Wall clock time and date at job start Mon Mar 30 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00557 * 2 1 4 4 H 1.48500 * 109.46965 * 270.00490 * 3 2 1 5 5 H 1.48496 * 109.46949 * 30.00047 * 3 2 1 6 6 H 1.48495 * 109.47404 * 150.00368 * 3 2 1 7 7 C 1.37878 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00499 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99618 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47167 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47307 * 304.99895 * 11 10 9 13 13 N 1.46896 * 109.47465 * 65.00178 * 11 10 9 14 14 C 1.50706 * 109.47066 * 185.00455 * 11 10 9 15 15 O 1.21283 * 119.99503 * 259.99830 * 14 11 10 16 16 N 1.34773 * 120.00081 * 79.72557 * 14 11 10 17 17 C 1.47067 * 136.05728 * 359.62604 * 16 14 11 18 18 C 1.53246 * 88.08081 * 207.20610 * 17 16 14 19 19 C 1.52996 * 114.32424 * 220.46822 * 18 17 16 20 20 C 1.50695 * 109.47322 * 268.76242 * 19 18 17 21 21 N 1.34784 * 119.99915 * 180.02562 * 20 19 18 22 22 O 1.21284 * 120.00284 * 359.97438 * 20 19 18 23 23 C 1.47065 * 136.05555 * 180.02562 * 16 14 11 24 24 H 0.97003 * 119.99297 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47188 * 60.00827 * 9 7 2 26 26 H 1.08995 * 109.47391 * 300.00362 * 9 7 2 27 27 H 1.09003 * 109.46940 * 60.00361 * 10 9 7 28 28 H 1.08995 * 109.47266 * 300.00402 * 10 9 7 29 29 H 1.00905 * 110.99814 * 296.04826 * 13 11 10 30 30 H 1.00900 * 110.99773 * 59.99397 * 13 11 10 31 31 H 1.08994 * 113.46972 * 321.93725 * 17 16 14 32 32 H 1.08998 * 113.46779 * 92.38418 * 17 16 14 33 33 H 1.09000 * 114.19360 * 87.73161 * 18 17 16 34 34 H 1.09000 * 109.47441 * 28.76256 * 19 18 17 35 35 H 1.09005 * 109.46919 * 148.76158 * 19 18 17 36 36 H 0.96996 * 120.00206 * 359.97438 * 21 20 19 37 37 H 0.96997 * 119.99652 * 179.97438 * 21 20 19 38 38 H 1.09008 * 113.46635 * 267.62210 * 23 16 14 39 39 H 1.08998 * 113.47009 * 38.05795 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 1 0.7875 -5.0073 0.8404 13 7 0.7287 -5.1182 -1.2567 14 6 2.4545 -6.1300 0.1228 15 8 2.7866 -6.7532 -0.8632 16 7 2.9611 -6.4558 1.3284 17 6 2.8237 -5.9565 2.7048 18 6 4.2333 -6.4891 2.9839 19 6 4.3960 -7.1549 4.3518 20 6 4.8397 -6.1276 5.3610 21 7 5.0488 -6.4884 6.6427 22 8 5.0096 -4.9762 5.0198 23 6 3.9001 -7.4628 1.8454 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5570 0.8896 27 1 2.8717 -3.6045 0.8895 28 1 2.8717 -3.6045 -0.8904 29 1 0.0239 -4.4000 -1.3330 30 1 1.3488 -5.1022 -2.0524 31 1 2.7513 -4.8708 2.7675 32 1 2.0467 -6.4650 3.2756 33 1 5.0314 -5.7846 2.7500 34 1 3.4431 -7.5824 4.6635 35 1 5.1440 -7.9450 4.2846 36 1 4.9133 -7.4093 6.9155 37 1 5.3348 -5.8272 7.2922 38 1 3.4128 -8.3770 2.1846 39 1 4.7408 -7.6551 1.1788 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691610319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:42 Heat of formation + Delta-G solvation = -85.055601 kcal Electronic energy + Delta-G solvation = -20549.642386 eV Core-core repulsion = 17298.398596 eV Total energy + Delta-G solvation = -3251.243789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69369 -40.32178 -39.08505 -37.06384 -34.87309 -34.56620 -32.74429 -31.74326 -29.29716 -27.64578 -26.94518 -25.29976 -22.79873 -22.00264 -20.97415 -19.97598 -18.79511 -18.31870 -18.15627 -17.50437 -17.21108 -16.53839 -16.47666 -16.14410 -15.93231 -15.52072 -15.26035 -14.75924 -14.54286 -14.13960 -14.00539 -13.68730 -13.53918 -13.35088 -12.99543 -12.82298 -12.59436 -12.51608 -12.33930 -11.87276 -11.73935 -11.53956 -11.34689 -10.92071 -10.73358 -10.59144 -10.53998 -9.82111 -9.64565 -8.24556 -6.35180 1.36924 1.37458 1.48596 1.53728 1.77424 1.79296 2.37604 2.69797 3.08676 3.29557 3.46652 3.68929 3.86549 4.00840 4.04116 4.16085 4.19279 4.47828 4.54012 4.56420 4.62125 4.66270 4.76110 4.78457 4.89883 4.93435 5.02401 5.36418 5.41096 5.59325 5.75910 6.00611 6.01891 6.17638 6.42307 6.60757 6.63600 6.78733 7.10022 7.33800 7.49954 8.86425 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.004828 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.490242 B = 5798.610394 C = 7381.775206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.033 3.967 10 C -0.118 4.118 11 C 0.088 3.912 12 H 0.102 0.898 13 N -0.828 5.828 14 C 0.551 3.449 15 O -0.576 6.576 16 N -0.655 5.655 17 C 0.096 3.904 18 C -0.099 4.099 19 C -0.118 4.118 20 C 0.507 3.493 21 N -0.841 5.841 22 O -0.600 6.600 23 C 0.111 3.889 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.000 1.000 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.354 0.646 30 H 0.344 0.656 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.420 0.580 37 H 0.403 0.597 38 H 0.122 0.878 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.164 -19.116 14.976 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.158 4.158 11 C -0.027 4.027 12 H 0.120 0.880 13 N -0.359 5.359 14 C 0.341 3.659 15 O -0.455 6.455 16 N -0.390 5.390 17 C -0.027 4.027 18 C -0.119 4.119 19 C -0.158 4.158 20 C 0.293 3.707 21 N -0.405 5.405 22 O -0.481 6.481 23 C -0.011 4.011 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.018 0.982 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.169 0.831 30 H 0.157 0.843 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.252 0.748 37 H 0.233 0.767 38 H 0.139 0.861 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.908 -19.346 14.133 25.230 hybrid contribution 0.637 2.163 -0.022 2.255 sum 8.545 -17.183 14.111 23.820 Atomic orbital electron populations 1.70056 1.07421 1.27856 1.51133 1.25849 0.95775 1.02913 0.94536 0.85534 0.78648 0.78897 0.78522 1.19740 1.20257 1.19397 1.21582 0.93193 0.92557 1.51256 0.93138 1.18938 0.93873 0.91858 0.95701 1.22095 0.98820 0.94100 1.00807 1.21281 0.94529 0.91208 0.95695 0.87983 1.58767 1.18351 1.55618 1.03170 1.20245 0.80306 0.84077 0.81236 1.90607 1.61891 1.55559 1.37479 1.49578 1.46748 1.36290 1.06357 1.23408 0.98621 1.00947 0.79688 1.22547 0.96742 0.97877 0.94700 1.21594 1.06810 0.97346 0.90050 1.21221 0.75632 0.89231 0.84606 1.43791 1.70938 1.16026 1.09735 1.90817 1.53608 1.23128 1.80503 1.23264 0.91824 0.93321 0.92660 0.92590 0.97612 0.98151 0.92672 0.93836 0.83113 0.84268 0.92200 0.86297 0.89549 0.84677 0.84350 0.74834 0.76700 0.86061 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.80 13.29 21.45 0.28 -55.52 16 2 C 0.01 0.46 5.46 84.66 0.46 0.92 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.75 4.74 29.85 0.14 1.90 16 10 C -0.12 -5.18 4.78 30.59 0.15 -5.03 16 11 C 0.09 3.33 3.03 44.17 0.13 3.47 16 12 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 13 N -0.83 -31.05 8.94 -171.81 -1.54 -32.59 16 14 C 0.55 20.34 7.33 87.66 0.64 20.99 16 15 O -0.58 -24.69 17.03 -3.04 -0.05 -24.74 16 16 N -0.65 -18.48 3.69 -858.80 -3.17 -21.66 16 17 C 0.10 2.13 7.98 83.10 0.66 2.79 16 18 C -0.10 -1.74 3.51 -10.55 -0.04 -1.78 16 19 C -0.12 -0.93 5.62 29.85 0.17 -0.76 16 20 C 0.51 7.76 8.10 87.65 0.71 8.47 16 21 N -0.84 -5.77 8.87 -173.53 -1.54 -7.31 16 22 O -0.60 -17.24 16.57 -3.04 -0.05 -17.29 16 23 C 0.11 2.04 8.20 83.17 0.68 2.72 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.01 0.31 6.87 -2.39 -0.02 0.29 16 26 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.05 2.41 7.65 -2.39 -0.02 2.39 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.35 13.23 7.55 -89.69 -0.68 12.55 16 30 H 0.34 13.11 8.58 -89.69 -0.77 12.34 16 31 H 0.06 1.71 7.64 -2.39 -0.02 1.69 16 32 H 0.12 1.81 7.88 -2.39 -0.02 1.79 16 33 H 0.09 2.09 7.62 -2.39 -0.02 2.08 16 34 H 0.14 0.22 7.81 -2.39 -0.02 0.21 16 35 H 0.14 0.18 8.14 -2.38 -0.02 0.17 16 36 H 0.42 -0.51 8.83 -92.71 -0.82 -1.33 16 37 H 0.40 2.98 8.93 -92.71 -0.83 2.15 16 38 H 0.12 1.36 8.10 -2.38 -0.02 1.34 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -83.24 331.32 -2.08 -85.32 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -1.99 Total: 24.49 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 3.95 Total: 2.05 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -5.96 Total: -117.06 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -0.10 Total: -42.04 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -83.24 -2.08 -85.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691610319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.264 kcal (2) G-P(sol) polarization free energy of solvation -83.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds