Wall clock time and date at job start Mon Mar 30 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48496 * 109.46959 * 240.00002 * 3 2 1 5 5 H 1.48497 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46846 * 120.00227 * 3 2 1 7 7 C 1.37885 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99504 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47232 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47232 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.47115 * 304.99529 * 12 11 10 14 14 N 1.46901 * 109.47513 * 64.99692 * 12 11 10 15 15 C 1.50697 * 109.46957 * 184.99997 * 12 11 10 16 16 O 1.21287 * 120.00273 * 259.99482 * 15 12 11 17 17 N 1.34779 * 120.00311 * 79.99882 * 15 12 11 18 18 C 1.46500 * 120.00148 * 179.97438 * 17 15 12 19 19 H 1.08997 * 110.43079 * 36.09125 * 18 17 15 20 20 C 1.54625 * 110.59554 * 158.70511 * 18 17 15 21 21 C 1.54486 * 101.76456 * 143.53584 * 20 18 17 22 22 N 1.46768 * 105.47161 * 334.58243 * 21 20 18 23 23 C 1.34424 * 111.29731 * 17.01691 * 22 21 20 24 24 O 1.21284 * 124.93615 * 179.61279 * 23 22 21 25 25 H 0.97001 * 119.99802 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47009 * 59.99691 * 9 7 2 27 27 H 1.09004 * 109.47013 * 299.99769 * 9 7 2 28 28 H 1.08996 * 109.47672 * 59.99904 * 10 9 7 29 29 H 1.09007 * 109.47393 * 299.99782 * 10 9 7 30 30 H 1.08996 * 109.46908 * 59.99391 * 11 10 9 31 31 H 1.08998 * 109.46474 * 300.00255 * 11 10 9 32 32 H 1.00893 * 111.00213 * 296.04728 * 14 12 11 33 33 H 1.00906 * 110.99685 * 59.99928 * 14 12 11 34 34 H 0.96999 * 119.99638 * 359.97438 * 17 15 12 35 35 H 1.09003 * 110.97253 * 261.65155 * 20 18 17 36 36 H 1.08995 * 110.97337 * 25.37676 * 20 18 17 37 37 H 1.08994 * 110.24434 * 215.58391 * 21 20 18 38 38 H 1.08997 * 110.24641 * 93.58627 * 21 20 18 39 39 H 0.96989 * 124.35049 * 197.28073 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 1 3.1584 -6.0428 -0.8437 14 7 3.2375 -6.1426 1.2533 15 6 1.7248 -7.4515 -0.1263 16 8 1.5126 -8.1258 0.8593 17 7 1.2904 -7.8664 -1.3328 18 6 0.5624 -9.1319 -1.4539 19 1 -0.0760 -9.2883 -0.5843 20 6 -0.2769 -9.1545 -2.7524 21 6 -0.1501 -10.6325 -3.1836 22 7 1.1078 -11.1059 -2.5940 23 6 1.5281 -10.2849 -1.6161 24 8 2.5352 -10.4452 -0.9596 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 2.8718 -3.6045 0.8894 29 1 2.8718 -3.6044 -0.8906 30 1 0.8537 -5.0446 -0.8913 31 1 0.8532 -5.0451 0.8886 32 1 3.7993 -5.3080 1.3300 33 1 2.6253 -6.2408 2.0494 34 1 1.4599 -7.3270 -2.1210 35 1 -1.3160 -8.8951 -2.5499 36 1 0.1495 -8.4903 -3.5041 37 1 -0.1086 -10.7061 -4.2702 38 1 -0.9891 -11.2114 -2.7974 39 1 1.5777 -11.9060 -2.8765 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693906787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:46 Heat of formation + Delta-G solvation = -87.557002 kcal Electronic energy + Delta-G solvation = -20362.121983 eV Core-core repulsion = 17110.769725 eV Total energy + Delta-G solvation = -3251.352258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90478 -39.28265 -36.66056 -35.98745 -34.49537 -33.34676 -31.23126 -30.61469 -28.15381 -27.21384 -25.10000 -22.65447 -22.48544 -20.71633 -20.20456 -20.08301 -17.77915 -17.38277 -16.78774 -16.33878 -16.22122 -14.98933 -14.84686 -14.67838 -14.47775 -14.33913 -14.05425 -13.79393 -13.56631 -13.06772 -12.92986 -12.53131 -12.43389 -12.02369 -11.83274 -11.57252 -11.20529 -10.80808 -10.73200 -10.59329 -10.52980 -9.81740 -9.75492 -9.46705 -9.37511 -9.15124 -9.06874 -8.42914 -8.37182 -6.03864 -4.06741 2.24416 2.71634 2.94717 3.21598 3.30821 3.35426 3.37863 3.97828 4.06258 4.42390 4.44122 4.52431 4.77332 4.89165 5.04139 5.12569 5.26613 5.32060 5.33804 5.34188 5.48284 5.77672 5.97294 6.18975 6.26344 6.48414 6.57667 6.66357 6.73710 7.01974 7.19359 7.45877 7.61461 7.66957 7.74786 7.95336 7.99289 8.29782 8.37491 9.00239 9.57744 11.07317 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.003227 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.563285 B = 8675.643678 C = 9188.649100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.109 4.109 11 C -0.146 4.146 12 C 0.078 3.922 13 H 0.099 0.901 14 N -0.829 5.829 15 C 0.529 3.471 16 O -0.520 6.520 17 N -0.719 5.719 18 C 0.116 3.884 19 H 0.123 0.877 20 C -0.140 4.140 21 C 0.104 3.896 22 N -0.737 5.737 23 C 0.503 3.497 24 O -0.507 6.507 25 H 0.261 0.739 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.352 0.648 33 H 0.349 0.651 34 H 0.405 0.595 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 -19.876 -9.130 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.186 4.186 12 C -0.037 4.037 13 H 0.117 0.883 14 N -0.361 5.361 15 C 0.316 3.684 16 O -0.393 6.393 17 N -0.374 5.374 18 C 0.007 3.993 19 H 0.141 0.859 20 C -0.178 4.178 21 C -0.021 4.021 22 N -0.395 5.395 23 C 0.286 3.714 24 O -0.379 6.379 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.240 0.760 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.710 -20.873 -8.242 22.506 hybrid contribution 0.025 1.676 -0.459 1.738 sum -1.685 -19.197 -8.702 21.144 Atomic orbital electron populations 1.69953 1.06079 1.26758 1.50705 1.25031 0.94850 0.99293 0.95262 0.86654 0.79588 0.83089 0.78657 1.20219 1.21284 1.20213 1.21222 0.93004 0.91105 1.50815 0.92723 1.19070 0.93916 0.91262 0.97189 1.21659 0.99148 0.93483 1.00420 1.22418 0.98310 0.95116 1.02785 1.21405 0.95435 0.90987 0.95863 0.88310 1.58647 1.28238 1.46053 1.03190 1.20775 0.78104 0.87082 0.82475 1.90673 1.55272 1.56359 1.37044 1.45736 1.59415 1.21607 1.10671 1.21485 0.93033 0.84140 1.00650 0.85939 1.22944 1.02153 0.96575 0.96150 1.22043 0.86497 0.94351 0.99243 1.46194 1.26143 1.28779 1.38394 1.21364 0.86153 0.84623 0.79224 1.90807 1.25725 1.74698 1.46680 0.92921 0.96635 0.96707 0.93291 0.93040 0.91562 0.91709 0.83336 0.83726 0.75970 0.87979 0.88982 0.89810 0.90592 0.75131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.08 4.92 -26.73 -0.13 -2.21 16 11 C -0.15 -2.32 4.84 -26.73 -0.13 -2.45 16 12 C 0.08 1.14 3.21 -68.87 -0.22 0.92 16 13 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 14 N -0.83 -12.57 8.94 -5.66 -0.05 -12.62 16 15 C 0.53 8.08 7.03 -10.99 -0.08 8.00 16 16 O -0.52 -9.86 15.96 5.55 0.09 -9.77 16 17 N -0.72 -8.15 5.16 -53.82 -0.28 -8.43 16 18 C 0.12 1.16 3.22 -67.95 -0.22 0.94 16 19 H 0.12 1.35 7.66 -51.93 -0.40 0.95 16 20 C -0.14 -0.69 6.87 -25.10 -0.17 -0.86 16 21 C 0.10 0.41 7.78 -3.12 -0.02 0.39 16 22 N -0.74 -5.44 6.24 -59.20 -0.37 -5.81 16 23 C 0.50 6.08 8.06 -10.86 -0.09 6.00 16 24 O -0.51 -8.90 17.98 5.55 0.10 -8.80 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.35 4.93 7.55 -39.30 -0.30 4.63 16 33 H 0.35 5.41 8.58 -39.29 -0.34 5.08 16 34 H 0.40 3.48 8.39 -40.82 -0.34 3.14 16 35 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.37 7.81 -51.93 -0.41 -0.04 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.41 2.47 8.96 -40.82 -0.37 2.10 16 LS Contribution 329.05 15.07 4.96 4.96 Total: -1.00 -36.99 329.05 -7.29 -44.29 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.85 Total: 7.88 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.61 Total: -2.19 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.04 Total: -52.75 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.19 Total: -18.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.99 -7.29 -44.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693906787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.271 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds