Wall clock time and date at job start Mon Mar 30 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.73494 * 2 1 4 4 C 1.53293 * 109.70755 * 239.39315 * 2 1 3 5 5 N 1.46831 * 109.40096 * 186.51826 * 4 2 1 6 6 C 1.46902 * 111.00133 * 189.75531 * 5 4 2 7 7 C 1.50695 * 109.46853 * 300.05960 * 6 5 4 8 8 O 1.21294 * 120.00439 * 353.88417 * 7 6 5 9 9 N 1.34781 * 119.99695 * 173.88953 * 7 6 5 10 10 C 1.37092 * 119.99688 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00476 * 0.02562 * 10 9 7 12 12 C 1.38959 * 119.99736 * 179.97438 * 10 9 7 13 13 N 1.31407 * 120.00017 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99742 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47045 * 270.00033 * 14 12 10 16 16 H 1.48497 * 109.47556 * 29.99994 * 14 12 10 17 17 H 1.48501 * 109.47129 * 150.00161 * 14 12 10 18 18 C 1.46823 * 111.56336 * 65.38699 * 5 4 2 19 19 C 1.53307 * 109.40119 * 294.61583 * 18 5 4 20 20 H 1.09000 * 109.70719 * 294.10917 * 19 18 5 21 21 C 1.52999 * 109.71163 * 173.48373 * 19 18 5 22 22 C 1.51430 * 108.23952 * 53.79140 * 19 18 5 23 23 N 1.27954 * 121.10740 * 130.99714 * 22 19 18 24 24 O 1.41606 * 119.99996 * 183.06986 * 23 22 19 25 25 H 1.08999 * 109.46993 * 307.96345 * 1 2 3 26 26 H 1.08996 * 109.47262 * 67.96665 * 1 2 3 27 27 H 1.09002 * 109.47189 * 187.96382 * 1 2 3 28 28 H 1.09002 * 109.48419 * 66.54124 * 4 2 1 29 29 H 1.08995 * 109.48956 * 306.49665 * 4 2 1 30 30 H 1.09004 * 109.46793 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.46958 * 60.06412 * 6 5 4 32 32 H 0.96994 * 120.00110 * 359.97438 * 9 7 6 33 33 H 0.97005 * 119.99588 * 359.97438 * 13 12 10 34 34 H 1.08997 * 109.48824 * 54.59390 * 18 5 4 35 35 H 1.09002 * 109.48479 * 174.62756 * 18 5 4 36 36 H 1.08999 * 109.46960 * 59.99624 * 21 19 18 37 37 H 1.08999 * 109.47230 * 179.97438 * 21 19 18 38 38 H 1.09007 * 109.46561 * 300.00132 * 21 19 18 39 39 H 0.96696 * 113.99905 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0469 -0.7348 -1.2421 5 7 3.5068 -0.8676 -1.1579 6 6 4.0651 -1.3558 -2.4260 7 6 3.4738 -2.7037 -2.7491 8 8 2.7532 -3.2583 -1.9464 9 7 3.7459 -3.2932 -3.9303 10 6 3.2084 -4.5197 -4.2241 11 1 2.5668 -5.0134 -3.5094 12 6 3.4885 -5.1272 -5.4421 13 7 4.2688 -4.5263 -6.3120 14 14 2.7556 -6.7980 -5.8427 15 1 3.6773 -7.8666 -5.3801 16 1 1.4467 -6.9420 -5.1562 17 1 2.5603 -6.9139 -7.3102 18 6 3.9065 -1.7313 -0.0398 19 6 3.5157 -1.0642 1.2840 20 1 4.0969 -0.1524 1.4217 21 6 3.7801 -2.0258 2.4443 22 6 2.0407 -0.7259 1.2270 23 7 1.2524 -1.0424 2.1839 24 8 -0.1337 -0.7728 2.0778 25 1 -0.3633 0.6322 0.8102 26 1 -0.3633 0.3855 -0.9526 27 1 -0.3634 -1.0178 0.1424 28 1 1.7844 -0.1679 -2.1354 29 1 1.5942 -1.7249 -1.2936 30 1 5.1476 -1.4455 -2.3357 31 1 3.8244 -0.6528 -3.2234 32 1 4.3219 -2.8497 -4.5724 33 1 4.6491 -3.6584 -6.1040 34 1 3.4014 -2.6934 -0.1250 35 1 4.9855 -1.8836 -0.0657 36 1 4.8389 -2.2835 2.4684 37 1 3.5014 -1.5475 3.3833 38 1 3.1887 -2.9312 2.3076 39 1 -0.6479 -1.0477 2.8492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696567582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:15 Heat of formation + Delta-G solvation = -42.401284 kcal Electronic energy + Delta-G solvation = -21567.697823 eV Core-core repulsion = 18318.303664 eV Total energy + Delta-G solvation = -3249.394159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29936 -39.78202 -37.68793 -36.35963 -35.22047 -34.50345 -33.19958 -31.46975 -29.02184 -27.68256 -26.70364 -25.33612 -23.08036 -22.35167 -21.39697 -20.13381 -19.89400 -18.61834 -18.02675 -17.01519 -16.75394 -16.54864 -15.96147 -15.69033 -15.66335 -15.29144 -15.13402 -14.85652 -14.14088 -13.74602 -13.45011 -13.36602 -13.24463 -13.16558 -12.88977 -12.80720 -12.51464 -12.47415 -12.07213 -11.98446 -11.92262 -11.89502 -11.71581 -11.40724 -11.04134 -10.42855 -10.30298 -10.09811 -9.12819 -8.93793 -6.08203 1.04140 1.48351 1.51795 1.78424 1.97165 2.19643 2.39460 2.82614 3.06425 3.14833 3.36236 3.82380 3.92971 4.10436 4.15035 4.26079 4.31357 4.35907 4.39713 4.58284 4.62952 4.66815 4.74202 4.88906 4.91901 5.00771 5.10388 5.15871 5.20325 5.30099 5.36063 5.58471 5.82020 5.95335 5.96776 6.08528 6.54922 6.73581 6.85581 7.42599 7.91061 8.53280 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.004642 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.212889 B = 6030.006693 C = 6198.515149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.110 0.890 4 C 0.055 3.945 5 N -0.500 5.500 6 C 0.050 3.950 7 C 0.410 3.590 8 O -0.619 6.619 9 N -0.583 5.583 10 C -0.409 4.409 11 H 0.068 0.932 12 C -0.040 4.040 13 N -0.915 5.915 14 Si 1.133 2.867 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.049 3.951 19 C -0.023 4.023 20 H 0.125 0.875 21 C -0.132 4.132 22 C 0.138 3.862 23 N -0.356 5.356 24 O -0.404 6.404 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.385 0.615 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 10.659 12.634 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.097 4.097 3 H 0.128 0.872 4 C -0.074 4.074 5 N -0.222 5.222 6 C -0.081 4.081 7 C 0.197 3.803 8 O -0.506 6.506 9 N -0.222 5.222 10 C -0.539 4.539 11 H 0.086 0.914 12 C -0.238 4.238 13 N -0.554 5.554 14 Si 0.953 3.047 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.196 1.196 18 C -0.079 4.079 19 C -0.043 4.043 20 H 0.143 0.857 21 C -0.190 4.190 22 C -0.055 4.055 23 N -0.098 5.098 24 O -0.312 6.312 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.219 0.781 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.924 9.414 12.435 15.623 hybrid contribution -0.653 0.537 0.255 0.883 sum -1.578 9.951 12.689 16.202 Atomic orbital electron populations 1.21798 0.92952 1.02245 1.01322 1.21108 0.96504 1.00191 0.91911 0.87192 1.22253 0.88116 0.99260 0.97800 1.62373 1.10301 1.47144 1.02352 1.22216 1.01398 0.90798 0.93735 1.22249 0.85344 0.90366 0.82317 1.90462 1.42928 1.67933 1.49286 1.42180 1.44823 1.18493 1.16669 1.20484 1.31068 0.97357 1.04957 0.91379 1.27717 0.96567 1.08368 0.91183 1.70939 1.31061 1.16728 1.36692 0.82621 0.75596 0.69855 0.76629 1.19562 1.20716 1.19649 1.22382 1.01390 0.94987 0.89187 1.20402 0.87508 1.01138 0.95257 0.85748 1.21625 1.02263 0.98018 0.97085 1.25682 0.96390 0.92096 0.91325 1.75851 0.90622 1.18134 1.25227 1.89098 1.12996 1.83855 1.45217 0.90101 0.92547 0.93916 0.90404 0.95284 0.86162 0.86843 0.78059 0.92787 0.94669 0.88697 0.90245 0.91061 0.94736 0.75864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 7.55 71.98 0.54 -2.88 16 2 C -0.08 -2.12 3.17 -11.21 -0.04 -2.16 16 3 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.05 1.80 4.26 86.41 0.37 2.17 16 5 N -0.50 -15.13 4.77 -899.97 -4.29 -19.42 16 6 C 0.05 1.59 5.81 85.56 0.50 2.09 16 7 C 0.41 18.48 7.19 87.65 0.63 19.11 16 8 O -0.62 -32.67 11.32 -3.07 -0.03 -32.70 16 9 N -0.58 -28.81 5.28 -306.98 -1.62 -30.43 16 10 C -0.41 -23.15 9.68 84.04 0.81 -22.34 16 11 H 0.07 4.20 7.16 -2.91 -0.02 4.18 16 12 C -0.04 -2.13 5.50 84.93 0.47 -1.66 16 13 N -0.92 -50.49 13.68 21.67 0.30 -50.19 16 14 Si 1.13 48.70 29.92 68.60 2.05 50.75 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 C 0.05 1.50 4.34 86.42 0.38 1.88 16 19 C -0.02 -0.58 3.17 -11.21 -0.04 -0.62 16 20 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 21 C -0.13 -3.03 8.56 71.98 0.62 -2.42 16 22 C 0.14 3.96 6.37 47.00 0.30 4.26 16 23 N -0.36 -10.29 11.00 -40.11 -0.44 -10.73 16 24 O -0.40 -10.28 9.37 -38.80 -0.36 -10.64 16 25 H 0.08 2.03 6.56 -2.39 -0.02 2.02 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.37 6.79 -2.39 -0.02 1.35 16 28 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 29 H 0.03 1.24 5.83 -2.39 -0.01 1.23 16 30 H 0.12 3.21 8.04 -2.38 -0.02 3.19 16 31 H 0.11 3.12 8.12 -2.39 -0.02 3.10 16 32 H 0.39 17.40 6.73 -92.71 -0.62 16.78 16 33 H 0.26 13.85 6.78 -92.70 -0.63 13.22 16 34 H 0.04 1.42 5.78 -2.39 -0.01 1.40 16 35 H 0.09 2.50 8.01 -2.39 -0.02 2.49 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.50 8.02 -2.39 -0.02 1.48 16 38 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.39 6.59 9.28 -74.06 -0.69 5.90 16 Total: -1.00 -70.33 308.14 0.04 -70.29 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -0.09 Total: 35.63 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.54 Total: -2.57 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -6.06 Total: -110.77 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.40 Total: -43.34 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.05 Total: 50.75 kcal Total: -70.33 0.04 -70.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696567582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.892 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds