Wall clock time and date at job start Mon Mar 30 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47303 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47090 * 55.00121 * 12 11 10 14 14 N 1.46904 * 109.46953 * 295.00338 * 12 11 10 15 15 C 1.50692 * 109.47182 * 175.00582 * 12 11 10 16 16 O 1.21280 * 120.00575 * 100.00099 * 15 12 11 17 17 N 1.34784 * 120.00146 * 279.99921 * 15 12 11 18 18 C 1.46491 * 120.00497 * 180.02562 * 17 15 12 19 19 H 1.09003 * 110.43511 * 325.69947 * 18 17 15 20 20 C 1.54627 * 110.49022 * 203.16005 * 18 17 15 21 21 C 1.54470 * 101.76793 * 216.52214 * 20 18 17 22 22 N 1.46771 * 105.47565 * 25.41478 * 21 20 18 23 23 C 1.34655 * 111.32979 * 342.87160 * 22 21 20 24 24 O 1.21281 * 125.06962 * 180.51197 * 23 22 21 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 1.09000 * 109.47250 * 300.00684 * 11 10 9 31 31 H 1.09007 * 109.46897 * 59.99806 * 11 10 9 32 32 H 1.00894 * 110.99938 * 176.04733 * 14 12 11 33 33 H 1.00903 * 110.99881 * 299.99972 * 14 12 11 34 34 H 0.97007 * 119.99244 * 0.02562 * 17 15 12 35 35 H 1.09009 * 110.96525 * 334.64287 * 20 18 17 36 36 H 1.09005 * 110.97210 * 98.40140 * 20 18 17 37 37 H 1.09008 * 110.24775 * 144.40889 * 21 20 18 38 38 H 1.08995 * 110.25104 * 266.41349 * 21 20 18 39 39 H 0.96996 * 124.34953 * 162.98321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4806 -4.9870 0.0257 12 6 2.4748 -6.1499 0.0324 13 1 3.1589 -6.0382 0.8736 14 7 3.2380 -6.1487 -1.2229 15 6 1.7255 -7.4507 0.1634 16 8 1.5133 -8.1300 -0.8187 17 7 1.2911 -7.8594 1.3720 18 6 0.5631 -9.1243 1.4995 19 1 -0.0512 -9.3006 0.6165 20 6 -0.3114 -9.1193 2.7748 21 6 -0.1930 -10.5864 3.2437 22 7 1.0818 -11.0696 2.7000 23 6 1.5269 -10.2709 1.7115 24 8 2.5503 -10.4432 1.0838 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.8541 -5.0399 0.9162 31 1 0.8536 -5.0496 -0.8638 32 1 3.9457 -6.8678 -1.2164 33 1 2.6258 -6.2510 -2.0184 34 1 1.4605 -7.3160 2.1575 35 1 0.0932 -8.4369 3.5224 36 1 -1.3452 -8.8677 2.5379 37 1 -0.1810 -10.6346 4.3326 38 1 -1.0196 -11.1767 2.8484 39 1 1.5438 -11.8636 3.0114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693906789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:48 Heat of formation + Delta-G solvation = -93.139000 kcal Electronic energy + Delta-G solvation = -20389.979778 eV Core-core repulsion = 17138.385466 eV Total energy + Delta-G solvation = -3251.594312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02353 -39.47906 -36.78425 -35.81927 -34.66736 -33.59874 -31.28648 -30.69847 -28.13527 -27.15756 -24.65245 -22.61307 -22.55345 -20.80466 -20.34731 -20.17236 -17.89524 -17.40078 -16.84347 -16.69324 -16.40899 -15.71866 -15.11551 -14.60489 -14.23543 -14.15347 -13.96217 -13.68514 -13.63034 -13.14047 -12.99677 -12.86892 -12.61613 -11.96280 -11.67667 -11.28123 -11.01370 -10.91002 -10.69287 -10.65746 -10.22575 -10.07373 -9.72951 -9.57543 -9.53819 -9.21296 -8.68049 -8.40155 -8.25205 -6.29368 -3.97254 2.11880 2.51326 2.81725 3.14003 3.47595 3.52058 3.67852 3.89412 3.95872 4.35720 4.43095 4.55264 4.61078 4.77354 4.96862 5.03977 5.15920 5.26104 5.35127 5.38958 5.47976 5.85300 6.02432 6.06918 6.34526 6.37088 6.54454 6.70865 6.86779 7.05879 7.10058 7.29965 7.50602 7.54855 7.65828 7.86060 8.07764 8.31973 8.55498 8.96875 9.74813 11.11414 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.003240 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.750116 B = 8638.679283 C = 9153.683848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 1.071 2.929 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.598 4.598 8 H 0.049 0.951 9 C 0.006 3.994 10 C -0.093 4.093 11 C -0.104 4.104 12 C 0.081 3.919 13 H 0.101 0.899 14 N -0.811 5.811 15 C 0.488 3.512 16 O -0.536 6.536 17 N -0.715 5.715 18 C 0.112 3.888 19 H 0.124 0.876 20 C -0.140 4.140 21 C 0.104 3.896 22 N -0.736 5.736 23 C 0.505 3.495 24 O -0.511 6.511 25 H 0.268 0.732 26 H 0.003 0.997 27 H 0.005 0.995 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.341 0.659 33 H 0.350 0.650 34 H 0.406 0.594 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 -22.102 9.219 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.191 4.191 3 Si 0.899 3.101 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.636 4.636 8 H 0.067 0.933 9 C -0.031 4.031 10 C -0.131 4.131 11 C -0.142 4.142 12 C -0.035 4.035 13 H 0.119 0.881 14 N -0.339 5.339 15 C 0.274 3.726 16 O -0.412 6.412 17 N -0.369 5.369 18 C 0.002 3.998 19 H 0.141 0.859 20 C -0.178 4.178 21 C -0.021 4.021 22 N -0.394 5.394 23 C 0.289 3.711 24 O -0.384 6.384 25 H 0.078 0.922 26 H 0.021 0.979 27 H 0.023 0.977 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.242 0.758 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.107 -20.163 8.274 21.823 hybrid contribution -0.051 -2.965 0.577 3.021 sum -1.158 -23.128 8.851 24.791 Atomic orbital electron populations 1.70756 1.06899 1.30510 1.47243 1.25845 0.96585 1.02737 0.93952 0.83523 0.74735 0.75155 0.76650 1.21556 1.21459 1.21086 1.22117 0.94383 0.92087 1.55009 0.93269 1.19254 0.94740 0.93480 0.95603 1.21409 0.98492 0.91736 1.01472 1.21669 0.96576 0.94119 1.01870 1.21736 0.95747 0.90501 0.95560 0.88132 1.59056 1.17307 1.54363 1.03185 1.22612 0.78656 0.88853 0.82523 1.90684 1.56331 1.56761 1.37378 1.45920 1.58736 1.21376 1.10918 1.21545 0.92955 0.84401 1.00884 0.85887 1.22951 1.01914 0.96728 0.96237 1.22056 0.85980 0.94324 0.99787 1.46242 1.24867 1.29940 1.38368 1.21393 0.86200 0.84457 0.79071 1.90778 1.24935 1.74039 1.48694 0.92181 0.97905 0.97679 0.91609 0.93495 0.91945 0.91931 0.84702 0.83605 0.75810 0.88948 0.87945 0.89691 0.90539 0.75071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.54 13.65 55.43 0.76 -27.78 16 2 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 3 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.60 -17.39 9.11 -34.44 -0.31 -17.70 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.01 0.16 4.28 -27.88 -0.12 0.04 16 10 C -0.09 -1.93 5.04 -26.73 -0.13 -2.06 16 11 C -0.10 -1.70 4.84 -26.73 -0.13 -1.83 16 12 C 0.08 1.14 3.15 -68.87 -0.22 0.93 16 13 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 14 N -0.81 -11.93 8.44 -5.66 -0.05 -11.97 16 15 C 0.49 6.97 7.07 -10.99 -0.08 6.89 16 16 O -0.54 -9.45 15.93 5.56 0.09 -9.36 16 17 N -0.72 -7.69 5.14 -53.82 -0.28 -7.96 16 18 C 0.11 1.06 3.24 -67.95 -0.22 0.84 16 19 H 0.12 1.32 7.61 -51.93 -0.40 0.92 16 20 C -0.14 -0.66 6.87 -25.10 -0.17 -0.83 16 21 C 0.10 0.38 7.78 -3.12 -0.02 0.35 16 22 N -0.74 -5.08 6.25 -59.14 -0.37 -5.45 16 23 C 0.51 5.77 8.09 -10.76 -0.09 5.69 16 24 O -0.51 -8.46 18.02 5.56 0.10 -8.36 16 25 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 26 H 0.00 0.07 8.01 -51.92 -0.42 -0.34 16 27 H 0.00 0.13 8.00 -51.93 -0.42 -0.28 16 28 H 0.07 1.43 7.75 -51.93 -0.40 1.02 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.34 4.61 9.06 -39.30 -0.36 4.25 16 33 H 0.35 5.28 8.58 -39.29 -0.34 4.94 16 34 H 0.41 3.34 8.40 -40.82 -0.34 2.99 16 35 H 0.09 0.35 7.81 -51.92 -0.41 -0.05 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.15 8.14 -51.92 -0.42 -0.27 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.41 2.27 8.96 -40.82 -0.37 1.91 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -37.86 329.75 -7.35 -45.21 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.89 Total: 7.44 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.59 Total: -7.44 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.06 Total: -53.17 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.19 Total: -17.73 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -37.86 -7.35 -45.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693906789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.928 kcal (2) G-P(sol) polarization free energy of solvation -37.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds