Wall clock time and date at job start Mon Mar 30 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48541 * 110.99805 * 2 1 4 4 C 1.54938 * 103.22605 * 200.28158 * 3 2 1 5 5 H 1.08999 * 110.72392 * 278.87928 * 4 3 2 6 6 N 1.46501 * 110.72527 * 155.77041 * 4 3 2 7 7 C 1.34779 * 119.99726 * 86.45394 * 6 4 3 8 8 O 1.21441 * 120.00302 * 359.97438 * 7 6 4 9 9 C 1.48830 * 119.99991 * 180.02562 * 7 6 4 10 10 O 1.21504 * 119.99845 * 359.97438 * 9 7 6 11 11 N 1.34768 * 120.00181 * 179.97438 * 9 7 6 12 12 C 1.36127 * 120.00332 * 179.97438 * 11 9 7 13 13 H 1.08002 * 119.99657 * 0.02562 * 12 11 9 14 14 C 1.39585 * 119.99997 * 180.02562 * 12 11 9 15 15 N 1.31014 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99726 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47113 * 89.99631 * 16 14 12 18 18 H 1.48499 * 109.47288 * 210.00153 * 16 14 12 19 19 H 1.48502 * 109.46984 * 329.99799 * 16 14 12 20 20 C 1.54595 * 102.92210 * 37.41378 * 4 3 2 21 21 C 1.47902 * 110.99844 * 242.60590 * 2 1 3 22 22 C 1.53000 * 109.91609 * 265.19345 * 21 2 1 23 23 C 1.52999 * 109.92077 * 26.48952 * 21 2 1 24 24 H 1.09002 * 109.47401 * 59.87334 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.87347 * 1 2 3 26 26 H 1.09004 * 109.46970 * 179.87480 * 1 2 3 27 27 H 1.09005 * 110.66282 * 318.71281 * 3 2 1 28 28 H 1.08998 * 110.66710 * 81.84805 * 3 2 1 29 29 H 0.96993 * 120.00276 * 266.45394 * 6 4 3 30 30 H 0.97002 * 120.00203 * 0.02562 * 11 9 7 31 31 H 0.96999 * 119.99790 * 180.02562 * 15 14 12 32 32 H 1.09000 * 110.30970 * 96.95903 * 20 4 3 33 33 H 1.08998 * 110.31044 * 219.02980 * 20 4 3 34 34 H 1.08994 * 109.47260 * 61.45533 * 22 21 2 35 35 H 1.09001 * 109.47012 * 181.45618 * 22 21 2 36 36 H 1.09004 * 109.47141 * 301.45223 * 22 21 2 37 37 H 1.09006 * 109.46905 * 58.54345 * 23 21 2 38 38 H 1.08999 * 109.47549 * 178.54779 * 23 21 2 39 39 H 1.09002 * 109.47020 * 298.55202 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3868 0.0000 4 6 3.4491 1.2107 -0.5228 5 1 4.1122 0.8867 0.2793 6 7 3.9371 2.4534 -1.1261 7 6 4.5134 3.3962 -0.3544 8 8 4.6276 3.2159 0.8411 9 6 5.0086 4.6588 -0.9671 10 8 4.8939 4.8395 -2.1632 11 7 5.5844 5.6018 -0.1954 12 6 6.0379 6.7565 -0.7559 13 1 5.9359 6.9170 -1.8191 14 6 6.6346 7.7329 0.0434 15 7 6.7588 7.5379 1.3330 16 14 7.2562 9.3177 -0.7257 17 1 6.1700 10.3302 -0.7196 18 1 8.4121 9.8268 0.0553 19 1 7.6809 9.0557 -2.1245 20 6 3.2982 0.1055 -1.5931 21 6 1.9990 -0.6353 -1.2260 22 6 2.2983 -2.1120 -0.9601 23 6 0.9839 -0.5019 -2.3629 24 1 -0.3634 0.5158 -0.8888 25 1 -0.3633 0.5119 0.8911 26 1 -0.3633 -1.0277 -0.0022 27 1 1.4236 2.0205 -0.6730 28 1 2.0041 1.7977 1.0095 29 1 3.8456 2.5976 -2.0809 30 1 5.6763 5.4575 0.7594 31 1 7.1731 8.2167 1.8884 32 1 3.2135 0.5487 -2.5853 33 1 4.1478 -0.5764 -1.5553 34 1 1.3773 -2.6255 -0.6845 35 1 2.7124 -2.5666 -1.8601 36 1 3.0186 -2.1960 -0.1463 37 1 0.7745 0.5530 -2.5410 38 1 1.3922 -0.9494 -3.2690 39 1 0.0616 -1.0139 -2.0884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694198411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:56 Heat of formation + Delta-G solvation = -89.838980 kcal Electronic energy + Delta-G solvation = -20889.397153 eV Core-core repulsion = 17637.945941 eV Total energy + Delta-G solvation = -3251.451212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.61452 -40.60623 -39.02547 -36.54267 -35.69497 -33.47720 -33.34815 -31.71136 -28.32785 -27.90236 -26.79565 -25.90747 -24.51838 -22.10306 -21.32619 -20.40258 -19.76985 -18.82252 -17.86147 -17.04680 -16.77841 -16.50194 -16.29020 -15.78538 -15.71078 -15.12152 -15.01086 -14.63859 -14.42974 -14.11061 -14.00011 -13.67428 -13.48812 -12.97983 -12.81716 -12.67085 -12.59116 -12.51322 -12.38101 -12.22668 -12.11152 -12.07511 -11.83769 -11.67216 -11.54647 -10.30854 -10.27898 -10.21295 -9.42183 -8.66814 -6.11911 0.57884 1.40816 1.46930 1.55477 1.75595 2.27927 2.35423 2.95566 3.14174 3.28716 3.51930 3.56689 3.90956 4.00806 4.10013 4.15482 4.30231 4.43063 4.48894 4.60636 4.71052 4.77573 4.87672 4.90658 4.96219 4.99230 5.03734 5.06546 5.22572 5.24394 5.35150 5.47277 5.66813 5.87917 6.08487 6.14826 6.37233 6.80071 7.00228 7.26714 7.78552 8.48975 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045149 B = 0.003592 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.026042 B = 7792.159734 C = 7949.692000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.518 5.518 3 C 0.029 3.971 4 C 0.139 3.861 5 H 0.086 0.914 6 N -0.686 5.686 7 C 0.521 3.479 8 O -0.563 6.563 9 C 0.389 3.611 10 O -0.617 6.617 11 N -0.510 5.510 12 C -0.346 4.346 13 H 0.100 0.900 14 C -0.004 4.004 15 N -0.895 5.895 16 Si 1.011 2.989 17 H -0.265 1.265 18 H -0.267 1.267 19 H -0.263 1.263 20 C -0.123 4.123 21 C 0.085 3.915 22 C -0.124 4.124 23 C -0.166 4.166 24 H 0.040 0.960 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.416 0.584 30 H 0.401 0.599 31 H 0.289 0.711 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 -15.790 -4.963 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.242 5.242 3 C -0.100 4.100 4 C 0.034 3.966 5 H 0.104 0.896 6 N -0.339 5.339 7 C 0.304 3.696 8 O -0.442 6.442 9 C 0.174 3.826 10 O -0.507 6.507 11 N -0.143 5.143 12 C -0.476 4.476 13 H 0.117 0.883 14 C -0.209 4.209 15 N -0.533 5.533 16 Si 0.831 3.169 17 H -0.189 1.189 18 H -0.191 1.191 19 H -0.187 1.187 20 C -0.162 4.162 21 C -0.004 4.004 22 C -0.182 4.182 23 C -0.224 4.224 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.253 0.747 30 H 0.235 0.765 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.888 -16.022 -4.233 19.297 hybrid contribution 0.022 1.367 -0.514 1.461 sum -9.866 -14.655 -4.748 18.293 Atomic orbital electron populations 1.22629 0.86821 1.02998 1.01165 1.64835 1.09421 1.13056 1.36883 1.23476 0.94595 0.91035 1.00898 1.21940 0.94756 0.83059 0.96865 0.89620 1.45637 1.59005 1.17027 1.12238 1.20104 0.78135 0.85000 0.86337 1.90690 1.57709 1.79924 1.15835 1.19590 0.88813 0.86807 0.87407 1.90543 1.64019 1.80928 1.15185 1.41662 1.46900 1.14788 1.10997 1.19995 1.37624 0.94157 0.95796 0.88261 1.26554 0.95643 1.03194 0.95489 1.69551 1.40608 1.37348 1.05784 0.84688 0.78207 0.75558 0.78431 1.18947 1.19120 1.18716 1.22862 0.98885 0.96298 0.98112 1.21912 0.93475 0.96190 0.88851 1.21730 1.02010 0.92367 1.02078 1.22419 0.99714 1.01658 0.98643 0.94138 0.91825 0.89663 0.93343 0.91353 0.74651 0.76486 0.90067 0.89359 0.88700 0.92042 0.90721 0.92701 0.93407 0.90509 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.32 127.69 1.06 1.27 16 2 N -0.52 -11.19 5.17 -859.89 -4.45 -15.64 16 3 C 0.03 0.79 6.23 86.65 0.54 1.33 16 4 C 0.14 3.87 3.35 46.20 0.15 4.02 16 5 H 0.09 2.72 7.69 -2.39 -0.02 2.70 16 6 N -0.69 -23.12 5.20 -438.75 -2.28 -25.40 16 7 C 0.52 22.86 7.86 87.08 0.68 23.55 16 8 O -0.56 -26.84 16.19 -3.53 -0.06 -26.90 16 9 C 0.39 20.01 7.82 87.08 0.68 20.69 16 10 O -0.62 -33.44 16.03 -3.73 -0.06 -33.50 16 11 N -0.51 -28.13 5.25 -308.88 -1.62 -29.75 16 12 C -0.35 -19.51 9.67 84.35 0.82 -18.69 16 13 H 0.10 5.73 7.15 -2.91 -0.02 5.71 16 14 C 0.00 -0.23 5.51 85.14 0.47 0.24 16 15 N -0.90 -48.26 13.03 21.76 0.28 -47.98 16 16 Si 1.01 40.70 29.56 68.60 2.03 42.73 16 17 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 18 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 20 C -0.12 -2.44 5.94 31.47 0.19 -2.25 16 21 C 0.09 1.49 0.89 3.67 0.00 1.50 16 22 C -0.12 -1.80 8.64 71.98 0.62 -1.18 16 23 C -0.17 -2.38 6.97 71.98 0.50 -1.88 16 24 H 0.04 0.67 6.16 -2.39 -0.01 0.65 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.19 7.86 -2.38 -0.02 1.17 16 27 H 0.05 1.30 8.00 -2.38 -0.02 1.28 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.42 12.99 7.79 -92.71 -0.72 12.26 16 30 H 0.40 22.39 7.35 -92.71 -0.68 21.71 16 31 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 32 H 0.09 1.59 7.26 -2.39 -0.02 1.57 16 33 H 0.09 1.68 7.69 -2.39 -0.02 1.66 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 0.79 7.63 -2.38 -0.02 0.77 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.91 6.66 -2.39 -0.02 0.90 16 Total: -1.00 -65.29 321.34 -0.76 -66.05 By element: Atomic # 1 Polarization: 42.12 SS G_CDS: -0.33 Total: 41.79 kcal Atomic # 6 Polarization: 22.87 SS G_CDS: 5.72 Total: 28.59 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -8.07 Total: -118.76 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: -0.12 Total: -60.39 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -65.29 -0.76 -66.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694198411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.787 kcal (2) G-P(sol) polarization free energy of solvation -65.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds