Wall clock time and date at job start Mon Mar 30 2020 05:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99880 * 2 1 4 4 H 1.48498 * 109.46757 * 270.00188 * 3 2 1 5 5 H 1.48498 * 109.47220 * 30.00096 * 3 2 1 6 6 H 1.48502 * 109.46679 * 150.00151 * 3 2 1 7 7 C 1.37879 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99805 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46774 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46867 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47398 * 54.99853 * 11 10 9 13 13 N 1.46901 * 109.46769 * 294.99558 * 11 10 9 14 14 C 1.50699 * 109.47083 * 174.99799 * 11 10 9 15 15 O 1.21287 * 119.99919 * 99.99446 * 14 11 10 16 16 N 1.34772 * 120.00370 * 279.99712 * 14 11 10 17 17 C 1.46500 * 120.00265 * 179.97438 * 16 14 11 18 18 C 1.52999 * 109.46975 * 180.02562 * 17 16 14 19 19 H 1.09005 * 110.21649 * 296.93217 * 18 17 16 20 20 C 1.54479 * 110.24556 * 174.99911 * 18 17 16 21 21 C 1.54630 * 101.76691 * 215.58051 * 20 18 17 22 22 C 1.51286 * 104.19508 * 24.80262 * 21 20 18 23 23 O 1.21276 * 124.94682 * 163.74473 * 22 21 20 24 24 N 1.34425 * 110.11322 * 343.74422 * 22 21 20 25 25 H 0.97002 * 120.00052 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46866 * 60.00334 * 9 7 2 27 27 H 1.09001 * 109.47348 * 300.00254 * 9 7 2 28 28 H 1.08990 * 109.47398 * 60.00357 * 10 9 7 29 29 H 1.09001 * 109.47099 * 300.00050 * 10 9 7 30 30 H 1.00898 * 111.00245 * 300.00105 * 13 11 10 31 31 H 1.00904 * 111.00313 * 63.95922 * 13 11 10 32 32 H 0.97003 * 119.99538 * 0.02562 * 16 14 11 33 33 H 1.08998 * 109.47114 * 299.99947 * 17 16 14 34 34 H 1.08999 * 109.47199 * 60.00203 * 17 16 14 35 35 H 1.08997 * 110.97083 * 333.70264 * 20 18 17 36 36 H 1.09003 * 110.96816 * 97.47037 * 20 18 17 37 37 H 1.09000 * 110.48357 * 143.47281 * 21 20 18 38 38 H 1.08994 * 110.49209 * 266.12348 * 21 20 18 39 39 H 0.96996 * 124.34850 * 179.57842 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 1 5.9149 -2.0471 0.8419 13 7 6.0411 -2.0514 -1.2552 14 6 6.0538 -4.0520 0.1241 15 8 6.4279 -4.6513 -0.8618 16 7 6.0874 -4.6519 1.3305 17 6 6.5752 -6.0281 1.4509 18 6 6.5086 -6.4664 2.9153 19 1 7.1683 -5.8479 3.5240 20 6 6.9001 -7.9550 3.0460 21 6 5.9647 -8.4285 4.1826 22 6 4.7990 -7.4657 4.1290 23 8 3.7230 -7.6474 4.6583 24 7 5.1292 -6.3795 3.4092 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8746 -0.6808 -0.8905 28 1 3.6579 -3.1506 -0.8896 29 1 3.6585 -3.1502 0.8903 30 1 5.7176 -2.5804 -2.0512 31 1 5.7718 -1.0820 -1.3316 32 1 5.7879 -4.1727 2.1189 33 1 5.9537 -6.6881 0.8458 34 1 7.6067 -6.0797 1.1024 35 1 6.6951 -8.4950 2.1216 36 1 7.9465 -8.0594 3.3331 37 1 5.6262 -9.4480 3.9982 38 1 6.4705 -8.3617 5.1458 39 1 4.5325 -5.6342 3.2380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691603764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:30 Heat of formation + Delta-G solvation = -87.901151 kcal Electronic energy + Delta-G solvation = -20413.318800 eV Core-core repulsion = 17161.951618 eV Total energy + Delta-G solvation = -3251.367182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77586 -39.63357 -37.16355 -35.71165 -34.45901 -32.83648 -31.66234 -30.36939 -29.81268 -26.94639 -24.87169 -23.25413 -21.87143 -20.98430 -20.46035 -19.90897 -17.83873 -17.38660 -16.97760 -16.66676 -16.11927 -15.36257 -14.89818 -14.76000 -14.36648 -14.21593 -14.07503 -13.80679 -13.51604 -13.10156 -13.01403 -12.96855 -12.69948 -12.42902 -12.00154 -11.87141 -11.49786 -11.39027 -11.02381 -10.41589 -10.16205 -10.13202 -9.90533 -9.52260 -9.46891 -9.34761 -9.21618 -8.64679 -8.39448 -6.13830 -4.13918 2.34156 2.74325 2.88092 3.14277 3.22904 3.31201 3.31948 3.95694 3.99459 4.24369 4.35157 4.61282 4.63070 4.86511 4.91207 4.98120 5.18724 5.21002 5.25007 5.37552 5.41947 5.47137 5.52911 5.62523 6.06453 6.23936 6.27024 6.49203 6.59926 6.72316 7.03544 7.16747 7.22194 7.46598 7.62966 7.71728 7.97214 8.26564 8.41764 8.89989 9.46988 10.99352 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.004082 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.317490 B = 6857.200604 C = 7935.396570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.130 4.130 11 C 0.071 3.929 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.528 3.472 15 O -0.533 6.533 16 N -0.738 5.738 17 C 0.112 3.888 18 C 0.119 3.881 19 H 0.091 0.909 20 C -0.125 4.125 21 C -0.156 4.156 22 C 0.518 3.482 23 O -0.531 6.531 24 N -0.728 5.728 25 H 0.264 0.736 26 H 0.018 0.982 27 H 0.011 0.989 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.348 0.652 31 H 0.351 0.649 32 H 0.400 0.600 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.765 -12.906 7.084 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.169 4.169 11 C -0.044 4.044 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.408 6.408 16 N -0.392 5.392 17 C -0.012 4.012 18 C 0.013 3.987 19 H 0.109 0.891 20 C -0.164 4.164 21 C -0.196 4.196 22 C 0.304 3.696 23 O -0.407 6.407 24 N -0.385 5.385 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.234 0.766 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 18.125 -13.585 6.933 23.688 hybrid contribution -1.119 1.686 0.072 2.025 sum 17.006 -11.898 7.006 21.905 Atomic orbital electron populations 1.69915 1.06351 1.27049 1.50487 1.25051 0.94757 0.99238 0.94383 0.86763 0.80278 0.83548 0.78572 1.20206 1.21302 1.19002 1.21059 0.89198 0.94558 1.51531 0.91076 1.19570 0.97601 0.91264 0.96310 1.22207 0.91160 1.01213 1.02356 1.21520 0.95700 0.91536 0.95623 0.88498 1.58737 1.66696 1.07486 1.03352 1.20813 0.76608 0.88774 0.82369 1.90656 1.47051 1.66154 1.36978 1.45955 1.67946 1.14987 1.10305 1.21697 1.01114 0.83605 0.94814 1.21987 0.83707 0.98306 0.94688 0.89074 1.22642 1.00774 0.93289 0.99667 1.22356 0.95690 1.00527 1.01023 1.20900 0.88523 0.82902 0.77229 1.90792 1.25547 1.77343 1.47047 1.46397 1.15145 1.22665 1.54329 0.92589 0.96348 0.97034 0.92016 0.91967 0.83811 0.83412 0.76561 0.90737 0.89938 0.89284 0.88602 0.87810 0.87631 0.74736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.53 -14.45 9.66 -34.44 -0.33 -14.78 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 10 C -0.13 -2.34 4.78 -26.73 -0.13 -2.46 16 11 C 0.07 1.07 3.21 -68.86 -0.22 0.85 16 12 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 13 N -0.83 -12.75 8.94 -5.65 -0.05 -12.80 16 14 C 0.53 7.64 7.08 -10.99 -0.08 7.56 16 15 O -0.53 -9.44 16.25 5.55 0.09 -9.34 16 16 N -0.74 -7.62 5.34 -60.30 -0.32 -7.94 16 17 C 0.11 0.93 5.31 -4.04 -0.02 0.91 16 18 C 0.12 0.70 3.62 -67.01 -0.24 0.46 16 19 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 20 C -0.13 -0.53 6.69 -25.10 -0.17 -0.70 16 21 C -0.16 -0.93 6.86 -26.74 -0.18 -1.11 16 22 C 0.52 5.50 8.43 -10.86 -0.09 5.41 16 23 O -0.53 -8.34 18.03 5.56 0.10 -8.24 16 24 N -0.73 -6.28 5.73 -52.76 -0.30 -6.58 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 27 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.35 5.50 8.58 -39.29 -0.34 5.16 16 31 H 0.35 5.23 7.55 -39.29 -0.30 4.93 16 32 H 0.40 3.38 7.89 -40.82 -0.32 3.06 16 33 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.37 7.88 -51.93 -0.41 -0.04 16 36 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.41 3.80 8.31 -40.82 -0.34 3.47 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -35.56 324.61 -6.95 -42.51 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.79 Total: 10.19 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.67 Total: -2.38 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.10 Total: -53.87 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.19 Total: -17.59 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.56 -6.95 -42.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691603764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.388 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds