Wall clock time and date at job start Mon Mar 30 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47185 * 2 1 4 4 H 1.09005 * 109.47000 * 304.66679 * 3 2 1 5 5 C 1.50697 * 109.46976 * 184.66843 * 3 2 1 6 6 H 1.07996 * 120.00202 * 245.36978 * 5 3 2 7 7 C 1.37881 * 119.99716 * 65.10178 * 5 3 2 8 8 N 1.31514 * 120.00159 * 7.03435 * 7 5 3 9 9 Si 1.86800 * 119.99534 * 187.03581 * 7 5 3 10 10 H 1.48496 * 109.47565 * 94.18967 * 9 7 5 11 11 H 1.48501 * 109.46834 * 214.18933 * 9 7 5 12 12 H 1.48495 * 109.47480 * 334.18285 * 9 7 5 13 13 N 1.46902 * 109.47150 * 64.66555 * 3 2 1 14 14 C 1.47443 * 110.99840 * 59.16002 * 13 3 2 15 15 C 1.54314 * 107.23364 * 123.25453 * 14 13 3 16 16 H 1.09006 * 110.70914 * 263.90386 * 15 14 13 17 17 C 1.50697 * 110.70597 * 140.66872 * 15 14 13 18 18 N 1.34775 * 120.00232 * 66.40222 * 17 15 14 19 19 O 1.21289 * 119.99707 * 246.39761 * 17 15 14 20 20 C 1.55141 * 103.01825 * 22.28258 * 15 14 13 21 21 H 1.09000 * 110.98715 * 82.44094 * 20 15 14 22 22 C 1.50705 * 110.98889 * 206.25385 * 20 15 14 23 23 N 1.34779 * 119.99701 * 173.72035 * 22 20 15 24 24 O 1.21276 * 120.00457 * 353.72586 * 22 20 15 25 25 C 1.47841 * 110.99812 * 180.02562 * 13 3 2 26 26 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47260 * 300.00014 * 1 2 3 28 28 H 1.09004 * 109.47170 * 60.00132 * 1 2 3 29 29 H 1.08996 * 109.46796 * 239.99464 * 2 1 3 30 30 H 1.09003 * 109.46696 * 119.99633 * 2 1 3 31 31 H 0.96997 * 119.99608 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.89088 * 242.66003 * 14 13 3 33 33 H 1.09007 * 109.88907 * 3.85094 * 14 13 3 34 34 H 0.96992 * 119.99879 * 359.97438 * 18 17 15 35 35 H 0.96997 * 119.99872 * 180.02562 * 18 17 15 36 36 H 0.96996 * 119.99754 * 0.02562 * 23 22 20 37 37 H 0.96996 * 119.99932 * 179.97438 * 23 22 20 38 38 H 1.09001 * 110.37572 * 332.46684 * 25 13 3 39 39 H 1.08999 * 110.37746 * 94.69860 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6100 1.9799 -0.8453 5 6 3.5426 1.4440 -0.1156 6 1 4.1466 1.8111 0.7008 7 6 4.1462 0.9716 -1.2617 8 7 3.4141 0.6494 -2.3056 9 14 6.0040 0.7891 -1.3315 10 1 6.3791 -0.6003 -0.9655 11 1 6.4789 1.0839 -2.7073 12 1 6.6309 1.7387 -0.3774 13 7 1.6445 2.1017 1.2518 14 6 2.1927 1.3891 2.4203 15 6 3.0276 2.4065 3.2261 16 1 4.0827 2.3346 2.9618 17 6 2.8324 2.2025 4.7064 18 7 3.2734 1.0731 5.2949 19 8 2.2786 3.0548 5.3681 20 6 2.4419 3.7716 2.7785 21 1 1.5358 4.0093 3.3358 22 6 3.4640 4.8700 2.9200 23 7 3.1900 6.1082 2.4638 24 8 4.5330 4.6397 3.4444 25 6 2.1208 3.5009 1.2871 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8388 0.3166 -3.1117 32 1 1.3791 1.0063 3.0365 33 1 2.8281 0.5675 2.0892 34 1 3.7160 0.3914 4.7656 35 1 3.1474 0.9416 6.2476 36 1 2.3349 6.2925 2.0446 37 1 3.8477 6.8153 2.5552 38 1 3.0189 3.6115 0.6795 39 1 1.3406 4.1763 0.9362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693457424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:53 Heat of formation + Delta-G solvation = -112.800554 kcal Electronic energy + Delta-G solvation = -22109.856315 eV Core-core repulsion = 18857.409414 eV Total energy + Delta-G solvation = -3252.446901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70265 -39.91575 -39.16758 -35.75595 -34.76146 -34.50415 -33.63995 -31.43082 -30.04398 -28.28780 -25.11534 -24.63914 -23.13417 -21.70662 -21.04154 -20.30100 -18.86544 -18.63573 -18.09992 -17.63720 -17.45659 -16.84598 -16.30100 -16.00332 -15.46417 -15.29105 -14.81073 -14.70821 -14.42420 -14.15467 -14.02480 -13.27471 -13.25733 -12.96778 -12.76961 -12.58049 -12.41663 -12.21591 -12.04968 -11.91154 -11.47567 -11.36389 -11.08618 -10.94418 -10.86472 -10.65016 -10.63514 -10.40549 -8.99174 -8.05278 -6.20916 1.36329 1.41666 1.48242 1.60919 1.63862 2.41543 2.52857 2.66373 3.18183 3.31548 3.46679 3.78785 4.03626 4.24100 4.34843 4.47725 4.50880 4.61894 4.76225 4.90171 4.94293 5.01279 5.08634 5.20738 5.27666 5.48441 5.48684 5.66183 5.81228 5.90568 5.92328 5.98122 6.18717 6.35359 6.40404 6.44700 6.51828 6.98976 7.33508 7.34105 7.48513 8.93852 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.007625 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.447720 B = 3671.164526 C = 4158.416122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C 0.214 3.786 4 H 0.015 0.985 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.031 3.969 8 N -0.908 5.908 9 Si 0.931 3.069 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.516 5.516 14 C 0.069 3.931 15 C -0.110 4.110 16 H 0.093 0.907 17 C 0.538 3.462 18 N -0.834 5.834 19 O -0.582 6.582 20 C -0.095 4.095 21 H 0.125 0.875 22 C 0.530 3.470 23 N -0.832 5.832 24 O -0.591 6.591 25 C 0.061 3.939 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.261 0.739 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.415 0.585 35 H 0.410 0.590 36 H 0.418 0.582 37 H 0.408 0.592 38 H 0.044 0.956 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 3.004 8.865 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.140 4.140 3 C 0.107 3.893 4 H 0.033 0.967 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.170 4.170 8 N -0.546 5.546 9 Si 0.758 3.242 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.240 5.240 14 C -0.060 4.060 15 C -0.133 4.133 16 H 0.111 0.889 17 C 0.323 3.677 18 N -0.397 5.397 19 O -0.462 6.462 20 C -0.117 4.117 21 H 0.143 0.857 22 C 0.315 3.685 23 N -0.396 5.396 24 O -0.471 6.471 25 C -0.067 4.067 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.245 0.755 35 H 0.242 0.758 36 H 0.249 0.751 37 H 0.239 0.761 38 H 0.062 0.938 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.780 3.227 9.279 10.526 hybrid contribution 2.264 -0.150 -0.574 2.340 sum -1.516 3.077 8.705 9.356 Atomic orbital electron populations 1.21600 0.96091 0.99974 1.00985 1.21430 0.94766 0.97884 0.99936 1.19255 0.91746 0.91580 0.86765 0.96667 1.21925 0.93702 1.41709 1.00948 0.93084 1.25453 1.00610 0.95463 0.95481 1.70032 1.36282 1.44793 1.03530 0.85969 0.82813 0.78412 0.76963 1.20035 1.21415 1.20414 1.63998 1.55621 1.01313 1.03030 1.22637 0.96450 0.95601 0.91320 1.22349 1.02217 0.96658 0.92080 0.88907 1.20293 0.76324 0.81493 0.89598 1.43616 1.61805 1.20450 1.13875 1.90657 1.44853 1.44426 1.66311 1.22274 0.98585 0.91976 0.98837 0.85749 1.20515 0.87131 0.84848 0.75979 1.43589 1.22889 1.10542 1.62533 1.90671 1.27208 1.83338 1.45921 1.22917 0.99927 0.91907 0.91968 0.93533 0.92073 0.94788 0.93613 0.93750 0.93005 0.90362 0.91339 0.75450 0.75841 0.75083 0.76061 0.93770 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.80 71.98 0.71 -3.91 16 2 C -0.10 -4.31 5.10 30.60 0.16 -4.15 16 3 C 0.21 9.59 1.67 44.17 0.07 9.66 16 4 H 0.02 0.79 8.11 -2.38 -0.02 0.77 16 5 C -0.54 -26.90 6.13 25.60 0.16 -26.74 16 6 H 0.05 2.56 6.40 -2.91 -0.02 2.54 16 7 C 0.03 1.59 5.20 84.66 0.44 2.03 16 8 N -0.91 -49.33 12.02 21.45 0.26 -49.07 16 9 Si 0.93 42.08 29.54 68.60 2.03 44.11 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.52 -19.16 4.65 -864.70 -4.02 -23.17 16 14 C 0.07 2.30 4.93 86.65 0.43 2.72 16 15 C -0.11 -3.68 2.20 -10.36 -0.02 -3.70 16 16 H 0.09 3.49 7.23 -2.38 -0.02 3.47 16 17 C 0.54 16.94 7.27 87.66 0.64 17.58 16 18 N -0.83 -18.52 8.87 -173.53 -1.54 -20.06 16 19 O -0.58 -21.81 16.54 -3.06 -0.05 -21.87 16 20 C -0.09 -3.02 2.52 -10.14 -0.03 -3.04 16 21 H 0.12 3.79 7.40 -2.39 -0.02 3.77 16 22 C 0.53 17.47 7.43 87.66 0.65 18.12 16 23 N -0.83 -18.80 8.82 -173.53 -1.53 -20.33 16 24 O -0.59 -24.35 16.63 -3.02 -0.05 -24.40 16 25 C 0.06 2.09 5.80 86.78 0.50 2.59 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 2.04 7.74 -2.39 -0.02 2.03 16 28 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.05 2.23 6.68 -2.39 -0.02 2.21 16 30 H 0.04 1.77 6.32 -2.39 -0.02 1.76 16 31 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 32 H 0.08 2.39 7.81 -2.39 -0.02 2.37 16 33 H 0.07 2.47 5.59 -2.38 -0.01 2.45 16 34 H 0.41 7.47 8.83 -92.71 -0.82 6.65 16 35 H 0.41 7.41 8.93 -92.71 -0.83 6.59 16 36 H 0.42 6.79 8.83 -92.71 -0.82 5.97 16 37 H 0.41 7.95 8.93 -92.71 -0.83 7.12 16 38 H 0.04 1.78 6.29 -2.39 -0.02 1.76 16 39 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -68.17 314.28 -3.37 -71.54 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -2.17 Total: 32.09 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 3.70 Total: 11.16 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -6.83 Total: -112.64 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.10 Total: -46.26 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -68.17 -3.37 -71.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693457424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.257 kcal (2) G-P(sol) polarization free energy of solvation -68.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds