Wall clock time and date at job start Mon Mar 30 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99722 * 2 1 4 4 H 1.48501 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46715 * 299.99525 * 3 2 1 6 6 H 1.48495 * 109.47160 * 59.99604 * 3 2 1 7 7 C 1.37876 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00448 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46840 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46968 * 179.97438 * 11 10 9 13 13 C 1.48558 * 111.00004 * 170.00194 * 12 11 10 14 14 C 1.54374 * 104.59646 * 159.04479 * 13 12 11 15 15 H 1.09000 * 110.32214 * 217.15080 * 14 13 12 16 16 C 1.50700 * 110.32781 * 95.04184 * 14 13 12 17 17 N 1.34777 * 119.99675 * 61.73179 * 16 14 13 18 18 O 1.21283 * 119.99803 * 241.45303 * 16 14 13 19 19 C 1.54266 * 105.06010 * 336.14263 * 14 13 12 20 20 H 1.09000 * 110.31815 * 118.89878 * 19 14 13 21 21 C 1.50694 * 110.32810 * 241.10807 * 19 14 13 22 22 N 1.34771 * 120.00141 * 180.02562 * 21 19 14 23 23 O 1.21285 * 119.99588 * 359.97438 * 21 19 14 24 24 C 1.48559 * 111.00259 * 285.42063 * 12 11 10 25 25 H 0.96993 * 120.00290 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47179 * 59.99306 * 9 7 2 27 27 H 1.09005 * 109.46914 * 300.00016 * 9 7 2 28 28 H 1.08996 * 109.47256 * 60.00119 * 10 9 7 29 29 H 1.08999 * 109.47220 * 299.99544 * 10 9 7 30 30 H 1.08996 * 109.46842 * 60.00180 * 11 10 9 31 31 H 1.08999 * 109.47098 * 299.99933 * 11 10 9 32 32 H 1.09001 * 110.41177 * 40.25925 * 13 12 11 33 33 H 1.09010 * 110.40929 * 277.82213 * 13 12 11 34 34 H 0.97004 * 119.99652 * 179.72868 * 17 16 14 35 35 H 0.97000 * 119.99894 * 359.71837 * 17 16 14 36 36 H 0.96996 * 119.99889 * 359.97438 * 22 21 19 37 37 H 0.97004 * 120.00119 * 180.02562 * 22 21 19 38 38 H 1.08994 * 110.40981 * 319.73944 * 24 12 11 39 39 H 1.08998 * 110.41237 * 82.17838 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7431 -7.3958 0.2419 14 6 2.7115 -8.4645 -0.3086 15 1 2.1542 -9.2711 -0.7849 16 6 3.5748 -9.0096 0.7999 17 7 3.0085 -9.6491 1.8425 18 8 4.7794 -8.8771 0.7514 19 6 3.5782 -7.7231 -1.3474 20 1 4.6279 -7.7534 -1.0553 21 6 3.3958 -8.3337 -2.7129 22 7 4.0661 -7.8337 -3.7697 23 8 2.6464 -9.2758 -2.8606 24 6 3.0604 -6.2687 -1.3369 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6042 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8535 -5.0450 -0.8886 31 1 0.8540 -5.0446 0.8914 32 1 0.7963 -7.4267 -0.2974 33 1 1.5786 -7.5455 1.3091 34 1 3.5645 -10.0034 2.5541 35 1 2.0451 -9.7549 1.8812 36 1 4.6657 -7.0805 -3.6514 37 1 3.9484 -8.2266 -4.6488 38 1 2.3199 -6.1232 -2.1233 39 1 3.8878 -5.5697 -1.4586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693459652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:41 Heat of formation + Delta-G solvation = -122.663260 kcal Electronic energy + Delta-G solvation = -20732.725938 eV Core-core repulsion = 17479.851358 eV Total energy + Delta-G solvation = -3252.874580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.82826 -40.04084 -38.91720 -36.06345 -34.87455 -34.64927 -34.14138 -31.91812 -30.20572 -28.16410 -25.17718 -24.71727 -22.81006 -21.79128 -21.56089 -20.44625 -18.89550 -18.71582 -18.35423 -17.67544 -17.21803 -16.70637 -16.41798 -16.25788 -16.16321 -15.47457 -15.15850 -14.99115 -14.64070 -14.33437 -14.01696 -13.83324 -13.26787 -13.06464 -12.76760 -12.64881 -12.48362 -12.33436 -12.20901 -12.07787 -11.41018 -11.34323 -11.16659 -11.05203 -10.95784 -10.71260 -10.63479 -10.53316 -9.49966 -8.18350 -6.28597 1.41224 1.42028 1.50411 1.55147 1.62085 2.34294 2.42689 2.69465 3.03551 3.15272 3.24341 3.47153 3.95887 4.04916 4.19084 4.20908 4.31805 4.32276 4.53544 4.59598 4.73512 4.77917 4.84324 4.89517 4.99347 5.10783 5.26904 5.55196 5.72026 5.83386 5.84742 5.89211 5.91955 5.98181 6.29612 6.35240 6.44587 6.88688 7.24498 7.34230 7.40701 8.93680 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.003792 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.535504 B = 7381.461497 C = 7903.661724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.087 4.087 11 C 0.057 3.943 12 N -0.516 5.516 13 C 0.041 3.959 14 C -0.104 4.104 15 H 0.131 0.869 16 C 0.533 3.467 17 N -0.834 5.834 18 O -0.584 6.584 19 C -0.105 4.105 20 H 0.125 0.875 21 C 0.529 3.471 22 N -0.832 5.832 23 O -0.582 6.582 24 C 0.047 3.953 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.410 0.590 35 H 0.417 0.583 36 H 0.418 0.582 37 H 0.411 0.589 38 H 0.051 0.949 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 -19.224 -2.245 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.125 4.125 11 C -0.071 4.071 12 N -0.239 5.239 13 C -0.087 4.087 14 C -0.126 4.126 15 H 0.149 0.851 16 C 0.318 3.682 17 N -0.398 5.398 18 O -0.464 6.464 19 C -0.127 4.127 20 H 0.143 0.857 21 C 0.314 3.686 22 N -0.395 5.395 23 O -0.463 6.463 24 C -0.082 4.082 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.241 0.759 35 H 0.248 0.752 36 H 0.249 0.751 37 H 0.243 0.757 38 H 0.069 0.931 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.053 -19.397 -1.926 20.411 hybrid contribution -0.524 0.908 -0.604 1.210 sum 5.529 -18.490 -2.530 19.464 Atomic orbital electron populations 1.70096 1.07736 1.27632 1.51960 1.25947 0.95732 1.03236 0.94822 0.85435 0.79130 0.78955 0.77753 1.18645 1.20355 1.20476 1.21723 0.93509 0.92423 1.50125 0.92344 1.18985 0.94425 0.93034 0.94839 1.21328 0.97907 0.92545 1.00740 1.22221 0.93532 0.90500 1.00824 1.65450 1.28617 1.02800 1.27074 1.23206 0.95355 0.87413 1.02715 1.21981 0.96641 0.99901 0.94114 0.85148 1.20363 0.87898 0.76420 0.83544 1.43604 1.13080 1.59063 1.24015 1.90680 1.16799 1.59696 1.79201 1.21985 1.04058 0.95146 0.91493 0.85727 1.20427 0.78691 0.82201 0.87296 1.43663 1.47494 1.37602 1.10791 1.90679 1.39477 1.30082 1.86027 1.23107 1.00013 0.94122 0.90935 0.92828 0.98970 0.98915 0.93152 0.93052 0.94686 0.90754 0.91589 0.87992 0.75863 0.75155 0.75133 0.75733 0.93090 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.02 1.29 4.97 29.84 0.15 1.44 16 10 C -0.09 -3.52 5.27 30.59 0.16 -3.35 16 11 C 0.06 1.85 4.83 86.31 0.42 2.27 16 12 N -0.52 -14.05 5.34 -881.49 -4.70 -18.76 16 13 C 0.04 0.87 5.96 86.45 0.52 1.39 16 14 C -0.10 -2.23 3.03 -10.64 -0.03 -2.26 16 15 H 0.13 2.74 6.47 -2.39 -0.02 2.73 16 16 C 0.53 12.05 7.38 87.66 0.65 12.70 16 17 N -0.83 -11.42 8.57 -173.53 -1.49 -12.90 16 18 O -0.58 -17.93 16.09 -3.04 -0.05 -17.98 16 19 C -0.10 -2.35 3.04 -10.64 -0.03 -2.38 16 20 H 0.13 3.03 6.46 -2.39 -0.02 3.02 16 21 C 0.53 11.76 7.28 87.66 0.64 12.40 16 22 N -0.83 -12.02 8.85 -173.54 -1.54 -13.56 16 23 O -0.58 -16.70 16.09 -3.05 -0.05 -16.75 16 24 C 0.05 1.12 5.43 86.45 0.47 1.59 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 2.00 7.47 -2.39 -0.02 1.98 16 30 H 0.03 1.13 7.77 -2.39 -0.02 1.11 16 31 H 0.07 2.37 8.08 -2.39 -0.02 2.35 16 32 H 0.07 1.33 8.00 -2.39 -0.02 1.31 16 33 H 0.10 1.84 7.44 -2.38 -0.02 1.82 16 34 H 0.41 4.72 8.93 -92.71 -0.83 3.89 16 35 H 0.42 3.18 8.63 -92.71 -0.80 2.38 16 36 H 0.42 4.10 8.83 -92.71 -0.82 3.28 16 37 H 0.41 4.80 8.93 -92.71 -0.83 3.97 16 38 H 0.05 1.23 7.46 -2.39 -0.02 1.21 16 39 H 0.10 2.28 7.85 -2.39 -0.02 2.26 16 Total: -1.00 -76.56 323.63 -4.05 -80.62 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -2.16 Total: 15.56 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 3.63 Total: -6.13 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -7.44 Total: -101.44 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.10 Total: -34.73 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -76.56 -4.05 -80.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693459652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.047 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds