Wall clock time and date at job start Mon Mar 30 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99722 * 2 1 4 4 H 1.48501 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46715 * 299.99525 * 3 2 1 6 6 H 1.48495 * 109.47160 * 59.99604 * 3 2 1 7 7 C 1.37876 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00448 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46840 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46968 * 179.97438 * 11 10 9 13 13 C 1.48558 * 111.00004 * 170.00194 * 12 11 10 14 14 C 1.54374 * 104.59646 * 159.04479 * 13 12 11 15 15 H 1.09000 * 110.32214 * 217.15080 * 14 13 12 16 16 C 1.50700 * 110.32781 * 95.04184 * 14 13 12 17 17 N 1.34777 * 119.99675 * 61.73179 * 16 14 13 18 18 O 1.21283 * 119.99803 * 241.45303 * 16 14 13 19 19 C 1.54266 * 105.06010 * 336.14263 * 14 13 12 20 20 H 1.09000 * 110.31815 * 118.89878 * 19 14 13 21 21 C 1.50694 * 110.32810 * 241.10807 * 19 14 13 22 22 N 1.34771 * 120.00141 * 180.02562 * 21 19 14 23 23 O 1.21285 * 119.99588 * 359.97438 * 21 19 14 24 24 C 1.48559 * 111.00259 * 285.42063 * 12 11 10 25 25 H 0.96993 * 120.00290 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47179 * 59.99306 * 9 7 2 27 27 H 1.09005 * 109.46914 * 300.00016 * 9 7 2 28 28 H 1.08996 * 109.47256 * 60.00119 * 10 9 7 29 29 H 1.08999 * 109.47220 * 299.99544 * 10 9 7 30 30 H 1.08996 * 109.46842 * 60.00180 * 11 10 9 31 31 H 1.08999 * 109.47098 * 299.99933 * 11 10 9 32 32 H 1.09001 * 110.41177 * 40.25925 * 13 12 11 33 33 H 1.09010 * 110.40929 * 277.82213 * 13 12 11 34 34 H 0.97004 * 119.99652 * 179.72868 * 17 16 14 35 35 H 0.97000 * 119.99894 * 359.71837 * 17 16 14 36 36 H 0.96996 * 119.99889 * 359.97438 * 22 21 19 37 37 H 0.97004 * 120.00119 * 180.02562 * 22 21 19 38 38 H 1.08994 * 110.40981 * 319.73944 * 24 12 11 39 39 H 1.08998 * 110.41237 * 82.17838 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7431 -7.3958 0.2419 14 6 2.7115 -8.4645 -0.3086 15 1 2.1542 -9.2711 -0.7849 16 6 3.5748 -9.0096 0.7999 17 7 3.0085 -9.6491 1.8425 18 8 4.7794 -8.8771 0.7514 19 6 3.5782 -7.7231 -1.3474 20 1 4.6279 -7.7534 -1.0553 21 6 3.3958 -8.3337 -2.7129 22 7 4.0661 -7.8337 -3.7697 23 8 2.6464 -9.2758 -2.8606 24 6 3.0604 -6.2687 -1.3369 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6042 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8535 -5.0450 -0.8886 31 1 0.8540 -5.0446 0.8914 32 1 0.7963 -7.4267 -0.2974 33 1 1.5786 -7.5455 1.3091 34 1 3.5645 -10.0034 2.5541 35 1 2.0451 -9.7549 1.8812 36 1 4.6657 -7.0805 -3.6514 37 1 3.9484 -8.2266 -4.6488 38 1 2.3199 -6.1232 -2.1233 39 1 3.8878 -5.5697 -1.4586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693459652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:42 Heat of formation + Delta-G solvation = -91.145944 kcal Electronic energy + Delta-G solvation = -20731.359244 eV Core-core repulsion = 17479.851358 eV Total energy + Delta-G solvation = -3251.507886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87354 -39.10834 -37.82294 -34.34811 -34.01924 -33.71500 -32.48578 -30.37725 -29.25777 -26.41813 -23.87941 -23.44719 -21.43421 -20.87155 -20.03921 -19.49445 -18.01426 -17.80335 -16.88819 -16.43469 -16.14730 -15.62955 -15.20465 -15.05061 -14.52536 -14.30915 -14.01753 -13.91049 -13.47413 -12.93308 -12.55793 -12.27975 -11.86292 -11.57857 -11.51088 -11.31711 -11.09114 -10.81791 -10.56744 -10.49144 -10.16704 -9.99743 -9.91428 -9.83658 -9.65791 -9.34390 -9.05806 -8.38641 -8.34432 -6.00012 -4.01938 2.42331 2.53978 3.15843 3.31181 3.38770 3.43234 3.49168 4.07060 4.19354 4.42396 4.47708 4.77948 4.88086 5.11879 5.25027 5.36075 5.38314 5.51469 5.52861 5.60567 5.79974 5.89662 5.93197 6.25441 6.54407 6.58864 6.62887 6.68803 6.89856 7.08910 7.14838 7.16850 7.23704 7.68206 7.82181 8.00382 8.03052 8.12804 8.43746 9.05536 9.62288 11.11499 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.003792 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.535504 B = 7381.461497 C = 7903.661724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.102 4.102 11 C 0.044 3.956 12 N -0.504 5.504 13 C 0.039 3.961 14 C -0.109 4.109 15 H 0.127 0.873 16 C 0.537 3.463 17 N -0.855 5.855 18 O -0.541 6.541 19 C -0.111 4.111 20 H 0.131 0.869 21 C 0.530 3.470 22 N -0.851 5.851 23 O -0.548 6.548 24 C 0.046 3.954 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.401 0.599 35 H 0.402 0.598 36 H 0.405 0.595 37 H 0.401 0.599 38 H 0.050 0.950 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.879 -18.968 -2.194 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.083 4.083 12 N -0.227 5.227 13 C -0.089 4.089 14 C -0.131 4.131 15 H 0.144 0.856 16 C 0.322 3.678 17 N -0.418 5.418 18 O -0.418 6.418 19 C -0.133 4.133 20 H 0.149 0.851 21 C 0.315 3.685 22 N -0.413 5.413 23 O -0.426 6.426 24 C -0.082 4.082 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.232 0.768 35 H 0.230 0.770 36 H 0.234 0.766 37 H 0.232 0.768 38 H 0.069 0.931 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.353 -19.130 -1.877 19.953 hybrid contribution -0.290 0.863 -0.622 1.103 sum 5.063 -18.267 -2.500 19.120 Atomic orbital electron populations 1.69975 1.06063 1.26449 1.51155 1.25027 0.94833 0.99260 0.95385 0.86550 0.80173 0.83828 0.77549 1.19701 1.21069 1.21025 1.21285 0.93100 0.90996 1.50173 0.92598 1.19086 0.94039 0.91459 0.97086 1.21592 0.99094 0.92380 1.00926 1.22521 0.93766 0.91344 1.00698 1.65527 1.28893 1.02311 1.26013 1.23131 0.95280 0.88984 1.01542 1.22025 0.96872 0.99930 0.94307 0.85584 1.20235 0.88436 0.76326 0.82814 1.43760 1.12011 1.60864 1.25133 1.90696 1.15156 1.57739 1.78179 1.22090 1.04412 0.95709 0.91079 0.85105 1.20443 0.78757 0.82530 0.86773 1.43796 1.48554 1.37861 1.11133 1.90693 1.37772 1.28543 1.85560 1.23086 1.00022 0.93423 0.91691 0.93103 0.96843 0.96600 0.92476 0.93518 0.94677 0.90891 0.92448 0.89521 0.76796 0.76997 0.76589 0.76791 0.93128 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.10 -2.06 5.27 -26.73 -0.14 -2.21 16 11 C 0.04 0.73 4.83 -3.82 -0.02 0.71 16 12 N -0.50 -7.20 5.34 -229.97 -1.23 -8.43 16 13 C 0.04 0.45 5.96 -2.19 -0.01 0.44 16 14 C -0.11 -1.24 3.03 -90.39 -0.27 -1.52 16 15 H 0.13 1.42 6.47 -51.93 -0.34 1.08 16 16 C 0.54 6.43 7.38 -10.98 -0.08 6.35 16 17 N -0.85 -6.68 8.57 31.22 0.27 -6.42 16 18 O -0.54 -8.48 16.09 5.55 0.09 -8.39 16 19 C -0.11 -1.30 3.04 -90.39 -0.27 -1.58 16 20 H 0.13 1.64 6.46 -51.93 -0.34 1.30 16 21 C 0.53 6.20 7.28 -10.99 -0.08 6.12 16 22 N -0.85 -6.80 8.85 31.22 0.28 -6.52 16 23 O -0.55 -8.12 16.09 5.55 0.09 -8.03 16 24 C 0.05 0.59 5.43 -2.18 -0.01 0.57 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.92 7.47 -51.93 -0.39 0.53 16 30 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 31 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 33 H 0.09 0.88 7.44 -51.92 -0.39 0.50 16 34 H 0.40 2.69 8.93 -40.82 -0.36 2.33 16 35 H 0.40 2.03 8.63 -40.82 -0.35 1.68 16 36 H 0.41 2.34 8.83 -40.82 -0.36 1.98 16 37 H 0.40 2.68 8.93 -40.82 -0.36 2.31 16 38 H 0.05 0.65 7.46 -51.93 -0.39 0.26 16 39 H 0.10 1.17 7.85 -51.93 -0.41 0.76 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -35.68 323.63 -7.09 -42.76 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.73 Total: 3.82 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.44 Total: -4.13 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.05 Total: -47.49 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.18 Total: -16.42 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.68 -7.09 -42.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693459652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.385 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds