Wall clock time and date at job start Mon Mar 30 2020 05:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99880 * 2 1 4 4 H 1.48498 * 109.46757 * 270.00188 * 3 2 1 5 5 H 1.48498 * 109.47220 * 30.00096 * 3 2 1 6 6 H 1.48502 * 109.46679 * 150.00151 * 3 2 1 7 7 C 1.37879 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99805 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46774 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46867 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47398 * 54.99853 * 11 10 9 13 13 N 1.46901 * 109.46769 * 294.99558 * 11 10 9 14 14 C 1.50699 * 109.47083 * 174.99799 * 11 10 9 15 15 O 1.21287 * 119.99919 * 99.99446 * 14 11 10 16 16 N 1.34772 * 120.00370 * 279.99712 * 14 11 10 17 17 C 1.46500 * 120.00265 * 179.97438 * 16 14 11 18 18 C 1.52999 * 109.46975 * 180.02562 * 17 16 14 19 19 H 1.09005 * 110.21649 * 296.93217 * 18 17 16 20 20 C 1.54479 * 110.24556 * 174.99911 * 18 17 16 21 21 C 1.54630 * 101.76691 * 215.58051 * 20 18 17 22 22 C 1.51286 * 104.19508 * 24.80262 * 21 20 18 23 23 O 1.21276 * 124.94682 * 163.74473 * 22 21 20 24 24 N 1.34425 * 110.11322 * 343.74422 * 22 21 20 25 25 H 0.97002 * 120.00052 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46866 * 60.00334 * 9 7 2 27 27 H 1.09001 * 109.47348 * 300.00254 * 9 7 2 28 28 H 1.08990 * 109.47398 * 60.00357 * 10 9 7 29 29 H 1.09001 * 109.47099 * 300.00050 * 10 9 7 30 30 H 1.00898 * 111.00245 * 300.00105 * 13 11 10 31 31 H 1.00904 * 111.00313 * 63.95922 * 13 11 10 32 32 H 0.97003 * 119.99538 * 0.02562 * 16 14 11 33 33 H 1.08998 * 109.47114 * 299.99947 * 17 16 14 34 34 H 1.08999 * 109.47199 * 60.00203 * 17 16 14 35 35 H 1.08997 * 110.97083 * 333.70264 * 20 18 17 36 36 H 1.09003 * 110.96816 * 97.47037 * 20 18 17 37 37 H 1.09000 * 110.48357 * 143.47281 * 21 20 18 38 38 H 1.08994 * 110.49209 * 266.12348 * 21 20 18 39 39 H 0.96996 * 124.34850 * 179.57842 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 1 5.9149 -2.0471 0.8419 13 7 6.0411 -2.0514 -1.2552 14 6 6.0538 -4.0520 0.1241 15 8 6.4279 -4.6513 -0.8618 16 7 6.0874 -4.6519 1.3305 17 6 6.5752 -6.0281 1.4509 18 6 6.5086 -6.4664 2.9153 19 1 7.1683 -5.8479 3.5240 20 6 6.9001 -7.9550 3.0460 21 6 5.9647 -8.4285 4.1826 22 6 4.7990 -7.4657 4.1290 23 8 3.7230 -7.6474 4.6583 24 7 5.1292 -6.3795 3.4092 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8746 -0.6808 -0.8905 28 1 3.6579 -3.1506 -0.8896 29 1 3.6585 -3.1502 0.8903 30 1 5.7176 -2.5804 -2.0512 31 1 5.7718 -1.0820 -1.3316 32 1 5.7879 -4.1727 2.1189 33 1 5.9537 -6.6881 0.8458 34 1 7.6067 -6.0797 1.1024 35 1 6.6951 -8.4950 2.1216 36 1 7.9465 -8.0594 3.3331 37 1 5.6262 -9.4480 3.9982 38 1 6.4705 -8.3617 5.1458 39 1 4.5325 -5.6342 3.2380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691603764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:30 Heat of formation + Delta-G solvation = -119.191699 kcal Electronic energy + Delta-G solvation = -20414.675660 eV Core-core repulsion = 17161.951618 eV Total energy + Delta-G solvation = -3252.724042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52547 -40.71616 -38.04712 -37.11296 -35.41251 -34.81983 -32.21380 -32.08764 -30.62396 -28.34580 -26.04727 -24.42846 -22.46444 -22.24849 -21.51190 -21.00160 -19.19265 -18.53179 -18.08878 -17.73416 -17.04651 -16.37827 -16.22860 -15.94266 -15.77766 -15.55956 -15.06121 -14.80782 -14.64385 -14.44225 -14.19079 -13.81722 -13.59248 -13.42509 -13.23436 -13.02507 -12.69364 -12.43588 -12.08614 -11.94965 -11.92887 -11.67846 -11.42570 -10.97025 -10.81217 -10.77244 -10.19771 -10.15250 -9.66176 -8.31318 -6.37452 1.37489 1.39165 1.50528 1.55261 1.59938 2.03791 2.35079 2.41022 3.04404 3.40948 3.45609 3.72569 3.77758 3.80970 4.08401 4.16487 4.18397 4.21264 4.42512 4.54959 4.63470 4.71980 4.85742 4.89191 4.93293 5.10616 5.20552 5.34017 5.37514 5.45796 5.61297 5.79780 5.98168 6.05450 6.23146 6.45918 6.49219 6.71677 7.18445 7.21044 7.27680 8.85653 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.004082 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.317490 B = 6857.200604 C = 7935.396570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.234 1.234 7 C -0.537 4.537 8 H 0.023 0.977 9 C -0.006 4.006 10 C -0.119 4.119 11 C 0.079 3.921 12 H 0.122 0.878 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.569 6.569 16 N -0.722 5.722 17 C 0.111 3.889 18 C 0.124 3.876 19 H 0.119 0.881 20 C -0.115 4.115 21 C -0.147 4.147 22 C 0.504 3.496 23 O -0.596 6.596 24 N -0.728 5.728 25 H 0.266 0.734 26 H 0.033 0.967 27 H 0.024 0.976 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.344 0.656 31 H 0.354 0.646 32 H 0.411 0.589 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.447 -12.353 7.929 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.157 1.157 7 C -0.575 4.575 8 H 0.042 0.958 9 C -0.043 4.043 10 C -0.159 4.159 11 C -0.036 4.036 12 H 0.140 0.860 13 N -0.361 5.361 14 C 0.312 3.688 15 O -0.447 6.447 16 N -0.376 5.376 17 C -0.013 4.013 18 C 0.019 3.981 19 H 0.137 0.863 20 C -0.153 4.153 21 C -0.186 4.186 22 C 0.292 3.708 23 O -0.477 6.477 24 N -0.382 5.382 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.247 0.753 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 21.868 -13.044 7.796 26.629 hybrid contribution -2.327 1.435 -0.204 2.742 sum 19.541 -11.609 7.592 23.963 Atomic orbital electron populations 1.70095 1.08659 1.28269 1.52459 1.26127 0.95625 1.03934 0.93917 0.85575 0.79767 0.77528 0.79246 1.19249 1.21507 1.15735 1.21461 0.92375 0.92812 1.50815 0.95828 1.19500 0.93616 0.93918 0.97291 1.22028 0.93815 0.98648 1.01443 1.21466 0.92982 0.92700 0.96436 0.86048 1.58766 1.66393 1.07661 1.03329 1.20698 0.76557 0.88495 0.83018 1.90646 1.48992 1.66741 1.38361 1.45861 1.66487 1.15748 1.09458 1.21847 1.01263 0.81856 0.96286 1.22209 0.82441 1.00235 0.93205 0.86289 1.22726 1.02202 0.91377 0.99017 1.22395 0.93988 0.99370 1.02896 1.21792 0.88807 0.83864 0.76296 1.90749 1.28381 1.78751 1.49818 1.46596 1.16259 1.21928 1.53461 0.92532 0.94843 0.95788 0.94217 0.91835 0.84263 0.83053 0.75253 0.92451 0.88657 0.89237 0.85114 0.87336 0.85491 0.75541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 2 C 0.00 0.03 5.47 84.65 0.46 0.49 16 3 Si 0.96 42.32 27.47 68.60 1.88 44.20 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.23 -9.14 6.54 99.48 0.65 -8.49 16 7 C -0.54 -30.09 9.66 25.60 0.25 -29.84 16 8 H 0.02 1.49 7.99 -2.91 -0.02 1.46 16 9 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 10 C -0.12 -4.22 4.78 30.60 0.15 -4.08 16 11 C 0.08 2.21 3.21 44.17 0.14 2.35 16 12 H 0.12 2.81 8.14 -2.39 -0.02 2.80 16 13 N -0.83 -23.79 8.94 -171.80 -1.54 -25.32 16 14 C 0.53 14.34 7.08 87.66 0.62 14.96 16 15 O -0.57 -19.53 16.25 -3.05 -0.05 -19.58 16 16 N -0.72 -13.34 5.34 -463.07 -2.47 -15.81 16 17 C 0.11 1.58 5.31 86.38 0.46 2.04 16 18 C 0.12 1.07 3.62 45.44 0.16 1.24 16 19 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 20 C -0.12 -0.54 6.69 31.65 0.21 -0.33 16 21 C -0.15 -1.39 6.86 30.59 0.21 -1.18 16 22 C 0.50 10.46 8.43 87.90 0.74 11.20 16 23 O -0.60 -19.46 18.03 -3.02 -0.05 -19.51 16 24 N -0.73 -11.70 5.73 -439.42 -2.52 -14.22 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.75 16 26 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 27 H 0.02 0.96 6.30 -2.39 -0.02 0.95 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.34 10.51 8.58 -89.70 -0.77 9.74 16 31 H 0.35 9.61 7.55 -89.69 -0.68 8.93 16 32 H 0.41 5.88 7.89 -92.71 -0.73 5.15 16 33 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 0.47 7.88 -2.39 -0.02 0.45 16 36 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.41 7.31 8.31 -92.71 -0.77 6.54 16 Total: -1.00 -81.48 324.61 -2.83 -84.31 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -1.90 Total: 28.66 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 3.52 Total: -3.29 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -6.23 Total: -114.80 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.10 Total: -39.09 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Total: -81.48 -2.83 -84.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691603764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.878 kcal (2) G-P(sol) polarization free energy of solvation -81.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds