Wall clock time and date at job start Mon Mar 30 2020 05:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47185 * 2 1 4 4 H 1.09005 * 109.47000 * 304.66679 * 3 2 1 5 5 C 1.50697 * 109.46976 * 184.66843 * 3 2 1 6 6 H 1.07996 * 120.00202 * 245.36978 * 5 3 2 7 7 C 1.37881 * 119.99716 * 65.10178 * 5 3 2 8 8 N 1.31514 * 120.00159 * 7.03435 * 7 5 3 9 9 Si 1.86800 * 119.99534 * 187.03581 * 7 5 3 10 10 H 1.48496 * 109.47565 * 94.18967 * 9 7 5 11 11 H 1.48501 * 109.46834 * 214.18933 * 9 7 5 12 12 H 1.48495 * 109.47480 * 334.18285 * 9 7 5 13 13 N 1.46902 * 109.47150 * 64.66555 * 3 2 1 14 14 C 1.47443 * 110.99840 * 59.16002 * 13 3 2 15 15 C 1.54314 * 107.23364 * 123.25453 * 14 13 3 16 16 H 1.09006 * 110.70914 * 263.90386 * 15 14 13 17 17 C 1.50697 * 110.70597 * 140.66872 * 15 14 13 18 18 N 1.34775 * 120.00232 * 66.40222 * 17 15 14 19 19 O 1.21289 * 119.99707 * 246.39761 * 17 15 14 20 20 C 1.55141 * 103.01825 * 22.28258 * 15 14 13 21 21 H 1.09000 * 110.98715 * 82.44094 * 20 15 14 22 22 C 1.50705 * 110.98889 * 206.25385 * 20 15 14 23 23 N 1.34779 * 119.99701 * 173.72035 * 22 20 15 24 24 O 1.21276 * 120.00457 * 353.72586 * 22 20 15 25 25 C 1.47841 * 110.99812 * 180.02562 * 13 3 2 26 26 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47260 * 300.00014 * 1 2 3 28 28 H 1.09004 * 109.47170 * 60.00132 * 1 2 3 29 29 H 1.08996 * 109.46796 * 239.99464 * 2 1 3 30 30 H 1.09003 * 109.46696 * 119.99633 * 2 1 3 31 31 H 0.96997 * 119.99608 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.89088 * 242.66003 * 14 13 3 33 33 H 1.09007 * 109.88907 * 3.85094 * 14 13 3 34 34 H 0.96992 * 119.99879 * 359.97438 * 18 17 15 35 35 H 0.96997 * 119.99872 * 180.02562 * 18 17 15 36 36 H 0.96996 * 119.99754 * 0.02562 * 23 22 20 37 37 H 0.96996 * 119.99932 * 179.97438 * 23 22 20 38 38 H 1.09001 * 110.37572 * 332.46684 * 25 13 3 39 39 H 1.08999 * 110.37746 * 94.69860 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6100 1.9799 -0.8453 5 6 3.5426 1.4440 -0.1156 6 1 4.1466 1.8111 0.7008 7 6 4.1462 0.9716 -1.2617 8 7 3.4141 0.6494 -2.3056 9 14 6.0040 0.7891 -1.3315 10 1 6.3791 -0.6003 -0.9655 11 1 6.4789 1.0839 -2.7073 12 1 6.6309 1.7387 -0.3774 13 7 1.6445 2.1017 1.2518 14 6 2.1927 1.3891 2.4203 15 6 3.0276 2.4065 3.2261 16 1 4.0827 2.3346 2.9618 17 6 2.8324 2.2025 4.7064 18 7 3.2734 1.0731 5.2949 19 8 2.2786 3.0548 5.3681 20 6 2.4419 3.7716 2.7785 21 1 1.5358 4.0093 3.3358 22 6 3.4640 4.8700 2.9200 23 7 3.1900 6.1082 2.4638 24 8 4.5330 4.6397 3.4444 25 6 2.1208 3.5009 1.2871 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8388 0.3166 -3.1117 32 1 1.3791 1.0063 3.0365 33 1 2.8281 0.5675 2.0892 34 1 3.7160 0.3914 4.7656 35 1 3.1474 0.9416 6.2476 36 1 2.3349 6.2925 2.0446 37 1 3.8477 6.8153 2.5552 38 1 3.0189 3.6115 0.6795 39 1 1.3406 4.1763 0.9362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693457424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:54 Heat of formation + Delta-G solvation = -84.932378 kcal Electronic energy + Delta-G solvation = -22108.647860 eV Core-core repulsion = 18857.409414 eV Total energy + Delta-G solvation = -3251.238446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32286 -38.59200 -37.64226 -34.08778 -33.52469 -33.27807 -31.80678 -29.92544 -28.65402 -26.47379 -23.42685 -23.23364 -21.61628 -20.39864 -19.54607 -18.79538 -17.49262 -17.33840 -16.50352 -16.32329 -16.12391 -15.23033 -14.81146 -14.49972 -13.95484 -13.80212 -13.34803 -13.08975 -12.95407 -12.62458 -12.46874 -11.80088 -11.47809 -11.31643 -11.06524 -10.98173 -10.75735 -10.65311 -10.47736 -10.20556 -9.81450 -9.64428 -9.59319 -9.51555 -9.47824 -9.45042 -9.18926 -8.45043 -7.33724 -6.10463 -4.20337 2.92528 2.96733 3.21991 3.30840 3.35087 3.69974 3.84914 4.34045 4.67908 4.85536 5.16872 5.18198 5.33669 5.50431 5.70897 5.83794 5.91889 6.20620 6.31437 6.35126 6.45686 6.51223 6.55318 6.65602 6.94420 6.95884 6.98219 7.06896 7.14046 7.47884 7.50969 7.55144 7.60382 7.80006 7.98698 8.09691 8.28899 8.49560 8.52360 8.89288 9.47035 10.92014 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.007625 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.447720 B = 3671.164526 C = 4158.416122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.205 3.795 4 H 0.049 0.951 5 C -0.549 4.549 6 H 0.058 0.942 7 C 0.073 3.927 8 N -0.881 5.881 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.519 5.519 14 C 0.062 3.938 15 C -0.113 4.113 16 H 0.112 0.888 17 C 0.539 3.461 18 N -0.856 5.856 19 O -0.551 6.551 20 C -0.103 4.103 21 H 0.115 0.885 22 C 0.536 3.464 23 N -0.856 5.856 24 O -0.548 6.548 25 C 0.057 3.943 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.403 0.597 35 H 0.396 0.604 36 H 0.402 0.598 37 H 0.397 0.603 38 H 0.072 0.928 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.907 2.956 7.750 8.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C 0.098 3.902 4 H 0.067 0.933 5 C -0.587 4.587 6 H 0.076 0.924 7 C -0.130 4.130 8 N -0.518 5.518 9 Si 0.709 3.291 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.243 5.243 14 C -0.066 4.066 15 C -0.135 4.135 16 H 0.130 0.870 17 C 0.324 3.676 18 N -0.419 5.419 19 O -0.429 6.429 20 C -0.126 4.126 21 H 0.133 0.867 22 C 0.322 3.678 23 N -0.419 5.419 24 O -0.424 6.424 25 C -0.071 4.071 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.231 0.769 35 H 0.226 0.774 36 H 0.230 0.770 37 H 0.227 0.773 38 H 0.091 0.909 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.200 3.180 8.167 9.330 hybrid contribution 2.091 -0.174 -0.246 2.113 sum -1.109 3.007 7.921 8.545 Atomic orbital electron populations 1.21726 0.98456 0.98648 1.00934 1.21568 0.92702 0.99057 1.01126 1.19514 0.93290 0.91062 0.86291 0.93348 1.21708 0.92379 1.43051 1.01597 0.92424 1.24892 0.97680 0.95074 0.95400 1.69937 1.35203 1.43529 1.03159 0.86754 0.86339 0.78557 0.77487 1.20615 1.21234 1.19835 1.64020 1.55732 1.00666 1.03863 1.22673 0.96102 0.96061 0.91811 1.22459 1.03467 0.96349 0.91258 0.87000 1.20452 0.76255 0.80824 0.90076 1.43821 1.63388 1.21620 1.13042 1.90670 1.43094 1.43140 1.65949 1.22351 0.98346 0.92055 0.99800 0.86709 1.20424 0.87744 0.83617 0.76063 1.43796 1.21952 1.11791 1.64318 1.90691 1.25666 1.82445 1.43638 1.22926 1.00392 0.92229 0.91563 0.95477 0.93137 0.93932 0.90475 0.94583 0.92808 0.92072 0.90225 0.76863 0.77358 0.77018 0.77297 0.90937 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.80 37.16 0.36 -2.25 16 2 C -0.11 -2.27 5.10 -26.73 -0.14 -2.41 16 3 C 0.20 4.59 1.67 -68.86 -0.11 4.48 16 4 H 0.05 1.23 8.11 -51.93 -0.42 0.81 16 5 C -0.55 -13.47 6.13 -34.44 -0.21 -13.68 16 6 H 0.06 1.44 6.40 -52.49 -0.34 1.10 16 7 C 0.07 1.88 5.20 -17.82 -0.09 1.79 16 8 N -0.88 -23.58 12.02 55.43 0.67 -22.92 16 9 Si 0.88 20.34 29.54 -169.99 -5.02 15.31 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.52 -9.90 4.65 -224.66 -1.04 -10.95 16 14 C 0.06 1.09 4.93 -2.84 -0.01 1.08 16 15 C -0.11 -1.93 2.20 -89.95 -0.20 -2.13 16 16 H 0.11 2.10 7.23 -51.93 -0.38 1.73 16 17 C 0.54 8.90 7.27 -10.99 -0.08 8.82 16 18 N -0.86 -10.40 8.87 31.22 0.28 -10.12 16 19 O -0.55 -10.75 16.54 5.55 0.09 -10.65 16 20 C -0.10 -1.71 2.52 -89.62 -0.23 -1.94 16 21 H 0.12 1.87 7.40 -51.93 -0.38 1.49 16 22 C 0.54 9.10 7.43 -10.98 -0.08 9.02 16 23 N -0.86 -10.43 8.82 31.22 0.28 -10.15 16 24 O -0.55 -11.35 16.63 5.56 0.09 -11.26 16 25 C 0.06 1.01 5.80 -2.29 -0.01 0.99 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.91 7.74 -51.93 -0.40 0.50 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.87 6.68 -51.93 -0.35 1.52 16 30 H 0.04 0.74 6.32 -51.93 -0.33 0.41 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.06 1.01 7.81 -51.93 -0.41 0.61 16 33 H 0.08 1.48 5.59 -51.92 -0.29 1.19 16 34 H 0.40 4.06 8.83 -40.82 -0.36 3.70 16 35 H 0.40 4.07 8.93 -40.82 -0.36 3.71 16 36 H 0.40 3.75 8.83 -40.82 -0.36 3.39 16 37 H 0.40 4.24 8.93 -40.82 -0.36 3.87 16 38 H 0.07 1.46 6.29 -51.93 -0.33 1.14 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 314.28 15.07 4.74 4.74 Total: -1.00 -31.65 314.28 -6.20 -37.85 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.47 Total: 14.40 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.80 Total: 3.76 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.17 Total: -54.14 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.18 Total: -21.92 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.65 -6.20 -37.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693457424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.086 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds