Wall clock time and date at job start Mon Mar 30 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47303 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47090 * 55.00121 * 12 11 10 14 14 N 1.46904 * 109.46953 * 295.00338 * 12 11 10 15 15 C 1.50692 * 109.47182 * 175.00582 * 12 11 10 16 16 O 1.21280 * 120.00575 * 100.00099 * 15 12 11 17 17 N 1.34784 * 120.00146 * 279.99921 * 15 12 11 18 18 C 1.46491 * 120.00497 * 180.02562 * 17 15 12 19 19 H 1.09003 * 110.43511 * 325.69947 * 18 17 15 20 20 C 1.54627 * 110.49022 * 203.16005 * 18 17 15 21 21 C 1.54470 * 101.76793 * 216.52214 * 20 18 17 22 22 N 1.46771 * 105.47565 * 25.41478 * 21 20 18 23 23 C 1.34655 * 111.32979 * 342.87160 * 22 21 20 24 24 O 1.21281 * 125.06962 * 180.51197 * 23 22 21 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 1.09000 * 109.47250 * 300.00684 * 11 10 9 31 31 H 1.09007 * 109.46897 * 59.99806 * 11 10 9 32 32 H 1.00894 * 110.99938 * 176.04733 * 14 12 11 33 33 H 1.00903 * 110.99881 * 299.99972 * 14 12 11 34 34 H 0.97007 * 119.99244 * 0.02562 * 17 15 12 35 35 H 1.09009 * 110.96525 * 334.64287 * 20 18 17 36 36 H 1.09005 * 110.97210 * 98.40140 * 20 18 17 37 37 H 1.09008 * 110.24775 * 144.40889 * 21 20 18 38 38 H 1.08995 * 110.25104 * 266.41349 * 21 20 18 39 39 H 0.96996 * 124.34953 * 162.98321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4806 -4.9870 0.0257 12 6 2.4748 -6.1499 0.0324 13 1 3.1589 -6.0382 0.8736 14 7 3.2380 -6.1487 -1.2229 15 6 1.7255 -7.4507 0.1634 16 8 1.5133 -8.1300 -0.8187 17 7 1.2911 -7.8594 1.3720 18 6 0.5631 -9.1243 1.4995 19 1 -0.0512 -9.3006 0.6165 20 6 -0.3114 -9.1193 2.7748 21 6 -0.1930 -10.5864 3.2437 22 7 1.0818 -11.0696 2.7000 23 6 1.5269 -10.2709 1.7115 24 8 2.5503 -10.4432 1.0838 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.8541 -5.0399 0.9162 31 1 0.8536 -5.0496 -0.8638 32 1 3.9457 -6.8678 -1.2164 33 1 2.6258 -6.2510 -2.0184 34 1 1.4605 -7.3160 2.1575 35 1 0.0932 -8.4369 3.5224 36 1 -1.3452 -8.8677 2.5379 37 1 -0.1810 -10.6346 4.3326 38 1 -1.0196 -11.1767 2.8484 39 1 1.5438 -11.8636 3.0114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693906789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:48 Heat of formation + Delta-G solvation = -125.916821 kcal Electronic energy + Delta-G solvation = -20391.401131 eV Core-core repulsion = 17138.385466 eV Total energy + Delta-G solvation = -3253.015665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85951 -40.51181 -37.62617 -37.28299 -35.59954 -35.50532 -33.05234 -31.36528 -29.42526 -28.21908 -26.26768 -24.31485 -23.08105 -22.14225 -21.51873 -21.26556 -18.91658 -18.63666 -18.33729 -17.63579 -17.47171 -16.80802 -16.18669 -15.68090 -15.57886 -15.46100 -15.10051 -14.86866 -14.78909 -14.60890 -14.41445 -13.73788 -13.56279 -13.08736 -13.00544 -12.63875 -12.53402 -12.40027 -12.17363 -11.92576 -11.66071 -11.63707 -11.51700 -11.28169 -10.61157 -10.49679 -10.16958 -10.13272 -9.77968 -8.64642 -6.34171 1.25141 1.43348 1.54528 1.64100 1.82055 2.03683 2.43029 2.59873 3.19869 3.32270 3.34743 3.45295 3.72127 3.93881 3.96378 4.00869 4.07120 4.41491 4.43719 4.57447 4.74871 4.83055 4.93277 4.99042 4.99420 5.07951 5.15062 5.24981 5.57524 5.67758 5.75696 5.89738 5.94929 6.08586 6.24960 6.31191 6.38664 6.64505 7.04127 7.13518 7.47316 8.76434 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.003240 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.750116 B = 8638.679283 C = 9153.683848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.042 4.042 3 Si 1.119 2.881 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.617 4.617 8 H 0.049 0.951 9 C 0.006 3.994 10 C -0.079 4.079 11 C -0.092 4.092 12 C 0.088 3.912 13 H 0.120 0.880 14 N -0.818 5.818 15 C 0.488 3.512 16 O -0.575 6.575 17 N -0.702 5.702 18 C 0.104 3.896 19 H 0.107 0.893 20 C -0.128 4.128 21 C 0.101 3.899 22 N -0.720 5.720 23 C 0.494 3.506 24 O -0.576 6.576 25 H 0.255 0.745 26 H -0.007 1.007 27 H -0.018 1.018 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.347 0.653 33 H 0.346 0.654 34 H 0.420 0.580 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 -22.429 11.410 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.238 4.238 3 Si 0.940 3.060 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.655 4.655 8 H 0.067 0.933 9 C -0.031 4.031 10 C -0.117 4.117 11 C -0.130 4.130 12 C -0.028 4.028 13 H 0.138 0.862 14 N -0.347 5.347 15 C 0.273 3.727 16 O -0.454 6.454 17 N -0.356 5.356 18 C -0.005 4.005 19 H 0.125 0.875 20 C -0.166 4.166 21 C -0.022 4.022 22 N -0.376 5.376 23 C 0.278 3.722 24 O -0.454 6.454 25 H 0.065 0.935 26 H 0.012 0.988 27 H 0.000 1.000 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.258 0.742 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.275 -20.533 10.559 23.123 hybrid contribution -0.070 -2.939 -0.051 2.940 sum -1.345 -23.472 10.508 25.752 Atomic orbital electron populations 1.70891 1.07909 1.29842 1.49192 1.27428 0.96670 1.06874 0.92878 0.82912 0.74108 0.71054 0.77889 1.19490 1.19649 1.20921 1.22571 0.94703 0.93681 1.54552 0.93313 1.19221 0.95221 0.94701 0.93912 1.21179 0.97368 0.91936 1.01202 1.21469 0.96586 0.92769 1.02195 1.21630 0.95456 0.89706 0.96029 0.86241 1.59076 1.17555 1.54730 1.03343 1.22497 0.78474 0.88619 0.83087 1.90669 1.57892 1.57889 1.38912 1.45808 1.57577 1.21859 1.10316 1.21735 0.92858 0.83043 1.02867 0.87491 1.23049 1.01918 0.97894 0.93754 1.22398 0.84637 0.93606 1.01597 1.46282 1.25553 1.29203 1.36569 1.21765 0.85657 0.85444 0.79301 1.90739 1.27719 1.75730 1.51241 0.93515 0.98845 0.99996 0.92865 0.92648 0.90035 0.93306 0.84001 0.84070 0.74158 0.87371 0.85998 0.86552 0.88693 0.74249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.08 13.65 21.45 0.29 -58.78 16 2 C -0.04 -2.46 5.46 84.65 0.46 -1.99 16 3 Si 1.12 51.10 29.90 68.60 2.05 53.15 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.62 -36.01 9.11 25.60 0.23 -35.77 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.01 0.34 4.28 29.85 0.13 0.47 16 10 C -0.08 -3.23 5.04 30.59 0.15 -3.08 16 11 C -0.09 -2.95 4.84 30.59 0.15 -2.80 16 12 C 0.09 2.41 3.15 44.17 0.14 2.55 16 13 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 14 N -0.82 -24.04 8.44 -171.81 -1.45 -25.49 16 15 C 0.49 13.75 7.07 87.65 0.62 14.37 16 16 O -0.57 -20.70 15.93 -3.03 -0.05 -20.75 16 17 N -0.70 -14.17 5.14 -442.59 -2.28 -16.45 16 18 C 0.10 1.84 3.24 44.99 0.15 1.99 16 19 H 0.11 2.27 7.61 -2.39 -0.02 2.25 16 20 C -0.13 -0.76 6.87 31.65 0.22 -0.54 16 21 C 0.10 0.35 7.78 86.83 0.68 1.03 16 22 N -0.72 -8.47 6.25 -459.49 -2.87 -11.34 16 23 C 0.49 11.01 8.09 87.86 0.71 11.72 16 24 O -0.58 -19.60 18.02 -3.03 -0.05 -19.65 16 25 H 0.26 16.18 7.22 -92.70 -0.67 15.51 16 26 H -0.01 -0.36 8.01 -2.38 -0.02 -0.38 16 27 H -0.02 -1.03 8.00 -2.39 -0.02 -1.05 16 28 H 0.05 2.30 7.75 -2.39 -0.02 2.28 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 32 H 0.35 9.40 9.06 -89.70 -0.81 8.58 16 33 H 0.35 10.66 8.58 -89.69 -0.77 9.89 16 34 H 0.42 5.91 8.40 -92.70 -0.78 5.13 16 35 H 0.11 0.36 7.81 -2.38 -0.02 0.34 16 36 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.12 -0.19 8.14 -2.38 -0.02 -0.21 16 38 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.42 3.86 8.96 -92.71 -0.83 3.03 16 Total: -1.00 -84.87 329.75 -2.71 -87.59 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -1.99 Total: 23.78 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 3.63 Total: -12.06 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -6.30 Total: -112.05 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.10 Total: -40.40 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Total: -84.87 -2.71 -87.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693906789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.329 kcal (2) G-P(sol) polarization free energy of solvation -84.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds