7.04 87.66 0.62 12.85 16 15 O -0.58 -17.94 15.92 -3.04 -0.05 -17.99 16 16 N -0.71 -11.61 5.09 -442.11 -2.25 -13.86 16 17 C 0.13 1.91 2.51 45.08 0.11 2.02 16 18 H 0.08 1.51 7.57 -2.39 -0.02 1.49 16 19 C -0.12 -1.05 5.55 30.84 0.17 -0.88 16 20 C -0.13 -1.45 6.03 29.82 0.18 -1.27 16 21 C 0.51 10.09 7.72 87.71 0.68 10.76 16 22 O -0.61 -17.51 17.78 -3.03 -0.05 -17.56 16 23 N -0.71 -12.10 5.45 -467.32 -2.55 -14.64 16 24 C 0.10 1.57 6.75 86.50 0.58 2.16 16 25 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.00 0.19 7.75 -2.38 -0.02 0.18 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.35 8.98 9.06 -89.70 -0.81 8.16 16 31 H 0.34 10.94 8.58 -89.69 -0.77 10.17 16 32 H 0.42 4.96 8.61 -92.70 -0.80 4.17 16 33 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.64 8.13 -2.39 -0.02 0.62 16 35 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.40 6.64 8.80 -92.71 -0.82 5.82 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -73.95 327.61 -2.67 -76.62 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -2.10 Total: 25.21 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 3.47 Total: -1.31 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -5.96 Total: -110.22 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.10 Total: -35.56 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -73.95 -2.67 -76.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.661 kcal (2) G-P(sol) polarization free energy of solvation -73.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds