Wall clock time and date at job start Mon Mar 30 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99447 * 2 1 4 4 H 1.48498 * 109.46730 * 269.99791 * 3 2 1 5 5 H 1.48492 * 109.47066 * 30.00144 * 3 2 1 6 6 H 1.48497 * 109.46761 * 150.00125 * 3 2 1 7 7 C 1.37876 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00279 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99847 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47049 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47188 * 179.97438 * 11 10 9 13 13 C 1.48557 * 111.00115 * 169.99923 * 12 11 10 14 14 C 1.54380 * 104.59890 * 200.96166 * 13 12 11 15 15 H 1.09000 * 110.32355 * 264.85629 * 14 13 12 16 16 C 1.50702 * 110.32678 * 142.74751 * 14 13 12 17 17 N 1.34778 * 119.99762 * 149.61165 * 16 14 13 18 18 O 1.21279 * 119.99789 * 329.60770 * 16 14 13 19 19 C 1.54261 * 105.05787 * 23.85212 * 14 13 12 20 20 H 1.08996 * 110.32650 * 241.10798 * 19 14 13 21 21 C 1.50705 * 110.32552 * 118.99856 * 19 14 13 22 22 N 1.34779 * 119.99721 * 92.04357 * 21 19 14 23 23 O 1.21276 * 119.99669 * 272.04675 * 21 19 14 24 24 C 1.48563 * 110.99887 * 54.58046 * 12 11 10 25 25 H 0.96995 * 120.00202 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46597 * 60.00163 * 9 7 2 27 27 H 1.09003 * 109.47195 * 300.00188 * 9 7 2 28 28 H 1.09001 * 109.47111 * 59.99868 * 10 9 7 29 29 H 1.09003 * 109.47359 * 300.00153 * 10 9 7 30 30 H 1.09001 * 109.47343 * 59.99923 * 11 10 9 31 31 H 1.09003 * 109.47094 * 300.00228 * 11 10 9 32 32 H 1.08999 * 110.41611 * 319.73950 * 13 12 11 33 33 H 1.09000 * 110.41477 * 82.18412 * 13 12 11 34 34 H 0.96995 * 120.00237 * 359.97438 * 17 16 14 35 35 H 0.97003 * 119.99488 * 180.02562 * 17 16 14 36 36 H 0.96998 * 120.00242 * 0.02562 * 22 21 19 37 37 H 0.96994 * 119.99884 * 180.02562 * 22 21 19 38 38 H 1.08996 * 110.41563 * 277.81699 * 24 12 11 39 39 H 1.08998 * 110.41068 * 40.26416 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0014 11 6 5.5517 -2.6362 0.0014 12 7 6.0415 -4.0211 0.0034 13 6 7.5067 -4.0680 -0.2373 14 6 7.7730 -5.5040 -0.7379 15 1 8.0753 -6.1439 0.0911 16 6 8.8350 -5.4971 -1.8071 17 7 9.6487 -6.5613 -1.9555 18 8 8.9573 -4.5341 -2.5340 19 6 6.4273 -5.9807 -1.3224 20 1 6.0674 -6.8549 -0.7800 21 6 6.5767 -6.2997 -2.7877 22 7 6.8772 -7.5546 -3.1769 23 8 6.4265 -5.4272 -3.6165 24 6 5.4612 -4.7927 -1.1258 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6794 0.8895 27 1 3.8746 -0.6806 -0.8905 28 1 3.6580 -3.1512 -0.8879 29 1 3.6587 -3.1492 0.8921 30 1 5.9150 -2.1215 0.8909 31 1 5.9150 -2.1232 -0.8891 32 1 7.7903 -3.3414 -0.9987 33 1 8.0503 -3.8814 0.6888 34 1 9.5510 -7.3313 -1.3739 35 1 10.3325 -6.5566 -2.6434 36 1 6.9970 -8.2524 -2.5139 37 1 6.9737 -7.7598 -4.1199 38 1 4.4647 -5.1516 -0.8687 39 1 5.4247 -4.1794 -2.0262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693459617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:39 Heat of formation + Delta-G solvation = -118.210939 kcal Electronic energy + Delta-G solvation = -21084.544864 eV Core-core repulsion = 17831.863352 eV Total energy + Delta-G solvation = -3252.681513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00713 -39.80230 -39.03615 -36.12911 -35.04146 -34.44943 -34.21781 -32.16866 -30.34994 -28.48246 -25.20658 -24.46451 -22.72777 -21.97831 -21.52854 -20.37691 -19.04832 -18.73803 -18.27923 -17.83347 -17.10592 -17.08700 -16.47781 -16.17148 -15.97372 -15.49178 -15.20887 -14.84753 -14.78932 -14.47975 -14.43470 -13.83158 -13.55498 -13.05025 -12.88327 -12.62383 -12.42208 -12.28947 -12.05221 -11.81879 -11.57153 -11.46108 -11.27126 -11.23118 -10.82830 -10.77344 -10.73127 -10.59674 -9.57624 -8.30349 -6.34156 1.34984 1.35944 1.48486 1.48674 1.54976 2.23723 2.35497 2.65641 3.04804 3.14126 3.26627 3.55147 3.89366 4.07741 4.15696 4.21603 4.25541 4.34610 4.36174 4.61410 4.67903 4.79552 4.85204 4.89826 4.92402 4.98563 5.08897 5.47082 5.55901 5.63816 5.74388 5.86025 5.88950 5.91505 6.28427 6.43557 6.48614 6.73137 7.30261 7.33213 7.37280 8.86549 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031898 B = 0.003946 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.592260 B = 7094.481264 C = 7403.359774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.245 1.245 7 C -0.532 4.532 8 H 0.033 0.967 9 C -0.012 4.012 10 C -0.089 4.089 11 C 0.051 3.949 12 N -0.495 5.495 13 C 0.035 3.965 14 C -0.091 4.091 15 H 0.164 0.836 16 C 0.509 3.491 17 N -0.825 5.825 18 O -0.582 6.582 19 C -0.094 4.094 20 H 0.159 0.841 21 C 0.507 3.493 22 N -0.826 5.826 23 O -0.582 6.582 24 C 0.036 3.964 25 H 0.267 0.733 26 H 0.026 0.974 27 H 0.008 0.992 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.019 0.981 32 H 0.031 0.969 33 H 0.112 0.888 34 H 0.422 0.578 35 H 0.406 0.594 36 H 0.422 0.578 37 H 0.406 0.594 38 H 0.091 0.909 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.091 -21.961 0.537 31.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.051 0.949 9 C -0.050 4.050 10 C -0.127 4.127 11 C -0.077 4.077 12 N -0.218 5.218 13 C -0.094 4.094 14 C -0.113 4.113 15 H 0.181 0.819 16 C 0.293 3.707 17 N -0.390 5.390 18 O -0.461 6.461 19 C -0.116 4.116 20 H 0.177 0.823 21 C 0.291 3.709 22 N -0.391 5.391 23 O -0.461 6.461 24 C -0.092 4.092 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.130 0.870 34 H 0.254 0.746 35 H 0.237 0.763 36 H 0.254 0.746 37 H 0.237 0.763 38 H 0.110 0.890 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 22.613 -20.744 0.332 30.689 hybrid contribution 0.078 0.726 -1.335 1.522 sum 22.691 -20.018 -1.003 30.276 Atomic orbital electron populations 1.70062 1.08220 1.28169 1.52733 1.26018 0.95658 1.03504 0.94099 0.85658 0.79671 0.78314 0.79026 1.19726 1.20456 1.16844 1.21479 0.92013 0.93185 1.50301 0.94908 1.19508 0.94086 0.95037 0.96328 1.21317 0.93284 0.97164 1.00943 1.22294 0.95539 0.89205 1.00673 1.65575 1.04338 1.11968 1.39959 1.23203 0.89659 0.95254 1.01243 1.22100 0.91787 0.99480 0.97957 0.81858 1.20748 0.82654 0.82791 0.84550 1.43606 1.36492 1.19191 1.39716 1.90809 1.71580 1.36514 1.47197 1.22092 0.95422 1.01713 0.92356 0.82342 1.20784 0.75511 0.83115 0.91471 1.43591 1.72858 1.09549 1.13077 1.90807 1.51134 1.48463 1.55694 1.23080 0.98933 0.94299 0.92929 0.92450 0.95572 0.97318 0.94059 0.91914 0.89292 0.96251 0.95044 0.86976 0.74582 0.76283 0.74599 0.76314 0.89045 0.95431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.82 13.96 21.45 0.30 -61.52 16 2 C 0.00 0.23 5.47 84.65 0.46 0.70 16 3 Si 0.95 46.54 27.47 68.60 1.88 48.43 16 4 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 7 C -0.53 -32.38 9.66 25.60 0.25 -32.13 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.09 -3.77 4.87 30.59 0.15 -3.62 16 11 C 0.05 1.79 5.06 86.30 0.44 2.23 16 12 N -0.50 -14.13 5.49 -881.50 -4.84 -18.97 16 13 C 0.03 0.84 5.99 86.45 0.52 1.35 16 14 C -0.09 -1.43 3.44 -10.64 -0.04 -1.47 16 15 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 16 C 0.51 9.77 5.30 87.66 0.46 10.24 16 17 N -0.83 -6.01 8.87 -173.53 -1.54 -7.55 16 18 O -0.58 -19.27 16.03 -0.31 0.00 -19.27 16 19 C -0.09 -1.68 3.44 -10.64 -0.04 -1.71 16 20 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 21 C 0.51 11.14 5.27 87.66 0.46 11.60 16 22 N -0.83 -8.02 8.87 -173.53 -1.54 -9.56 16 23 O -0.58 -21.10 16.03 -0.30 0.00 -21.10 16 24 C 0.04 1.05 4.60 86.45 0.40 1.45 16 25 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 26 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 27 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 28 H 0.04 1.82 6.84 -2.39 -0.02 1.80 16 29 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.02 0.74 7.88 -2.39 -0.02 0.72 16 32 H 0.03 1.01 6.58 -2.39 -0.02 0.99 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.42 -0.77 8.83 -92.71 -0.82 -1.59 16 35 H 0.41 2.93 8.93 -92.71 -0.83 2.10 16 36 H 0.42 0.11 8.83 -92.71 -0.82 -0.71 16 37 H 0.41 3.90 8.93 -92.71 -0.83 3.08 16 38 H 0.09 2.61 7.67 -2.39 -0.02 2.59 16 39 H 0.03 1.05 6.73 -2.39 -0.02 1.04 16 Total: -1.00 -93.15 317.60 -4.80 -97.95 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -2.24 Total: 3.43 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 3.19 Total: -11.83 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -7.62 Total: -97.60 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.01 Total: -40.37 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.88 Total: 48.43 kcal Total: -93.15 -4.80 -97.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693459617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.260 kcal (2) G-P(sol) polarization free energy of solvation -93.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds