Wall clock time and date at job start Mon Mar 30 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 14 14 C 1.50699 * 109.47482 * 174.99860 * 11 10 9 15 15 O 1.21286 * 119.99857 * 100.00182 * 14 11 10 16 16 N 1.34781 * 120.00160 * 279.99980 * 14 11 10 17 17 C 1.47061 * 136.05652 * 359.63441 * 16 14 11 18 18 C 1.53757 * 87.89003 * 152.95839 * 17 16 14 19 19 C 1.52994 * 114.08977 * 139.77909 * 18 17 16 20 20 C 1.50692 * 109.47443 * 91.55924 * 19 18 17 21 21 N 1.34774 * 120.00379 * 179.97438 * 20 19 18 22 22 O 1.21281 * 119.99772 * 0.02562 * 20 19 18 23 23 C 1.47066 * 136.05566 * 179.97438 * 16 14 11 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.00906 * 111.00043 * 176.04212 * 13 11 10 30 30 H 1.00899 * 111.00057 * 299.99390 * 13 11 10 31 31 H 1.09000 * 113.46612 * 267.68921 * 17 16 14 32 32 H 1.09006 * 113.47134 * 38.12654 * 17 16 14 33 33 H 1.08996 * 114.57271 * 272.66505 * 18 17 16 34 34 H 1.09003 * 109.46961 * 211.56543 * 19 18 17 35 35 H 1.09006 * 109.46814 * 331.55704 * 19 18 17 36 36 H 0.97004 * 119.99989 * 0.02562 * 21 20 19 37 37 H 0.97001 * 120.00156 * 179.97438 * 21 20 19 38 38 H 1.09001 * 113.47085 * 321.87148 * 23 16 14 39 39 H 1.09000 * 113.46562 * 92.31304 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7877 -5.0072 -0.8404 13 7 0.7288 -5.1181 1.2567 14 6 2.4546 -6.1299 -0.1227 15 8 2.7868 -6.7532 0.8633 16 7 2.9571 -6.4594 -1.3292 17 6 2.8045 -5.9728 -2.7085 18 6 4.2219 -6.4980 -2.9902 19 6 4.3792 -7.1691 -4.3561 20 6 4.8175 -6.1453 -5.3713 21 7 5.0213 -6.5110 -6.6524 22 8 4.9878 -4.9925 -5.0353 23 6 3.8946 -7.4676 -1.8463 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.1644 -5.9545 1.2547 30 1 1.3489 -5.1022 2.0525 31 1 2.0290 -6.4942 -3.2695 32 1 2.7198 -4.8883 -2.7794 33 1 5.0205 -5.7920 -2.7626 34 1 5.1281 -7.9582 -4.2891 35 1 3.4251 -7.5987 -4.6618 36 1 4.8854 -7.4331 -6.9211 37 1 5.3030 -5.8519 -7.3060 38 1 4.7384 -7.6566 -1.1827 39 1 3.4066 -8.3834 -2.1799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691610320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:44 Heat of formation + Delta-G solvation = -85.086909 kcal Electronic energy + Delta-G solvation = -20537.062170 eV Core-core repulsion = 17285.817023 eV Total energy + Delta-G solvation = -3251.245147 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72853 -40.36453 -39.13935 -36.81436 -34.84178 -34.57373 -32.76610 -31.97859 -29.23377 -27.67224 -26.96099 -25.09160 -22.78042 -21.94746 -20.99021 -20.02194 -18.59224 -18.32616 -18.14035 -17.52591 -17.19214 -17.00755 -16.46345 -16.40765 -16.13469 -15.36716 -15.11488 -14.65391 -14.37949 -14.15188 -13.87045 -13.77583 -13.52077 -13.35103 -12.80874 -12.77349 -12.49745 -12.38351 -12.31368 -11.79910 -11.67169 -11.53163 -11.27573 -11.03084 -10.92013 -10.54675 -10.51243 -9.80650 -9.65712 -8.16017 -6.26623 1.39047 1.42682 1.43575 1.50629 1.77770 1.79875 2.42897 2.68833 3.16475 3.28958 3.42846 3.60281 3.84029 3.98270 4.02838 4.15149 4.25872 4.44174 4.53856 4.57727 4.61390 4.70878 4.76337 4.81792 4.89532 4.95405 5.19470 5.34383 5.52844 5.78903 5.94047 6.00048 6.04547 6.27537 6.46501 6.59238 6.60101 6.90115 6.99715 7.41186 7.49376 8.95190 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.004822 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.580924 B = 5805.135602 C = 7393.205155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.079 4.079 11 C 0.092 3.908 12 H 0.103 0.897 13 N -0.816 5.816 14 C 0.513 3.487 15 O -0.587 6.587 16 N -0.650 5.650 17 C 0.095 3.905 18 C -0.099 4.099 19 C -0.118 4.118 20 C 0.507 3.493 21 N -0.841 5.841 22 O -0.600 6.600 23 C 0.107 3.893 24 H 0.263 0.737 25 H 0.009 0.991 26 H -0.008 1.008 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.348 0.652 30 H 0.346 0.654 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.420 0.580 37 H 0.403 0.597 38 H 0.069 0.931 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -21.344 -15.065 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.006 3.994 10 C -0.118 4.118 11 C -0.023 4.023 12 H 0.121 0.879 13 N -0.345 5.345 14 C 0.302 3.698 15 O -0.468 6.468 16 N -0.384 5.384 17 C -0.027 4.027 18 C -0.119 4.119 19 C -0.158 4.158 20 C 0.293 3.707 21 N -0.405 5.405 22 O -0.480 6.480 23 C -0.015 4.015 24 H 0.072 0.928 25 H 0.027 0.973 26 H 0.010 0.990 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.252 0.748 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.863 -20.152 -14.149 25.848 hybrid contribution 0.826 0.224 -0.054 0.857 sum 8.689 -19.928 -14.203 25.968 Atomic orbital electron populations 1.70092 1.07564 1.27671 1.51465 1.25884 0.95746 1.02960 0.94763 0.85591 0.78405 0.78586 0.78995 1.19418 1.20403 1.19469 1.21669 0.93199 0.92848 1.50869 0.93043 1.18792 0.93710 0.91178 0.95721 1.21341 0.97763 0.92507 1.00154 1.21505 0.93506 0.92005 0.95308 0.87874 1.58996 1.27115 1.45301 1.03087 1.21954 0.81296 0.85308 0.81277 1.90623 1.62494 1.56253 1.37435 1.49762 1.46045 1.36193 1.06441 1.23538 0.98576 1.01208 0.79423 1.22642 0.96718 0.97904 0.94633 1.21597 1.06836 0.97349 0.90032 1.21217 0.75627 0.89218 0.84666 1.43792 1.71097 1.15961 1.09642 1.90820 1.53488 1.22981 1.80731 1.23281 0.92065 0.93414 0.92730 0.92788 0.97293 0.98957 0.92607 0.94055 0.83891 0.84071 0.86086 0.92080 0.89575 0.84425 0.84652 0.74839 0.76690 0.91205 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 46.37 29.54 68.60 2.03 48.40 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.55 -32.96 9.11 25.60 0.23 -32.73 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.04 2.40 4.86 29.85 0.15 2.54 16 10 C -0.08 -3.57 4.78 30.59 0.15 -3.43 16 11 C 0.09 3.45 2.98 44.17 0.13 3.58 16 12 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 13 N -0.82 -29.96 8.44 -171.81 -1.45 -31.41 16 14 C 0.51 17.92 7.32 87.66 0.64 18.56 16 15 O -0.59 -23.62 17.03 -3.05 -0.05 -23.67 16 16 N -0.65 -17.59 3.69 -857.77 -3.16 -20.75 16 17 C 0.09 2.04 8.00 83.27 0.67 2.71 16 18 C -0.10 -1.71 3.54 -10.38 -0.04 -1.74 16 19 C -0.12 -0.89 5.61 29.84 0.17 -0.72 16 20 C 0.51 7.67 8.10 87.65 0.71 8.38 16 21 N -0.84 -5.65 8.87 -173.54 -1.54 -7.19 16 22 O -0.60 -17.19 16.57 -3.03 -0.05 -17.24 16 23 C 0.11 1.89 8.19 83.17 0.68 2.57 16 24 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.01 0.52 7.75 -2.39 -0.02 0.50 16 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H 0.06 2.46 7.73 -2.39 -0.02 2.44 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.35 10.84 9.06 -89.69 -0.81 10.03 16 30 H 0.35 12.94 8.58 -89.69 -0.77 12.17 16 31 H 0.12 1.72 7.87 -2.39 -0.02 1.70 16 32 H 0.06 1.71 7.73 -2.38 -0.02 1.70 16 33 H 0.09 2.08 7.62 -2.39 -0.02 2.06 16 34 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.14 0.16 7.80 -2.38 -0.02 0.14 16 36 H 0.42 -0.59 8.83 -92.71 -0.82 -1.41 16 37 H 0.40 2.94 8.93 -92.71 -0.83 2.11 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.12 1.25 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -86.39 333.45 -2.13 -88.52 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -2.13 Total: 20.90 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 3.95 Total: 0.44 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -5.87 Total: -117.36 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.10 Total: -40.91 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -86.39 -2.13 -88.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691610320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.432 kcal (2) G-P(sol) polarization free energy of solvation -86.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds