Wall clock time and date at job start Mon Mar 30 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46710 * 2 1 4 4 H 1.08993 * 109.47385 * 305.00678 * 3 2 1 5 5 C 1.50705 * 109.47044 * 185.00116 * 3 2 1 6 6 H 1.07987 * 120.00536 * 240.00384 * 5 3 2 7 7 C 1.37882 * 119.99594 * 60.00292 * 5 3 2 8 8 N 1.31516 * 120.00023 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00044 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46911 * 119.99713 * 9 7 5 12 12 H 1.48493 * 109.47237 * 240.00301 * 9 7 5 13 13 N 1.46904 * 109.46969 * 65.00775 * 3 2 1 14 14 C 1.47843 * 111.00147 * 59.15251 * 13 3 2 15 15 C 1.54905 * 104.79750 * 146.36375 * 14 13 3 16 16 H 1.09000 * 110.99119 * 81.02124 * 15 14 13 17 17 C 1.50696 * 110.99215 * 204.84183 * 15 14 13 18 18 N 1.34781 * 119.99945 * 292.26119 * 17 15 14 19 19 O 1.21283 * 120.00135 * 112.26775 * 17 15 14 20 20 C 1.55146 * 101.65106 * 322.93175 * 15 14 13 21 21 H 1.08994 * 110.70408 * 277.26726 * 20 15 14 22 22 C 1.50700 * 110.85538 * 154.10356 * 20 15 14 23 23 N 1.34776 * 119.99972 * 184.85820 * 22 20 15 24 24 O 1.21281 * 119.99954 * 4.86233 * 22 20 15 25 25 C 1.47446 * 110.99960 * 179.97438 * 13 3 2 26 26 H 1.08994 * 109.47763 * 59.99300 * 1 2 3 27 27 H 1.09006 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46756 * 299.99387 * 1 2 3 29 29 H 1.09003 * 109.46999 * 240.01068 * 2 1 3 30 30 H 1.08995 * 109.47310 * 120.00420 * 2 1 3 31 31 H 0.96995 * 119.99790 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.37342 * 265.19375 * 14 13 3 33 33 H 1.09007 * 110.37035 * 27.53577 * 14 13 3 34 34 H 0.97001 * 119.99591 * 0.02562 * 18 17 15 35 35 H 0.96999 * 119.99885 * 180.02562 * 18 17 15 36 36 H 0.96995 * 120.00277 * 359.97438 * 23 22 20 37 37 H 0.96999 * 119.99852 * 180.02562 * 23 22 20 38 38 H 1.08998 * 109.88625 * 356.14916 * 25 13 3 39 39 H 1.09004 * 109.88617 * 117.17020 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8889 0.6521 7 6 4.1432 0.8786 -1.2281 8 7 3.4060 0.3377 -2.1735 9 14 6.0048 0.8815 -1.3821 10 1 6.5986 1.5465 -0.1945 11 1 6.4969 -0.5172 -1.4633 12 1 6.3987 1.6171 -2.6105 13 7 1.6514 2.0992 1.2553 14 6 2.2075 1.3823 2.4226 15 6 2.5049 2.4908 3.4629 16 1 1.6001 2.7748 4.0003 17 6 3.5850 2.0571 4.4201 18 7 3.3492 1.0595 5.2952 19 8 4.6665 2.6059 4.4030 20 6 2.9985 3.6481 2.5552 21 1 4.0540 3.5245 2.3130 22 6 2.7569 4.9838 3.2098 23 7 3.0267 6.1214 2.5394 24 8 2.3196 5.0350 4.3399 25 6 2.1274 3.4943 1.2913 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8290 -0.0600 -2.9504 32 1 1.4767 0.6768 2.8181 33 1 3.1261 0.8640 2.1472 34 1 2.4844 0.6205 5.3086 35 1 4.0444 0.7807 5.9115 36 1 3.3768 6.0805 1.6358 37 1 2.8715 6.9812 2.9609 38 1 2.7224 3.7060 0.4029 39 1 1.2774 4.1750 1.3390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693457422.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:52 Heat of formation + Delta-G solvation = -84.416088 kcal Electronic energy + Delta-G solvation = -22116.450016 eV Core-core repulsion = 18865.233958 eV Total energy + Delta-G solvation = -3251.216058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.32371 -38.59873 -37.63067 -34.10209 -33.53126 -33.28579 -31.74423 -29.93427 -28.64948 -26.45682 -23.38275 -23.28068 -21.55939 -20.39437 -19.34243 -19.09382 -17.50528 -17.28846 -16.47896 -16.30554 -16.11055 -15.04666 -14.93363 -14.51456 -13.98463 -13.79432 -13.25937 -13.12167 -12.91738 -12.72714 -12.42152 -11.77128 -11.54898 -11.24402 -11.03169 -10.94207 -10.75461 -10.70338 -10.39093 -10.20707 -9.79052 -9.68642 -9.59591 -9.52760 -9.48460 -9.45664 -9.08110 -8.43885 -7.34115 -6.07429 -4.20780 2.91529 2.96715 3.21666 3.31534 3.36929 3.69079 3.84450 4.34247 4.68376 4.85961 5.17067 5.18024 5.33643 5.50440 5.70572 5.82920 5.92488 6.25918 6.33233 6.39679 6.44733 6.52504 6.60598 6.63972 6.94896 6.96662 6.98286 7.10620 7.19479 7.50278 7.51859 7.54791 7.66214 7.83600 8.03084 8.11381 8.33578 8.48468 8.52590 8.88996 9.47571 10.92013 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.007361 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.330264 B = 3803.010816 C = 4039.724120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.206 3.794 4 H 0.043 0.957 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.071 3.929 8 N -0.882 5.882 9 Si 0.883 3.117 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.519 5.519 14 C 0.061 3.939 15 C -0.104 4.104 16 H 0.112 0.888 17 C 0.537 3.463 18 N -0.856 5.856 19 O -0.547 6.547 20 C -0.112 4.112 21 H 0.115 0.885 22 C 0.538 3.462 23 N -0.856 5.856 24 O -0.552 6.552 25 C 0.062 3.938 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.397 0.603 36 H 0.404 0.596 37 H 0.396 0.604 38 H 0.078 0.922 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 3.535 7.731 9.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C 0.100 3.900 4 H 0.061 0.939 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.132 4.132 8 N -0.520 5.520 9 Si 0.711 3.289 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.243 5.243 14 C -0.068 4.068 15 C -0.126 4.126 16 H 0.130 0.870 17 C 0.322 3.678 18 N -0.419 5.419 19 O -0.423 6.423 20 C -0.135 4.135 21 H 0.133 0.867 22 C 0.323 3.677 23 N -0.419 5.419 24 O -0.429 6.429 25 C -0.067 4.067 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.229 0.771 35 H 0.227 0.773 36 H 0.232 0.768 37 H 0.226 0.774 38 H 0.096 0.904 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.398 3.729 8.109 9.550 hybrid contribution 2.014 -0.059 -0.239 2.029 sum -1.384 3.670 7.869 8.793 Atomic orbital electron populations 1.21727 0.98738 0.98529 1.00688 1.21612 0.92341 0.99022 1.02125 1.19539 0.93254 0.91371 0.85849 0.93899 1.21778 0.92507 1.38542 1.05660 0.92334 1.24893 0.97772 0.94863 0.95672 1.69875 1.34771 1.38013 1.09350 0.86676 0.86232 0.77893 0.78131 1.19690 1.20995 1.20963 1.64027 1.55695 1.00484 1.04107 1.22902 0.99886 0.94500 0.89484 1.22348 0.97926 0.96763 0.95591 0.87003 1.20405 0.88610 0.78485 0.80308 1.43792 1.19259 1.38964 1.39880 1.90694 1.25997 1.55146 1.70500 1.22438 1.03725 0.90650 0.96657 0.86684 1.20476 0.75401 0.86297 0.85527 1.43828 1.69658 1.08360 1.20008 1.90671 1.45514 1.87911 1.18816 1.22627 0.96108 0.92823 0.95161 0.94090 0.95535 0.93377 0.88819 0.94960 0.92858 0.90973 0.91106 0.77070 0.77299 0.76791 0.77352 0.90385 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.80 37.16 0.36 -2.27 16 2 C -0.11 -2.47 5.10 -26.73 -0.14 -2.60 16 3 C 0.21 4.65 1.67 -68.86 -0.12 4.53 16 4 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 5 C -0.55 -13.47 6.23 -34.44 -0.21 -13.69 16 6 H 0.06 1.47 6.37 -52.49 -0.33 1.14 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -23.50 11.29 55.43 0.63 -22.88 16 9 Si 0.88 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.52 -9.94 4.66 -224.70 -1.05 -10.99 16 14 C 0.06 1.07 4.42 -2.30 -0.01 1.06 16 15 C -0.10 -1.73 2.48 -89.63 -0.22 -1.95 16 16 H 0.11 1.80 7.50 -51.93 -0.39 1.41 16 17 C 0.54 9.15 7.41 -10.99 -0.08 9.07 16 18 N -0.86 -10.44 8.87 31.22 0.28 -10.17 16 19 O -0.55 -11.42 16.55 5.55 0.09 -11.33 16 20 C -0.11 -1.93 2.25 -89.97 -0.20 -2.13 16 21 H 0.12 2.19 7.15 -51.93 -0.37 1.82 16 22 C 0.54 8.83 7.29 -10.99 -0.08 8.75 16 23 N -0.86 -10.30 8.82 31.22 0.28 -10.02 16 24 O -0.55 -10.70 16.61 5.56 0.09 -10.61 16 25 C 0.06 1.08 5.71 -2.86 -0.02 1.06 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.86 7.75 -51.93 -0.40 0.46 16 29 H 0.09 2.34 5.95 -51.93 -0.31 2.03 16 30 H 0.03 0.69 6.85 -51.93 -0.36 0.33 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.07 1.14 8.10 -51.93 -0.42 0.71 16 33 H 0.07 1.44 6.09 -51.93 -0.32 1.13 16 34 H 0.40 3.72 8.83 -40.82 -0.36 3.36 16 35 H 0.40 4.24 8.93 -40.82 -0.36 3.87 16 36 H 0.40 4.04 8.82 -40.82 -0.36 3.68 16 37 H 0.40 4.02 8.93 -40.82 -0.36 3.66 16 38 H 0.08 1.45 6.84 -51.93 -0.36 1.10 16 39 H 0.06 1.01 7.82 -51.93 -0.41 0.60 16 LS Contribution 314.01 15.07 4.73 4.73 Total: -1.00 -31.62 314.01 -6.30 -37.91 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.51 Total: 14.36 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.81 Total: 3.57 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.13 Total: -54.06 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.18 Total: -21.93 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.62 -6.30 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693457422.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.504 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds