Wall clock time and date at job start Mon Mar 30 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47199 * 305.00346 * 11 10 9 13 13 N 1.46898 * 109.46690 * 65.00106 * 11 10 9 14 14 C 1.50696 * 109.47146 * 184.99852 * 11 10 9 15 15 O 1.21279 * 120.00286 * 260.00076 * 14 11 10 16 16 N 1.34781 * 119.99816 * 80.00269 * 14 11 10 17 17 C 1.46501 * 120.00182 * 179.97438 * 16 14 11 18 18 H 1.09001 * 109.59956 * 324.67935 * 17 16 14 19 19 C 1.53343 * 109.60605 * 204.18733 * 17 16 14 20 20 C 1.53053 * 108.43734 * 172.72642 * 19 17 16 21 21 C 1.50179 * 109.89534 * 48.88910 * 20 19 17 22 22 O 1.21278 * 118.24702 * 162.43759 * 21 20 19 23 23 N 1.33355 * 123.50569 * 342.41536 * 21 20 19 24 24 C 1.45751 * 124.10714 * 2.24503 * 23 21 20 25 25 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 26 26 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 27 27 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 28 28 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 29 29 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 30 30 H 1.00900 * 111.00688 * 296.04355 * 13 11 10 31 31 H 1.00898 * 111.00196 * 60.00491 * 13 11 10 32 32 H 0.97002 * 119.99995 * 359.97438 * 16 14 11 33 33 H 1.08998 * 109.67128 * 292.44969 * 19 17 16 34 34 H 1.09002 * 109.67112 * 52.97517 * 19 17 16 35 35 H 1.09005 * 109.40206 * 288.75622 * 20 19 17 36 36 H 1.09004 * 109.33123 * 168.97488 * 20 19 17 37 37 H 0.96998 * 117.94395 * 182.22603 * 23 21 20 38 38 H 1.09007 * 109.30052 * 220.59394 * 24 23 21 39 39 H 1.08993 * 109.30569 * 101.21626 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 1 0.7884 -5.0031 0.8651 13 7 0.7282 -5.1243 -1.2313 14 6 2.4549 -6.1292 0.1519 15 8 2.7864 -6.7574 -0.8312 16 7 2.9582 -6.4527 1.3596 17 6 3.9052 -7.5633 1.4850 18 1 3.6414 -8.3503 0.7785 19 6 3.8639 -8.1158 2.9149 20 6 4.7212 -9.3826 2.9693 21 6 6.0583 -9.1223 2.3371 22 8 6.9652 -9.8916 2.5751 23 7 6.3017 -8.0908 1.5278 24 6 5.3214 -7.0654 1.1932 25 1 -0.4850 0.8401 -0.0041 26 1 0.6241 -2.5528 0.9015 27 1 0.6247 -2.5609 -0.8785 28 1 2.8719 -3.6083 -0.8736 29 1 2.8719 -3.6004 0.9064 30 1 0.0233 -4.4067 -1.3108 31 1 1.3477 -5.1123 -2.0276 32 1 2.6933 -5.9500 2.1459 33 1 4.2621 -7.3736 3.6067 34 1 2.8359 -8.3563 3.1858 35 1 4.2162 -10.1849 2.4312 36 1 4.8634 -9.6776 4.0089 37 1 7.1867 -8.0182 1.1375 38 1 5.4055 -6.8183 0.1349 39 1 5.5182 -6.1718 1.7854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691601622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:22 Heat of formation + Delta-G solvation = -122.032390 kcal Electronic energy + Delta-G solvation = -20530.984974 eV Core-core repulsion = 17278.137751 eV Total energy + Delta-G solvation = -3252.847223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60758 -40.65021 -37.99330 -36.92321 -35.17064 -34.80499 -33.47966 -31.64585 -29.99730 -27.95947 -25.94151 -25.26863 -23.48643 -22.31625 -21.16168 -20.37142 -18.81667 -18.49256 -18.04351 -17.27004 -17.15949 -16.53337 -16.22111 -15.94658 -15.85292 -15.36930 -15.07281 -14.98364 -14.58825 -14.55987 -14.39773 -13.93548 -13.42745 -13.15360 -12.95006 -12.88918 -12.65280 -12.50124 -12.44517 -11.94206 -11.76440 -11.68648 -11.25665 -10.92216 -10.73230 -10.54489 -10.29100 -10.08799 -9.60482 -8.19993 -6.29632 1.39666 1.42032 1.52753 1.55191 1.61768 1.93373 2.38189 2.41899 3.14273 3.56019 3.60832 3.64255 3.79550 3.86240 3.99860 4.18592 4.26295 4.30958 4.40925 4.55994 4.70756 4.72961 4.84716 4.89134 5.01913 5.11751 5.14585 5.39948 5.50484 5.69934 5.70435 5.84067 6.11636 6.23761 6.26135 6.50404 6.55118 6.87050 7.11721 7.24871 7.39675 8.90795 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.003562 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.400069 B = 7858.600569 C = 8428.270295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.121 4.121 11 C 0.080 3.920 12 H 0.113 0.887 13 N -0.832 5.832 14 C 0.531 3.469 15 O -0.567 6.567 16 N -0.708 5.708 17 C 0.132 3.868 18 H 0.081 0.919 19 C -0.122 4.122 20 C -0.125 4.125 21 C 0.512 3.488 22 O -0.608 6.608 23 N -0.708 5.708 24 C 0.099 3.901 25 H 0.263 0.737 26 H 0.004 0.996 27 H 0.000 1.000 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.352 0.648 31 H 0.343 0.657 32 H 0.420 0.580 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.403 0.597 38 H 0.071 0.929 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -14.010 7.208 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.131 0.869 13 N -0.364 5.364 14 C 0.318 3.682 15 O -0.445 6.445 16 N -0.361 5.361 17 C 0.027 3.973 18 H 0.099 0.901 19 C -0.159 4.159 20 C -0.165 4.165 21 C 0.301 3.699 22 O -0.491 6.491 23 N -0.359 5.359 24 C -0.027 4.027 25 H 0.072 0.928 26 H 0.022 0.978 27 H 0.019 0.981 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.257 0.743 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.238 0.762 38 H 0.089 0.911 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.353 -15.458 7.011 18.123 hybrid contribution 0.872 2.413 -0.461 2.607 sum 7.225 -13.044 6.550 16.287 Atomic orbital electron populations 1.70064 1.07454 1.27610 1.51568 1.25845 0.95687 1.02897 0.94915 0.85528 0.79117 0.79513 0.77666 1.18906 1.20826 1.20402 1.21671 0.93398 0.92465 1.50449 0.92602 1.18984 0.94127 0.92057 0.95740 1.22131 0.98727 0.93556 1.01619 1.21439 0.94859 0.91253 0.95986 0.86948 1.58766 1.18433 1.55639 1.03525 1.20719 0.80573 0.83897 0.83040 1.90647 1.61322 1.53892 1.38631 1.45739 1.45619 1.34950 1.09827 1.21121 0.87343 0.89368 0.99497 0.90073 1.21943 1.02889 0.97031 0.94067 1.21621 0.90674 1.00086 1.04136 1.20860 0.91586 0.79537 0.77937 1.90746 1.47268 1.47510 1.63555 1.45410 1.16616 1.25952 1.47898 1.21833 0.88274 0.90762 1.01798 0.92818 0.97797 0.98131 0.93777 0.91030 0.83305 0.84403 0.74282 0.88766 0.87399 0.86837 0.85990 0.76155 0.91092 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.86 13.29 21.45 0.28 -52.57 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -28.41 9.11 25.60 0.23 -28.18 16 8 H 0.06 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.03 1.29 4.74 29.85 0.14 1.43 16 10 C -0.12 -4.19 4.78 30.59 0.15 -4.04 16 11 C 0.08 2.32 3.21 44.17 0.14 2.46 16 12 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 13 N -0.83 -26.19 8.93 -171.81 -1.54 -27.72 16 14 C 0.53 14.22 7.05 87.66 0.62 14.84 16 15 O -0.57 -19.11 15.92 -3.03 -0.05 -19.16 16 16 N -0.71 -12.53 5.09 -442.10 -2.25 -14.78 16 17 C 0.13 2.08 2.52 45.08 0.11 2.19 16 18 H 0.08 1.62 7.58 -2.39 -0.02 1.60 16 19 C -0.12 -1.14 5.51 30.73 0.17 -0.97 16 20 C -0.13 -1.51 6.03 29.70 0.18 -1.33 16 21 C 0.51 10.30 7.71 87.71 0.68 10.97 16 22 O -0.61 -17.71 17.78 -3.02 -0.05 -17.76 16 23 N -0.71 -12.35 5.45 -467.31 -2.55 -14.90 16 24 C 0.10 1.61 6.75 86.50 0.58 2.20 16 25 H 0.26 14.19 8.31 -92.71 -0.77 13.41 16 26 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.00 0.02 6.87 -2.39 -0.02 0.00 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.35 11.41 7.55 -89.69 -0.68 10.73 16 31 H 0.34 11.12 8.58 -89.70 -0.77 10.35 16 32 H 0.42 5.31 8.60 -92.71 -0.80 4.52 16 33 H 0.09 0.68 8.13 -2.39 -0.02 0.66 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 1.20 8.14 -2.38 -0.02 1.19 16 36 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.40 6.74 8.80 -92.71 -0.82 5.93 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.62 325.63 -2.62 -73.24 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -1.96 Total: 29.25 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 3.46 Total: 0.30 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -6.05 Total: -109.97 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.10 Total: -36.92 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -70.62 -2.62 -73.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.789 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds