Wall clock time and date at job start Mon Mar 30 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 14 14 C 1.50699 * 109.47482 * 174.99860 * 11 10 9 15 15 O 1.21286 * 119.99857 * 100.00182 * 14 11 10 16 16 N 1.34781 * 120.00160 * 279.99980 * 14 11 10 17 17 C 1.47061 * 136.05652 * 359.63441 * 16 14 11 18 18 C 1.53757 * 87.89003 * 152.95839 * 17 16 14 19 19 C 1.52994 * 114.08977 * 139.77909 * 18 17 16 20 20 C 1.50692 * 109.47443 * 91.55924 * 19 18 17 21 21 N 1.34774 * 120.00379 * 179.97438 * 20 19 18 22 22 O 1.21281 * 119.99772 * 0.02562 * 20 19 18 23 23 C 1.47066 * 136.05566 * 179.97438 * 16 14 11 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.00906 * 111.00043 * 176.04212 * 13 11 10 30 30 H 1.00899 * 111.00057 * 299.99390 * 13 11 10 31 31 H 1.09000 * 113.46612 * 267.68921 * 17 16 14 32 32 H 1.09006 * 113.47134 * 38.12654 * 17 16 14 33 33 H 1.08996 * 114.57271 * 272.66505 * 18 17 16 34 34 H 1.09003 * 109.46961 * 211.56543 * 19 18 17 35 35 H 1.09006 * 109.46814 * 331.55704 * 19 18 17 36 36 H 0.97004 * 119.99989 * 0.02562 * 21 20 19 37 37 H 0.97001 * 120.00156 * 179.97438 * 21 20 19 38 38 H 1.09001 * 113.47085 * 321.87148 * 23 16 14 39 39 H 1.09000 * 113.46562 * 92.31304 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7877 -5.0072 -0.8404 13 7 0.7288 -5.1181 1.2567 14 6 2.4546 -6.1299 -0.1227 15 8 2.7868 -6.7532 0.8633 16 7 2.9571 -6.4594 -1.3292 17 6 2.8045 -5.9728 -2.7085 18 6 4.2219 -6.4980 -2.9902 19 6 4.3792 -7.1691 -4.3561 20 6 4.8175 -6.1453 -5.3713 21 7 5.0213 -6.5110 -6.6524 22 8 4.9878 -4.9925 -5.0353 23 6 3.8946 -7.4676 -1.8463 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.1644 -5.9545 1.2547 30 1 1.3489 -5.1022 2.0525 31 1 2.0290 -6.4942 -3.2695 32 1 2.7198 -4.8883 -2.7794 33 1 5.0205 -5.7920 -2.7626 34 1 5.1281 -7.9582 -4.2891 35 1 3.4251 -7.5987 -4.6618 36 1 4.8854 -7.4331 -6.9211 37 1 5.3030 -5.8519 -7.3060 38 1 4.7384 -7.6566 -1.1827 39 1 3.4066 -8.3834 -2.1799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691610320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:45 Heat of formation + Delta-G solvation = -52.310944 kcal Electronic energy + Delta-G solvation = -20535.640897 eV Core-core repulsion = 17285.817023 eV Total energy + Delta-G solvation = -3249.823874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.72237 -39.46597 -38.00838 -35.10714 -33.96123 -32.73408 -31.92330 -30.05284 -28.12430 -26.26343 -25.72503 -23.39826 -21.68897 -20.35157 -20.16361 -18.83808 -17.75929 -17.13201 -16.80138 -16.34414 -15.98552 -15.56666 -15.36605 -15.26576 -14.35501 -14.22385 -13.83226 -13.42731 -13.19797 -12.91028 -12.61706 -12.23391 -12.15946 -11.83586 -11.61465 -11.47428 -10.82368 -10.71167 -10.59691 -10.50862 -10.19030 -10.03658 -9.98692 -9.71887 -9.30740 -8.95140 -8.69562 -8.29945 -8.15111 -5.87637 -3.89322 2.38920 2.78679 2.88188 3.21195 3.41881 3.45276 3.48804 4.05743 4.43632 4.55966 4.58918 4.71277 4.92271 5.00496 5.08324 5.17457 5.21031 5.37320 5.46099 5.47889 5.58821 5.65005 5.85137 5.94191 6.12330 6.46808 6.53790 6.73795 7.00086 7.16107 7.45907 7.78636 7.81735 7.83530 7.99374 8.02222 8.19096 8.30369 8.55263 9.18160 9.73489 11.23361 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.004822 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.580924 B = 5805.135602 C = 7393.205155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.033 3.967 10 C -0.095 4.095 11 C 0.085 3.915 12 H 0.096 0.904 13 N -0.806 5.806 14 C 0.514 3.486 15 O -0.555 6.555 16 N -0.644 5.644 17 C 0.102 3.898 18 C -0.111 4.111 19 C -0.130 4.130 20 C 0.513 3.487 21 N -0.861 5.861 22 O -0.530 6.530 23 C 0.103 3.897 24 H 0.259 0.741 25 H 0.035 0.965 26 H 0.012 0.988 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.333 0.667 30 H 0.348 0.652 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.400 0.600 37 H 0.401 0.599 38 H 0.077 0.923 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.496 -19.556 -13.303 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.133 4.133 11 C -0.031 4.031 12 H 0.114 0.886 13 N -0.334 5.334 14 C 0.303 3.697 15 O -0.433 6.433 16 N -0.380 5.380 17 C -0.021 4.021 18 C -0.130 4.130 19 C -0.171 4.171 20 C 0.298 3.702 21 N -0.425 5.425 22 O -0.405 6.405 23 C -0.021 4.021 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.162 0.838 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.136 0.864 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.228 0.772 37 H 0.232 0.768 38 H 0.095 0.905 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.099 -18.290 -12.297 23.154 hybrid contribution 1.055 -0.293 -0.489 1.199 sum 8.153 -18.582 -12.787 23.985 Atomic orbital electron populations 1.69968 1.05945 1.26450 1.50962 1.24977 0.94795 0.99002 0.95490 0.86715 0.79619 0.83416 0.78568 1.20326 1.21351 1.20323 1.21250 0.92898 0.91314 1.50482 0.93022 1.19004 0.93520 0.89819 0.98106 1.21650 0.98870 0.92041 1.00733 1.21777 0.93297 0.93167 0.94827 0.88599 1.59041 1.26856 1.44168 1.03303 1.22477 0.81228 0.85582 0.80400 1.90647 1.61283 1.55224 1.36146 1.49672 1.46505 1.35254 1.06530 1.23206 0.95884 1.02408 0.80588 1.22864 0.99169 0.98692 0.92317 1.21577 1.03908 0.98005 0.93621 1.20673 0.76505 0.89701 0.83354 1.43922 1.73048 1.14730 1.10805 1.90833 1.50124 1.20087 1.79481 1.22985 0.92916 0.92812 0.93342 0.93104 0.94711 0.96942 0.92720 0.92908 0.85524 0.83804 0.89861 0.88969 0.86408 0.88044 0.88207 0.77218 0.76838 0.90497 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -15.30 9.11 -34.44 -0.31 -15.61 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.87 4.86 -27.88 -0.14 0.73 16 10 C -0.09 -2.06 4.78 -26.74 -0.13 -2.18 16 11 C 0.08 1.56 2.98 -68.87 -0.21 1.35 16 12 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 13 N -0.81 -14.50 8.44 -5.66 -0.05 -14.55 16 14 C 0.51 9.01 7.32 -10.98 -0.08 8.93 16 15 O -0.56 -11.18 17.03 5.55 0.09 -11.08 16 16 N -0.64 -9.08 3.69 -185.05 -0.68 -9.76 16 17 C 0.10 1.17 8.00 -8.37 -0.07 1.11 16 18 C -0.11 -1.06 3.54 -89.98 -0.32 -1.38 16 19 C -0.13 -0.75 5.61 -27.89 -0.16 -0.91 16 20 C 0.51 4.39 8.10 -10.99 -0.09 4.30 16 21 N -0.86 -4.05 8.87 31.22 0.28 -3.77 16 22 O -0.53 -7.53 16.57 5.56 0.09 -7.44 16 23 C 0.10 1.05 8.19 -8.51 -0.07 0.98 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.03 1.00 7.75 -51.93 -0.40 0.59 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 1.16 7.73 -51.93 -0.40 0.76 16 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.33 5.18 9.06 -39.29 -0.36 4.83 16 30 H 0.35 6.32 8.58 -39.29 -0.34 5.99 16 31 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 32 H 0.09 1.26 7.73 -51.93 -0.40 0.86 16 33 H 0.12 1.40 7.62 -51.93 -0.40 1.00 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.36 7.80 -51.93 -0.40 -0.05 16 36 H 0.40 0.50 8.83 -40.82 -0.36 0.14 16 37 H 0.40 1.84 8.93 -40.82 -0.36 1.47 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 333.45 15.07 5.02 5.02 Total: -1.00 -38.01 333.45 -7.10 -45.11 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.91 Total: 6.96 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.66 Total: -1.04 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.28 Total: -54.95 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.19 Total: -18.52 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -38.01 -7.10 -45.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691610320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.206 kcal (2) G-P(sol) polarization free energy of solvation -38.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds