Wall clock time and date at job start Mon Mar 30 2020 05:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48496 * 109.46959 * 240.00002 * 3 2 1 5 5 H 1.48497 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46846 * 120.00227 * 3 2 1 7 7 C 1.37885 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99504 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47232 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47232 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.47115 * 304.99529 * 12 11 10 14 14 N 1.46901 * 109.47513 * 64.99692 * 12 11 10 15 15 C 1.50697 * 109.46957 * 184.99997 * 12 11 10 16 16 O 1.21287 * 120.00273 * 259.99482 * 15 12 11 17 17 N 1.34779 * 120.00311 * 79.99882 * 15 12 11 18 18 C 1.46500 * 120.00148 * 179.97438 * 17 15 12 19 19 H 1.08997 * 110.43079 * 36.09125 * 18 17 15 20 20 C 1.54625 * 110.59554 * 158.70511 * 18 17 15 21 21 C 1.54486 * 101.76456 * 143.53584 * 20 18 17 22 22 N 1.46768 * 105.47161 * 334.58243 * 21 20 18 23 23 C 1.34424 * 111.29731 * 17.01691 * 22 21 20 24 24 O 1.21284 * 124.93615 * 179.61279 * 23 22 21 25 25 H 0.97001 * 119.99802 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47009 * 59.99691 * 9 7 2 27 27 H 1.09004 * 109.47013 * 299.99769 * 9 7 2 28 28 H 1.08996 * 109.47672 * 59.99904 * 10 9 7 29 29 H 1.09007 * 109.47393 * 299.99782 * 10 9 7 30 30 H 1.08996 * 109.46908 * 59.99391 * 11 10 9 31 31 H 1.08998 * 109.46474 * 300.00255 * 11 10 9 32 32 H 1.00893 * 111.00213 * 296.04728 * 14 12 11 33 33 H 1.00906 * 110.99685 * 59.99928 * 14 12 11 34 34 H 0.96999 * 119.99638 * 359.97438 * 17 15 12 35 35 H 1.09003 * 110.97253 * 261.65155 * 20 18 17 36 36 H 1.08995 * 110.97337 * 25.37676 * 20 18 17 37 37 H 1.08994 * 110.24434 * 215.58391 * 21 20 18 38 38 H 1.08997 * 110.24641 * 93.58627 * 21 20 18 39 39 H 0.96989 * 124.35049 * 197.28073 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 1 3.1584 -6.0428 -0.8437 14 7 3.2375 -6.1426 1.2533 15 6 1.7248 -7.4515 -0.1263 16 8 1.5126 -8.1258 0.8593 17 7 1.2904 -7.8664 -1.3328 18 6 0.5624 -9.1319 -1.4539 19 1 -0.0760 -9.2883 -0.5843 20 6 -0.2769 -9.1545 -2.7524 21 6 -0.1501 -10.6325 -3.1836 22 7 1.1078 -11.1059 -2.5940 23 6 1.5281 -10.2849 -1.6161 24 8 2.5352 -10.4452 -0.9596 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 2.8718 -3.6045 0.8894 29 1 2.8718 -3.6044 -0.8906 30 1 0.8537 -5.0446 -0.8913 31 1 0.8532 -5.0451 0.8886 32 1 3.7993 -5.3080 1.3300 33 1 2.6253 -6.2408 2.0494 34 1 1.4599 -7.3270 -2.1210 35 1 -1.3160 -8.8951 -2.5499 36 1 0.1495 -8.4903 -3.5041 37 1 -0.1086 -10.7061 -4.2702 38 1 -0.9891 -11.2114 -2.7974 39 1 1.5777 -11.9060 -2.8765 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693906787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:45 Heat of formation + Delta-G solvation = -119.707397 kcal Electronic energy + Delta-G solvation = -20363.516128 eV Core-core repulsion = 17110.769725 eV Total energy + Delta-G solvation = -3252.746404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77361 -40.37838 -37.57768 -37.35080 -35.47602 -35.25679 -32.98624 -31.32291 -29.47840 -28.28198 -26.58856 -24.27448 -23.02549 -21.98301 -21.46024 -21.15417 -18.69021 -18.45207 -18.36700 -17.59398 -17.14976 -16.52241 -16.12724 -16.07084 -15.81390 -15.37428 -14.86165 -14.73034 -14.69652 -14.32471 -14.22643 -13.64172 -13.59141 -13.48060 -13.01505 -12.87697 -12.53554 -12.44175 -12.33908 -12.10614 -11.55801 -11.47408 -11.41896 -11.26893 -10.79682 -10.53899 -10.10226 -10.05574 -9.65663 -8.19209 -6.30104 1.32846 1.41320 1.43695 1.51487 1.59255 2.09025 2.41838 2.47895 3.14217 3.38708 3.42442 3.66516 3.77275 4.00533 4.01750 4.06213 4.09069 4.41969 4.49443 4.59527 4.79240 4.79498 4.99116 5.03767 5.05405 5.19790 5.25275 5.33586 5.53472 5.75485 5.82771 5.86864 5.96807 6.05326 6.25717 6.45510 6.49796 6.87573 7.17265 7.23649 7.39426 8.92163 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.003227 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.563285 B = 8675.643678 C = 9188.649100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.096 4.096 11 C -0.132 4.132 12 C 0.086 3.914 13 H 0.119 0.881 14 N -0.836 5.836 15 C 0.524 3.476 16 O -0.565 6.565 17 N -0.705 5.705 18 C 0.108 3.892 19 H 0.108 0.892 20 C -0.127 4.127 21 C 0.101 3.899 22 N -0.721 5.721 23 C 0.492 3.508 24 O -0.575 6.575 25 H 0.263 0.737 26 H -0.004 1.004 27 H -0.015 1.015 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.357 0.643 33 H 0.345 0.655 34 H 0.420 0.580 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 -19.971 -11.290 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.171 4.171 12 C -0.030 4.030 13 H 0.137 0.863 14 N -0.369 5.369 15 C 0.311 3.689 16 O -0.442 6.442 17 N -0.360 5.360 18 C -0.001 4.001 19 H 0.125 0.875 20 C -0.165 4.165 21 C -0.022 4.022 22 N -0.376 5.376 23 C 0.276 3.724 24 O -0.454 6.454 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.003 0.997 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.258 0.742 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.704 -20.988 -10.497 23.529 hybrid contribution -0.056 1.639 0.155 1.647 sum -1.760 -19.349 -10.343 22.011 Atomic orbital electron populations 1.70087 1.07780 1.27774 1.51754 1.25967 0.95734 1.03313 0.94822 0.85543 0.78295 0.78282 0.79197 1.18956 1.21025 1.19423 1.21716 0.93641 0.92444 1.50396 0.92026 1.18989 0.94435 0.93056 0.94753 1.21444 0.98005 0.92707 1.01195 1.22217 0.98172 0.94018 1.02739 1.21375 0.95196 0.90123 0.96259 0.86348 1.58662 1.28400 1.46395 1.03396 1.20911 0.77914 0.87049 0.83062 1.90652 1.57095 1.57676 1.38744 1.45632 1.58221 1.22090 1.10016 1.21701 0.92802 0.82693 1.02934 0.87451 1.23045 1.02355 0.97694 0.93413 1.22400 0.85169 0.93658 1.01019 1.46231 1.26809 1.28002 1.36603 1.21771 0.85574 0.85704 0.79356 1.90765 1.28706 1.76463 1.49434 0.92828 0.98582 0.99672 0.92924 0.91782 0.90244 0.93226 0.82723 0.84145 0.74216 0.85867 0.87338 0.86587 0.88675 0.74320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 3 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.54 -30.18 9.11 25.60 0.23 -29.94 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.58 4.92 30.59 0.15 -3.43 16 11 C -0.13 -4.08 4.84 30.59 0.15 -3.93 16 12 C 0.09 2.42 3.21 44.17 0.14 2.56 16 13 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 14 N -0.84 -25.20 8.94 -171.81 -1.54 -26.73 16 15 C 0.52 15.94 7.03 87.66 0.62 16.56 16 16 O -0.56 -22.04 15.96 -3.05 -0.05 -22.09 16 17 N -0.71 -15.24 5.16 -442.58 -2.28 -17.52 16 18 C 0.11 2.03 3.22 44.98 0.14 2.17 16 19 H 0.11 2.37 7.66 -2.39 -0.02 2.35 16 20 C -0.13 -0.82 6.87 31.65 0.22 -0.60 16 21 C 0.10 0.42 7.78 86.83 0.68 1.09 16 22 N -0.72 -9.26 6.24 -459.79 -2.87 -12.13 16 23 C 0.49 11.73 8.06 87.89 0.71 12.44 16 24 O -0.58 -20.96 17.98 -3.04 -0.05 -21.02 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 28 H 0.05 1.92 6.87 -2.39 -0.02 1.90 16 29 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.36 9.78 7.55 -89.70 -0.68 9.10 16 33 H 0.35 10.91 8.58 -89.69 -0.77 10.14 16 34 H 0.42 6.30 8.39 -92.71 -0.78 5.52 16 35 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.11 0.40 7.81 -2.39 -0.02 0.39 16 37 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.42 4.32 8.96 -92.72 -0.83 3.49 16 Total: -1.00 -83.53 329.05 -2.79 -86.32 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -1.96 Total: 24.69 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 3.65 Total: -1.26 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -6.40 Total: -112.22 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.10 Total: -43.11 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -83.53 -2.79 -86.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693906787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.388 kcal (2) G-P(sol) polarization free energy of solvation -83.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds