Wall clock time and date at job start Mon Mar 30 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46710 * 2 1 4 4 H 1.08993 * 109.47385 * 305.00678 * 3 2 1 5 5 C 1.50705 * 109.47044 * 185.00116 * 3 2 1 6 6 H 1.07987 * 120.00536 * 240.00384 * 5 3 2 7 7 C 1.37882 * 119.99594 * 60.00292 * 5 3 2 8 8 N 1.31516 * 120.00023 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00044 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46911 * 119.99713 * 9 7 5 12 12 H 1.48493 * 109.47237 * 240.00301 * 9 7 5 13 13 N 1.46904 * 109.46969 * 65.00775 * 3 2 1 14 14 C 1.47843 * 111.00147 * 59.15251 * 13 3 2 15 15 C 1.54905 * 104.79750 * 146.36375 * 14 13 3 16 16 H 1.09000 * 110.99119 * 81.02124 * 15 14 13 17 17 C 1.50696 * 110.99215 * 204.84183 * 15 14 13 18 18 N 1.34781 * 119.99945 * 292.26119 * 17 15 14 19 19 O 1.21283 * 120.00135 * 112.26775 * 17 15 14 20 20 C 1.55146 * 101.65106 * 322.93175 * 15 14 13 21 21 H 1.08994 * 110.70408 * 277.26726 * 20 15 14 22 22 C 1.50700 * 110.85538 * 154.10356 * 20 15 14 23 23 N 1.34776 * 119.99972 * 184.85820 * 22 20 15 24 24 O 1.21281 * 119.99954 * 4.86233 * 22 20 15 25 25 C 1.47446 * 110.99960 * 179.97438 * 13 3 2 26 26 H 1.08994 * 109.47763 * 59.99300 * 1 2 3 27 27 H 1.09006 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46756 * 299.99387 * 1 2 3 29 29 H 1.09003 * 109.46999 * 240.01068 * 2 1 3 30 30 H 1.08995 * 109.47310 * 120.00420 * 2 1 3 31 31 H 0.96995 * 119.99790 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.37342 * 265.19375 * 14 13 3 33 33 H 1.09007 * 110.37035 * 27.53577 * 14 13 3 34 34 H 0.97001 * 119.99591 * 0.02562 * 18 17 15 35 35 H 0.96999 * 119.99885 * 180.02562 * 18 17 15 36 36 H 0.96995 * 120.00277 * 359.97438 * 23 22 20 37 37 H 0.96999 * 119.99852 * 180.02562 * 23 22 20 38 38 H 1.08998 * 109.88625 * 356.14916 * 25 13 3 39 39 H 1.09004 * 109.88617 * 117.17020 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8889 0.6521 7 6 4.1432 0.8786 -1.2281 8 7 3.4060 0.3377 -2.1735 9 14 6.0048 0.8815 -1.3821 10 1 6.5986 1.5465 -0.1945 11 1 6.4969 -0.5172 -1.4633 12 1 6.3987 1.6171 -2.6105 13 7 1.6514 2.0992 1.2553 14 6 2.2075 1.3823 2.4226 15 6 2.5049 2.4908 3.4629 16 1 1.6001 2.7748 4.0003 17 6 3.5850 2.0571 4.4201 18 7 3.3492 1.0595 5.2952 19 8 4.6665 2.6059 4.4030 20 6 2.9985 3.6481 2.5552 21 1 4.0540 3.5245 2.3130 22 6 2.7569 4.9838 3.2098 23 7 3.0267 6.1214 2.5394 24 8 2.3196 5.0350 4.3399 25 6 2.1274 3.4943 1.2913 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8290 -0.0600 -2.9504 32 1 1.4767 0.6768 2.8181 33 1 3.1261 0.8640 2.1472 34 1 2.4844 0.6205 5.3086 35 1 4.0444 0.7807 5.9115 36 1 3.3768 6.0805 1.6358 37 1 2.8715 6.9812 2.9609 38 1 2.7224 3.7060 0.4029 39 1 1.2774 4.1750 1.3390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693457422.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:51 Heat of formation + Delta-G solvation = -112.250945 kcal Electronic energy + Delta-G solvation = -22117.657026 eV Core-core repulsion = 18865.233958 eV Total energy + Delta-G solvation = -3252.423068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70515 -39.92228 -39.16190 -35.78615 -34.76925 -34.50989 -33.57614 -31.44731 -30.04761 -28.27642 -25.11099 -24.65510 -23.07857 -21.70910 -20.80762 -20.66248 -18.81760 -18.58906 -18.09458 -17.64196 -17.45025 -16.77373 -16.31396 -15.97786 -15.56605 -15.27224 -14.76570 -14.68914 -14.45916 -14.22894 -13.97694 -13.29096 -13.18029 -13.04128 -12.73603 -12.52558 -12.45209 -12.22981 -12.04681 -11.86131 -11.49437 -11.35705 -11.11630 -11.01040 -10.75884 -10.64824 -10.63976 -10.39411 -9.00213 -8.02287 -6.21700 1.34862 1.41210 1.49342 1.60213 1.63374 2.41021 2.52024 2.65795 3.17978 3.31847 3.47248 3.78295 4.02322 4.24732 4.34433 4.46817 4.51403 4.64678 4.80619 4.90427 4.98277 5.00218 5.08164 5.18855 5.28030 5.50788 5.52185 5.66481 5.84124 5.91045 5.91409 6.06785 6.18585 6.37887 6.39342 6.45170 6.53366 6.98136 7.32171 7.34887 7.48521 8.93425 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.007361 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.330264 B = 3803.010816 C = 4039.724120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C 0.215 3.785 4 H 0.014 0.986 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 0.933 3.067 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.516 5.516 14 C 0.067 3.933 15 C -0.096 4.096 16 H 0.125 0.875 17 C 0.531 3.469 18 N -0.832 5.832 19 O -0.592 6.592 20 C -0.109 4.109 21 H 0.093 0.907 22 C 0.538 3.462 23 N -0.834 5.834 24 O -0.582 6.582 25 C 0.066 3.934 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.418 0.582 35 H 0.408 0.592 36 H 0.415 0.585 37 H 0.410 0.590 38 H 0.063 0.937 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.959 3.685 8.838 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.147 4.147 3 C 0.107 3.893 4 H 0.032 0.968 5 C -0.582 4.582 6 H 0.068 0.932 7 C -0.171 4.171 8 N -0.545 5.545 9 Si 0.760 3.240 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.206 1.206 13 N -0.239 5.239 14 C -0.062 4.062 15 C -0.118 4.118 16 H 0.142 0.858 17 C 0.316 3.684 18 N -0.395 5.395 19 O -0.472 6.472 20 C -0.132 4.132 21 H 0.111 0.889 22 C 0.322 3.678 23 N -0.397 5.397 24 O -0.462 6.462 25 C -0.063 4.063 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.250 0.750 35 H 0.239 0.761 36 H 0.246 0.754 37 H 0.242 0.758 38 H 0.081 0.919 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.173 3.875 9.216 10.833 hybrid contribution 2.246 -0.087 -0.558 2.316 sum -1.927 3.788 8.657 9.644 Atomic orbital electron populations 1.21597 0.96167 0.99848 1.00917 1.21462 0.94583 0.97992 1.00655 1.19288 0.91694 0.91781 0.86503 0.96839 1.21972 0.93825 1.37405 1.04960 0.93210 1.25444 1.00624 0.95185 0.95851 1.69979 1.35765 1.38976 1.09748 0.85902 0.82827 0.77551 0.77694 1.20322 1.21059 1.20619 1.64009 1.55545 1.01130 1.03237 1.22875 0.99218 0.94909 0.89159 1.22287 0.98283 0.95978 0.95285 0.85766 1.20498 0.87942 0.79089 0.80904 1.43574 1.20412 1.37167 1.38357 1.90676 1.27549 1.57007 1.71987 1.22311 1.02263 0.91908 0.96679 0.88881 1.20301 0.75437 0.86832 0.85195 1.43624 1.67947 1.07896 1.20256 1.90657 1.47280 1.88308 1.19966 1.22607 0.96617 0.92260 0.94782 0.94876 0.93685 0.92034 0.91991 0.94654 0.92988 0.88392 0.93908 0.75042 0.76063 0.75441 0.75807 0.91892 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.80 71.98 0.71 -3.90 16 2 C -0.11 -4.70 5.10 30.59 0.16 -4.54 16 3 C 0.21 9.68 1.67 44.17 0.07 9.76 16 4 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 5 C -0.54 -27.06 6.23 25.60 0.16 -26.90 16 6 H 0.05 2.54 6.37 -2.92 -0.02 2.52 16 7 C 0.03 1.53 5.29 84.66 0.45 1.98 16 8 N -0.91 -48.93 11.29 21.45 0.24 -48.69 16 9 Si 0.93 42.43 29.54 68.60 2.03 44.46 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.52 -19.22 4.66 -864.82 -4.03 -23.25 16 14 C 0.07 2.25 4.42 86.77 0.38 2.64 16 15 C -0.10 -3.06 2.48 -10.15 -0.03 -3.08 16 16 H 0.12 3.70 7.50 -2.39 -0.02 3.68 16 17 C 0.53 17.47 7.41 87.65 0.65 18.12 16 18 N -0.83 -18.50 8.87 -173.53 -1.54 -20.04 16 19 O -0.59 -24.60 16.55 -3.04 -0.05 -24.65 16 20 C -0.11 -3.66 2.25 -10.37 -0.02 -3.69 16 21 H 0.09 3.59 7.15 -2.39 -0.02 3.57 16 22 C 0.54 16.95 7.29 87.66 0.64 17.59 16 23 N -0.83 -18.62 8.82 -173.53 -1.53 -20.15 16 24 O -0.58 -21.72 16.61 -3.03 -0.05 -21.77 16 25 C 0.07 2.26 5.71 86.63 0.49 2.75 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.06 2.04 7.75 -2.38 -0.02 2.02 16 29 H 0.06 3.11 5.95 -2.39 -0.01 3.10 16 30 H 0.03 1.47 6.85 -2.39 -0.02 1.45 16 31 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 32 H 0.10 2.80 8.10 -2.39 -0.02 2.78 16 33 H 0.04 1.72 6.09 -2.38 -0.01 1.70 16 34 H 0.42 6.52 8.83 -92.71 -0.82 5.70 16 35 H 0.41 7.84 8.93 -92.71 -0.83 7.01 16 36 H 0.41 7.62 8.82 -92.71 -0.82 6.81 16 37 H 0.41 7.43 8.93 -92.71 -0.83 6.60 16 38 H 0.06 2.34 6.84 -2.39 -0.02 2.33 16 39 H 0.08 2.47 7.82 -2.39 -0.02 2.45 16 Total: -1.00 -68.24 314.01 -3.44 -71.68 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -2.17 Total: 31.69 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 3.66 Total: 10.72 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -6.86 Total: -112.13 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.10 Total: -46.42 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -68.24 -3.44 -71.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693457422.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.570 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds