Wall clock time and date at job start Mon Mar 30 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48541 * 110.99805 * 2 1 4 4 C 1.54938 * 103.22605 * 200.28158 * 3 2 1 5 5 H 1.08999 * 110.72392 * 278.87928 * 4 3 2 6 6 N 1.46501 * 110.72527 * 155.77041 * 4 3 2 7 7 C 1.34779 * 119.99726 * 86.45394 * 6 4 3 8 8 O 1.21441 * 120.00302 * 359.97438 * 7 6 4 9 9 C 1.48830 * 119.99991 * 180.02562 * 7 6 4 10 10 O 1.21504 * 119.99845 * 359.97438 * 9 7 6 11 11 N 1.34768 * 120.00181 * 179.97438 * 9 7 6 12 12 C 1.36127 * 120.00332 * 179.97438 * 11 9 7 13 13 H 1.08002 * 119.99657 * 0.02562 * 12 11 9 14 14 C 1.39585 * 119.99997 * 180.02562 * 12 11 9 15 15 N 1.31014 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99726 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47113 * 89.99631 * 16 14 12 18 18 H 1.48499 * 109.47288 * 210.00153 * 16 14 12 19 19 H 1.48502 * 109.46984 * 329.99799 * 16 14 12 20 20 C 1.54595 * 102.92210 * 37.41378 * 4 3 2 21 21 C 1.47902 * 110.99844 * 242.60590 * 2 1 3 22 22 C 1.53000 * 109.91609 * 265.19345 * 21 2 1 23 23 C 1.52999 * 109.92077 * 26.48952 * 21 2 1 24 24 H 1.09002 * 109.47401 * 59.87334 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.87347 * 1 2 3 26 26 H 1.09004 * 109.46970 * 179.87480 * 1 2 3 27 27 H 1.09005 * 110.66282 * 318.71281 * 3 2 1 28 28 H 1.08998 * 110.66710 * 81.84805 * 3 2 1 29 29 H 0.96993 * 120.00276 * 266.45394 * 6 4 3 30 30 H 0.97002 * 120.00203 * 0.02562 * 11 9 7 31 31 H 0.96999 * 119.99790 * 180.02562 * 15 14 12 32 32 H 1.09000 * 110.30970 * 96.95903 * 20 4 3 33 33 H 1.08998 * 110.31044 * 219.02980 * 20 4 3 34 34 H 1.08994 * 109.47260 * 61.45533 * 22 21 2 35 35 H 1.09001 * 109.47012 * 181.45618 * 22 21 2 36 36 H 1.09004 * 109.47141 * 301.45223 * 22 21 2 37 37 H 1.09006 * 109.46905 * 58.54345 * 23 21 2 38 38 H 1.08999 * 109.47549 * 178.54779 * 23 21 2 39 39 H 1.09002 * 109.47020 * 298.55202 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3868 0.0000 4 6 3.4491 1.2107 -0.5228 5 1 4.1122 0.8867 0.2793 6 7 3.9371 2.4534 -1.1261 7 6 4.5134 3.3962 -0.3544 8 8 4.6276 3.2159 0.8411 9 6 5.0086 4.6588 -0.9671 10 8 4.8939 4.8395 -2.1632 11 7 5.5844 5.6018 -0.1954 12 6 6.0379 6.7565 -0.7559 13 1 5.9359 6.9170 -1.8191 14 6 6.6346 7.7329 0.0434 15 7 6.7588 7.5379 1.3330 16 14 7.2562 9.3177 -0.7257 17 1 6.1700 10.3302 -0.7196 18 1 8.4121 9.8268 0.0553 19 1 7.6809 9.0557 -2.1245 20 6 3.2982 0.1055 -1.5931 21 6 1.9990 -0.6353 -1.2260 22 6 2.2983 -2.1120 -0.9601 23 6 0.9839 -0.5019 -2.3629 24 1 -0.3634 0.5158 -0.8888 25 1 -0.3633 0.5119 0.8911 26 1 -0.3633 -1.0277 -0.0022 27 1 1.4236 2.0205 -0.6730 28 1 2.0041 1.7977 1.0095 29 1 3.8456 2.5976 -2.0809 30 1 5.6763 5.4575 0.7594 31 1 7.1731 8.2167 1.8884 32 1 3.2135 0.5487 -2.5853 33 1 4.1478 -0.5764 -1.5553 34 1 1.3773 -2.6255 -0.6845 35 1 2.7124 -2.5666 -1.8601 36 1 3.0186 -2.1960 -0.1463 37 1 0.7745 0.5530 -2.5410 38 1 1.3922 -0.9494 -3.2690 39 1 0.0616 -1.0139 -2.0884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694198411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:57 Heat of formation + Delta-G solvation = -66.168204 kcal Electronic energy + Delta-G solvation = -20888.370711 eV Core-core repulsion = 17637.945941 eV Total energy + Delta-G solvation = -3250.424770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31554 -39.10520 -37.15052 -34.78300 -33.99810 -32.52055 -31.44701 -30.48335 -27.60013 -26.06695 -25.84437 -24.72863 -22.95807 -20.83526 -19.63483 -18.90484 -18.34591 -17.06092 -16.30844 -15.77450 -15.30750 -14.93988 -14.76830 -14.58188 -14.02616 -13.91751 -13.84382 -13.32885 -13.11311 -12.80623 -12.71136 -12.54041 -11.95233 -11.93156 -11.77857 -11.60472 -11.35552 -11.30535 -11.20061 -11.01001 -10.65367 -10.54546 -10.43132 -10.33883 -9.72970 -8.80288 -8.53026 -8.28041 -8.23644 -6.68140 -4.00499 2.42761 3.13922 3.14593 3.19692 3.30992 3.91704 4.08200 4.23814 4.39809 4.55361 4.73247 4.95622 5.05259 5.14059 5.16904 5.20541 5.26100 5.30266 5.41561 5.45077 5.57849 5.65084 5.73052 5.75959 5.79733 5.89035 5.98477 6.02065 6.12459 6.18177 6.67070 6.88162 6.92145 7.29912 7.67611 7.86196 8.31608 8.61269 8.95012 9.30700 9.83941 10.46656 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045149 B = 0.003592 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.026042 B = 7792.159734 C = 7949.692000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.509 5.509 3 C 0.024 3.976 4 C 0.145 3.855 5 H 0.102 0.898 6 N -0.709 5.709 7 C 0.515 3.485 8 O -0.543 6.543 9 C 0.393 3.607 10 O -0.599 6.599 11 N -0.498 5.498 12 C -0.306 4.306 13 H 0.112 0.888 14 C 0.031 3.969 15 N -0.868 5.868 16 Si 0.939 3.061 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.130 4.130 21 C 0.087 3.913 22 C -0.127 4.127 23 C -0.170 4.170 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.409 0.591 30 H 0.405 0.595 31 H 0.281 0.719 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 -14.883 -3.891 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.233 5.233 3 C -0.105 4.105 4 C 0.039 3.961 5 H 0.120 0.880 6 N -0.363 5.363 7 C 0.299 3.701 8 O -0.419 6.419 9 C 0.177 3.823 10 O -0.488 6.488 11 N -0.132 5.132 12 C -0.437 4.437 13 H 0.130 0.870 14 C -0.176 4.176 15 N -0.506 5.506 16 Si 0.764 3.236 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.168 4.168 21 C -0.003 4.003 22 C -0.185 4.185 23 C -0.228 4.228 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.245 0.755 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.296 -15.073 -3.148 17.986 hybrid contribution -0.091 1.202 -0.850 1.475 sum -9.387 -13.871 -3.998 17.219 Atomic orbital electron populations 1.22564 0.88111 1.01828 1.01031 1.64821 1.08118 1.14802 1.35596 1.23663 0.95040 0.89511 1.02296 1.21741 0.94793 0.83635 0.95950 0.88037 1.45704 1.61062 1.17250 1.12267 1.20718 0.77526 0.85321 0.86519 1.90696 1.56429 1.79646 1.15134 1.18953 0.89773 0.85971 0.87578 1.90578 1.63581 1.80203 1.14414 1.41568 1.46191 1.14283 1.11172 1.19886 1.35095 0.92787 0.95929 0.86978 1.25591 0.96518 1.00308 0.95160 1.69484 1.40503 1.35977 1.04622 0.85720 0.78398 0.80112 0.79321 1.19892 1.20496 1.18890 1.22823 0.97606 0.97408 0.98985 1.21797 0.93824 0.95696 0.88986 1.21744 1.01787 0.93410 1.01572 1.22450 0.99627 1.01990 0.98731 0.94685 0.91473 0.91417 0.93217 0.89200 0.75485 0.75975 0.90887 0.90422 0.89911 0.92762 0.92431 0.91717 0.92435 0.91889 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.32 60.07 0.50 0.63 16 2 N -0.51 -5.87 5.17 -223.14 -1.15 -7.03 16 3 C 0.02 0.32 6.23 -1.89 -0.01 0.31 16 4 C 0.14 2.06 3.35 -66.07 -0.22 1.84 16 5 H 0.10 1.60 7.69 -51.93 -0.40 1.20 16 6 N -0.71 -12.03 5.20 -52.63 -0.27 -12.30 16 7 C 0.51 11.11 7.86 -11.88 -0.09 11.02 16 8 O -0.54 -12.64 16.19 5.42 0.09 -12.55 16 9 C 0.39 9.88 7.82 -11.88 -0.09 9.79 16 10 O -0.60 -15.99 16.03 5.36 0.09 -15.90 16 11 N -0.50 -13.32 5.25 -11.59 -0.06 -13.38 16 12 C -0.31 -8.44 9.67 -15.14 -0.15 -8.58 16 13 H 0.11 3.15 7.15 -52.49 -0.38 2.77 16 14 C 0.03 0.81 5.51 -17.40 -0.10 0.72 16 15 N -0.87 -23.23 13.03 55.53 0.72 -22.51 16 16 Si 0.94 20.03 29.56 -169.99 -5.02 15.00 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 20 C -0.13 -1.42 5.94 -25.37 -0.15 -1.57 16 21 C 0.09 0.86 0.89 -130.53 -0.12 0.75 16 22 C -0.13 -1.11 8.64 37.16 0.32 -0.78 16 23 C -0.17 -1.47 6.97 37.16 0.26 -1.21 16 24 H 0.03 0.32 6.16 -51.93 -0.32 0.00 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.56 7.86 -51.93 -0.41 0.16 16 27 H 0.05 0.68 8.00 -51.93 -0.42 0.26 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.41 6.55 7.79 -40.82 -0.32 6.23 16 30 H 0.40 10.91 7.35 -40.82 -0.30 10.61 16 31 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 32 H 0.08 0.80 7.26 -51.93 -0.38 0.42 16 33 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.55 7.63 -51.93 -0.40 0.15 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.49 6.66 -51.93 -0.35 0.15 16 LS Contribution 321.34 15.07 4.84 4.84 Total: -1.00 -30.09 321.34 -6.35 -36.44 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -5.73 Total: 14.49 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 0.15 Total: 12.90 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.77 Total: -55.22 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: 0.17 Total: -28.46 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.09 -6.35 -36.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694198411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.728 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds