Wall clock time and date at job start Mon Mar 30 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47199 * 305.00346 * 11 10 9 13 13 N 1.46898 * 109.46690 * 65.00106 * 11 10 9 14 14 C 1.50696 * 109.47146 * 184.99852 * 11 10 9 15 15 O 1.21279 * 120.00286 * 260.00076 * 14 11 10 16 16 N 1.34781 * 119.99816 * 80.00269 * 14 11 10 17 17 C 1.46501 * 120.00182 * 179.97438 * 16 14 11 18 18 H 1.09001 * 109.59956 * 324.67935 * 17 16 14 19 19 C 1.53343 * 109.60605 * 204.18733 * 17 16 14 20 20 C 1.53053 * 108.43734 * 172.72642 * 19 17 16 21 21 C 1.50179 * 109.89534 * 48.88910 * 20 19 17 22 22 O 1.21278 * 118.24702 * 162.43759 * 21 20 19 23 23 N 1.33355 * 123.50569 * 342.41536 * 21 20 19 24 24 C 1.45751 * 124.10714 * 2.24503 * 23 21 20 25 25 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 26 26 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 27 27 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 28 28 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 29 29 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 30 30 H 1.00900 * 111.00688 * 296.04355 * 13 11 10 31 31 H 1.00898 * 111.00196 * 60.00491 * 13 11 10 32 32 H 0.97002 * 119.99995 * 359.97438 * 16 14 11 33 33 H 1.08998 * 109.67128 * 292.44969 * 19 17 16 34 34 H 1.09002 * 109.67112 * 52.97517 * 19 17 16 35 35 H 1.09005 * 109.40206 * 288.75622 * 20 19 17 36 36 H 1.09004 * 109.33123 * 168.97488 * 20 19 17 37 37 H 0.96998 * 117.94395 * 182.22603 * 23 21 20 38 38 H 1.09007 * 109.30052 * 220.59394 * 24 23 21 39 39 H 1.08993 * 109.30569 * 101.21626 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 1 0.7884 -5.0031 0.8651 13 7 0.7282 -5.1243 -1.2313 14 6 2.4549 -6.1292 0.1519 15 8 2.7864 -6.7574 -0.8312 16 7 2.9582 -6.4527 1.3596 17 6 3.9052 -7.5633 1.4850 18 1 3.6414 -8.3503 0.7785 19 6 3.8639 -8.1158 2.9149 20 6 4.7212 -9.3826 2.9693 21 6 6.0583 -9.1223 2.3371 22 8 6.9652 -9.8916 2.5751 23 7 6.3017 -8.0908 1.5278 24 6 5.3214 -7.0654 1.1932 25 1 -0.4850 0.8401 -0.0041 26 1 0.6241 -2.5528 0.9015 27 1 0.6247 -2.5609 -0.8785 28 1 2.8719 -3.6083 -0.8736 29 1 2.8719 -3.6004 0.9064 30 1 0.0233 -4.4067 -1.3108 31 1 1.3477 -5.1123 -2.0276 32 1 2.6933 -5.9500 2.1459 33 1 4.2621 -7.3736 3.6067 34 1 2.8359 -8.3563 3.1858 35 1 4.2162 -10.1849 2.4312 36 1 4.8634 -9.6776 4.0089 37 1 7.1867 -8.0182 1.1375 38 1 5.4055 -6.8183 0.1349 39 1 5.5182 -6.1718 1.7854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691601622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:23 Heat of formation + Delta-G solvation = -94.928277 kcal Electronic energy + Delta-G solvation = -20529.809651 eV Core-core repulsion = 17278.137751 eV Total energy + Delta-G solvation = -3251.671901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74661 -39.58514 -37.04034 -35.50471 -34.25682 -32.92241 -32.75799 -29.96501 -29.09410 -26.48214 -24.96037 -23.98972 -22.56779 -20.83483 -20.04662 -19.53891 -17.66639 -17.41487 -16.43361 -16.37437 -16.20592 -15.34526 -14.85036 -14.84052 -14.52485 -14.23397 -14.12577 -14.07869 -13.63236 -13.23914 -13.03062 -12.46633 -12.25375 -12.10672 -11.78073 -11.73110 -11.35382 -11.16330 -11.00016 -10.71863 -10.08060 -10.06206 -10.01549 -9.43880 -9.36969 -9.27321 -9.20264 -8.50045 -8.27609 -6.14334 -4.17680 2.37112 2.72632 2.83310 3.20309 3.22092 3.30542 3.33779 4.22021 4.27912 4.34043 4.40485 4.55411 4.86263 4.93315 5.04648 5.10362 5.22112 5.24375 5.36560 5.39470 5.48492 5.58796 5.66735 5.74147 6.19020 6.28680 6.42585 6.46457 6.79142 7.03789 7.31289 7.44724 7.52151 7.57903 7.81884 7.83204 7.92192 8.24279 8.29810 8.88559 9.47724 10.96516 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.003562 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.400069 B = 7858.600569 C = 8428.270295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.098 0.902 13 N -0.831 5.831 14 C 0.527 3.473 15 O -0.534 6.534 16 N -0.728 5.728 17 C 0.133 3.867 18 H 0.097 0.903 19 C -0.133 4.133 20 C -0.131 4.131 21 C 0.518 3.482 22 O -0.561 6.561 23 N -0.714 5.714 24 C 0.095 3.905 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.355 0.645 31 H 0.346 0.654 32 H 0.406 0.594 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.402 0.598 38 H 0.085 0.915 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -14.016 5.875 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.116 0.884 13 N -0.363 5.363 14 C 0.315 3.685 15 O -0.409 6.409 16 N -0.382 5.382 17 C 0.027 3.973 18 H 0.115 0.885 19 C -0.171 4.171 20 C -0.171 4.171 21 C 0.305 3.695 22 O -0.440 6.440 23 N -0.366 5.366 24 C -0.031 4.031 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.171 0.829 31 H 0.159 0.841 32 H 0.241 0.759 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.237 0.763 38 H 0.104 0.896 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.955 -15.477 5.647 17.519 hybrid contribution 0.996 2.422 -0.030 2.619 sum 6.951 -13.055 5.617 15.821 Atomic orbital electron populations 1.69956 1.06023 1.26735 1.50402 1.25018 0.94871 0.99344 0.95084 0.86532 0.80087 0.83676 0.77701 1.19761 1.20929 1.20920 1.21206 0.93039 0.90871 1.51155 0.92669 1.19107 0.93719 0.91110 0.97404 1.22388 0.99897 0.93924 1.01489 1.21482 0.94658 0.92106 0.95785 0.88425 1.58741 1.18457 1.55941 1.03195 1.21009 0.80825 0.84376 0.82327 1.90650 1.60238 1.52780 1.37228 1.45940 1.46501 1.35058 1.10665 1.21042 0.87975 0.90346 0.97900 0.88463 1.21977 1.01813 0.97345 0.95992 1.21585 0.92637 0.99355 1.03500 1.20218 0.90796 0.80194 0.78324 1.90766 1.45541 1.45947 1.61795 1.45396 1.16447 1.26213 1.48535 1.21871 0.88289 0.90510 1.02416 0.92891 0.96290 0.96387 0.92655 0.92506 0.82923 0.84118 0.75935 0.90220 0.89338 0.87775 0.87505 0.76285 0.89650 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -13.84 9.11 -34.44 -0.31 -14.16 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.02 0.54 4.74 -27.89 -0.13 0.41 16 10 C -0.14 -2.45 4.78 -26.73 -0.13 -2.58 16 11 C 0.07 1.14 3.21 -68.87 -0.22 0.92 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 13 N -0.83 -13.24 8.93 -5.66 -0.05 -13.29 16 14 C 0.53 7.50 7.05 -10.99 -0.08 7.42 16 15 O -0.53 -9.22 15.92 5.56 0.09 -9.14 16 16 N -0.73 -7.39 5.09 -53.67 -0.27 -7.66 16 17 C 0.13 1.20 2.52 -67.79 -0.17 1.03 16 18 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 19 C -0.13 -0.86 5.51 -26.53 -0.15 -1.00 16 20 C -0.13 -0.95 6.03 -28.11 -0.17 -1.12 16 21 C 0.52 5.52 7.71 -11.87 -0.09 5.43 16 22 O -0.56 -8.26 17.78 5.56 0.10 -8.16 16 23 N -0.71 -6.62 5.45 -61.39 -0.33 -6.95 16 24 C 0.09 0.86 6.75 -4.48 -0.03 0.82 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.36 5.73 7.55 -39.29 -0.30 5.44 16 31 H 0.35 5.61 8.58 -39.29 -0.34 5.27 16 32 H 0.41 3.28 8.60 -40.82 -0.35 2.93 16 33 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 3.46 8.80 -40.82 -0.36 3.10 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -32.76 325.63 -7.29 -40.05 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.86 Total: 10.49 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.58 Total: -1.34 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.08 Total: -52.50 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.19 Total: -17.29 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.76 -7.29 -40.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.876 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds