Wall clock time and date at job start Mon Mar 30 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.73494 * 2 1 4 4 C 1.53293 * 109.70755 * 239.39315 * 2 1 3 5 5 N 1.46831 * 109.40096 * 186.51826 * 4 2 1 6 6 C 1.46902 * 111.00133 * 189.75531 * 5 4 2 7 7 C 1.50695 * 109.46853 * 300.05960 * 6 5 4 8 8 O 1.21294 * 120.00439 * 353.88417 * 7 6 5 9 9 N 1.34781 * 119.99695 * 173.88953 * 7 6 5 10 10 C 1.37092 * 119.99688 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00476 * 0.02562 * 10 9 7 12 12 C 1.38959 * 119.99736 * 179.97438 * 10 9 7 13 13 N 1.31407 * 120.00017 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99742 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47045 * 270.00033 * 14 12 10 16 16 H 1.48497 * 109.47556 * 29.99994 * 14 12 10 17 17 H 1.48501 * 109.47129 * 150.00161 * 14 12 10 18 18 C 1.46823 * 111.56336 * 65.38699 * 5 4 2 19 19 C 1.53307 * 109.40119 * 294.61583 * 18 5 4 20 20 H 1.09000 * 109.70719 * 294.10917 * 19 18 5 21 21 C 1.52999 * 109.71163 * 173.48373 * 19 18 5 22 22 C 1.51430 * 108.23952 * 53.79140 * 19 18 5 23 23 N 1.27954 * 121.10740 * 130.99714 * 22 19 18 24 24 O 1.41606 * 119.99996 * 183.06986 * 23 22 19 25 25 H 1.08999 * 109.46993 * 307.96345 * 1 2 3 26 26 H 1.08996 * 109.47262 * 67.96665 * 1 2 3 27 27 H 1.09002 * 109.47189 * 187.96382 * 1 2 3 28 28 H 1.09002 * 109.48419 * 66.54124 * 4 2 1 29 29 H 1.08995 * 109.48956 * 306.49665 * 4 2 1 30 30 H 1.09004 * 109.46793 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.46958 * 60.06412 * 6 5 4 32 32 H 0.96994 * 120.00110 * 359.97438 * 9 7 6 33 33 H 0.97005 * 119.99588 * 359.97438 * 13 12 10 34 34 H 1.08997 * 109.48824 * 54.59390 * 18 5 4 35 35 H 1.09002 * 109.48479 * 174.62756 * 18 5 4 36 36 H 1.08999 * 109.46960 * 59.99624 * 21 19 18 37 37 H 1.08999 * 109.47230 * 179.97438 * 21 19 18 38 38 H 1.09007 * 109.46561 * 300.00132 * 21 19 18 39 39 H 0.96696 * 113.99905 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0469 -0.7348 -1.2421 5 7 3.5068 -0.8676 -1.1579 6 6 4.0651 -1.3558 -2.4260 7 6 3.4738 -2.7037 -2.7491 8 8 2.7532 -3.2583 -1.9464 9 7 3.7459 -3.2932 -3.9303 10 6 3.2084 -4.5197 -4.2241 11 1 2.5668 -5.0134 -3.5094 12 6 3.4885 -5.1272 -5.4421 13 7 4.2688 -4.5263 -6.3120 14 14 2.7556 -6.7980 -5.8427 15 1 3.6773 -7.8666 -5.3801 16 1 1.4467 -6.9420 -5.1562 17 1 2.5603 -6.9139 -7.3102 18 6 3.9065 -1.7313 -0.0398 19 6 3.5157 -1.0642 1.2840 20 1 4.0969 -0.1524 1.4217 21 6 3.7801 -2.0258 2.4443 22 6 2.0407 -0.7259 1.2270 23 7 1.2524 -1.0424 2.1839 24 8 -0.1337 -0.7728 2.0778 25 1 -0.3633 0.6322 0.8102 26 1 -0.3633 0.3855 -0.9526 27 1 -0.3634 -1.0178 0.1424 28 1 1.7844 -0.1679 -2.1354 29 1 1.5942 -1.7249 -1.2936 30 1 5.1476 -1.4455 -2.3357 31 1 3.8244 -0.6528 -3.2234 32 1 4.3219 -2.8497 -4.5724 33 1 4.6491 -3.6584 -6.1040 34 1 3.4014 -2.6934 -0.1250 35 1 4.9855 -1.8836 -0.0657 36 1 4.8389 -2.2835 2.4684 37 1 3.5014 -1.5475 3.3833 38 1 3.1887 -2.9312 2.3076 39 1 -0.6479 -1.0477 2.8492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696567582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:16 Heat of formation + Delta-G solvation = -17.468538 kcal Electronic energy + Delta-G solvation = -21566.616658 eV Core-core repulsion = 18318.303664 eV Total energy + Delta-G solvation = -3248.312994 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.87043 -38.24453 -36.38103 -34.61030 -33.84691 -33.31275 -31.24227 -30.26345 -27.62110 -26.45698 -25.05465 -23.81801 -21.70653 -21.18744 -19.66377 -18.88885 -17.96402 -17.39711 -16.40277 -15.67332 -15.35689 -14.96448 -14.56929 -14.27887 -14.09732 -13.70349 -13.64779 -13.51873 -12.98301 -12.47697 -12.25478 -11.97522 -11.92242 -11.67653 -11.37682 -11.29478 -11.26431 -11.05872 -10.81798 -10.68766 -10.52024 -10.26286 -9.93520 -9.55545 -9.37337 -9.26862 -9.14062 -8.09773 -7.54761 -6.82325 -3.95576 2.17733 3.21221 3.24929 3.31188 3.50207 3.73873 4.13481 4.21266 4.48754 4.79610 4.96891 5.08787 5.19527 5.26655 5.38553 5.46177 5.48346 5.63161 5.74341 5.82360 5.88005 5.90041 5.93920 6.00727 6.07317 6.15055 6.25585 6.29032 6.40723 6.50292 6.60220 6.99232 7.22619 7.31312 7.72702 7.85438 8.01849 8.51349 8.71965 9.39907 9.78296 10.60788 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.004642 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.212889 B = 6030.006693 C = 6198.515149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 H 0.089 0.911 4 C 0.050 3.950 5 N -0.517 5.517 6 C 0.043 3.957 7 C 0.407 3.593 8 O -0.587 6.587 9 N -0.568 5.568 10 C -0.384 4.384 11 H 0.099 0.901 12 C -0.007 4.007 13 N -0.897 5.897 14 Si 1.092 2.908 15 H -0.284 1.284 16 H -0.284 1.284 17 H -0.280 1.280 18 C 0.048 3.952 19 C -0.029 4.029 20 H 0.097 0.903 21 C -0.138 4.138 22 C 0.154 3.846 23 N -0.346 5.346 24 O -0.399 6.399 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.376 0.624 33 H 0.262 0.738 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 9.170 11.998 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.107 0.893 4 C -0.079 4.079 5 N -0.239 5.239 6 C -0.089 4.089 7 C 0.193 3.807 8 O -0.474 6.474 9 N -0.205 5.205 10 C -0.514 4.514 11 H 0.116 0.884 12 C -0.210 4.210 13 N -0.536 5.536 14 Si 0.918 3.082 15 H -0.210 1.210 16 H -0.210 1.210 17 H -0.206 1.206 18 C -0.081 4.081 19 C -0.049 4.049 20 H 0.115 0.885 21 C -0.196 4.196 22 C -0.039 4.039 23 N -0.090 5.090 24 O -0.304 6.304 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.209 0.791 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.750 7.902 11.771 14.285 hybrid contribution -0.329 0.952 0.329 1.060 sum -2.079 8.854 12.100 15.137 Atomic orbital electron populations 1.21877 0.93128 1.03615 1.00496 1.21105 0.96357 0.99525 0.93180 0.89315 1.22346 0.87969 1.01415 0.96127 1.62255 1.10899 1.48098 1.02688 1.22053 1.00127 0.94134 0.92591 1.21042 0.86959 0.88970 0.83740 1.90438 1.41922 1.66533 1.48489 1.42127 1.43901 1.18895 1.15551 1.20581 1.30256 0.95631 1.04914 0.88361 1.26522 0.96930 1.05901 0.91672 1.70876 1.30140 1.16311 1.36298 0.83105 0.75855 0.72802 0.76390 1.21041 1.20969 1.20557 1.22399 1.00857 0.96869 0.87985 1.20360 0.87985 1.00078 0.96461 0.88498 1.21668 1.01447 0.99348 0.97137 1.25393 0.95556 0.91800 0.91163 1.75922 0.89847 1.18436 1.24754 1.89146 1.13646 1.83832 1.43745 0.91100 0.93307 0.91404 0.91169 0.90610 0.89086 0.89313 0.79054 0.92629 0.90154 0.90539 0.92219 0.92025 0.92171 0.77907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.55 37.16 0.28 -1.60 16 2 C -0.08 -1.18 3.17 -91.26 -0.29 -1.47 16 3 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.05 0.84 4.26 -3.71 -0.02 0.83 16 5 N -0.52 -8.31 4.77 -235.81 -1.13 -9.43 16 6 C 0.04 0.72 5.81 -4.98 -0.03 0.69 16 7 C 0.41 9.13 7.19 -10.99 -0.08 9.05 16 8 O -0.59 -14.99 11.32 5.55 0.06 -14.93 16 9 N -0.57 -13.86 5.28 -10.96 -0.06 -13.92 16 10 C -0.38 -10.60 9.68 -14.93 -0.14 -10.75 16 11 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 12 C -0.01 -0.19 5.50 -17.47 -0.10 -0.29 16 13 N -0.90 -24.77 13.68 55.50 0.76 -24.01 16 14 Si 1.09 24.10 29.92 -169.99 -5.09 19.02 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.05 0.75 4.34 -3.71 -0.02 0.74 16 19 C -0.03 -0.39 3.17 -91.25 -0.29 -0.68 16 20 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 21 C -0.14 -1.69 8.56 37.16 0.32 -1.37 16 22 C 0.15 2.31 6.37 -78.22 -0.50 1.81 16 23 N -0.35 -5.17 11.00 35.93 0.40 -4.78 16 24 O -0.40 -5.27 9.37 -11.47 -0.11 -5.38 16 25 H 0.07 0.95 6.56 -51.93 -0.34 0.61 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.08 6.79 -51.93 -0.35 0.73 16 28 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 29 H 0.08 1.58 5.83 -51.93 -0.30 1.28 16 30 H 0.09 1.36 8.04 -51.93 -0.42 0.95 16 31 H 0.09 1.35 8.12 -51.93 -0.42 0.93 16 32 H 0.38 8.49 6.73 -40.82 -0.27 8.22 16 33 H 0.26 6.94 6.78 -40.82 -0.28 6.66 16 34 H 0.08 1.59 5.78 -51.93 -0.30 1.29 16 35 H 0.08 1.10 8.01 -51.93 -0.42 0.68 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.71 8.02 -51.93 -0.42 0.29 16 38 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 39 H 0.37 3.35 9.28 45.56 0.42 3.77 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -31.74 308.14 -6.17 -37.91 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -4.80 Total: 13.93 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.86 Total: -3.05 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.03 Total: -52.14 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.04 Total: -20.31 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.09 Total: 19.02 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.74 -6.17 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696567582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.441 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds