Wall clock time and date at job start Mon Mar 30 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.70494 * 2 1 4 4 C 1.53300 * 109.70800 * 120.58897 * 2 1 3 5 5 N 1.46827 * 109.40020 * 65.89445 * 4 2 1 6 6 C 1.46901 * 110.99807 * 189.75238 * 5 4 2 7 7 C 1.50699 * 109.47228 * 170.00349 * 6 5 4 8 8 O 1.21295 * 119.99765 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00039 * 180.02562 * 7 6 5 10 10 C 1.37094 * 119.99615 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00377 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99616 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00276 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00316 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47301 * 89.99774 * 14 12 10 16 16 H 1.48504 * 109.47635 * 210.00387 * 14 12 10 17 17 H 1.48506 * 109.47211 * 330.00021 * 14 12 10 18 18 C 1.46826 * 111.56624 * 65.38713 * 5 4 2 19 19 C 1.53299 * 109.39885 * 294.61266 * 18 5 4 20 20 H 1.09002 * 109.70539 * 294.10819 * 19 18 5 21 21 C 1.52999 * 109.70981 * 173.48174 * 19 18 5 22 22 C 1.51431 * 108.24377 * 53.79374 * 19 18 5 23 23 N 1.27956 * 121.11082 * 130.95342 * 22 19 18 24 24 O 1.41599 * 119.99602 * 174.61468 * 23 22 19 25 25 H 1.08995 * 109.46782 * 299.41123 * 1 2 3 26 26 H 1.08996 * 109.46938 * 59.41496 * 1 2 3 27 27 H 1.09000 * 109.46698 * 179.41288 * 1 2 3 28 28 H 1.08994 * 109.48327 * 305.91164 * 4 2 1 29 29 H 1.09011 * 109.47910 * 185.87382 * 4 2 1 30 30 H 1.09003 * 109.47315 * 49.99555 * 6 5 4 31 31 H 1.09003 * 109.47008 * 290.00187 * 6 5 4 32 32 H 0.96999 * 119.99911 * 0.26893 * 9 7 6 33 33 H 0.97000 * 120.00940 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.48412 * 54.58741 * 18 5 4 35 35 H 1.08998 * 109.48126 * 174.63319 * 18 5 4 36 36 H 1.09003 * 109.47298 * 305.80578 * 21 19 18 37 37 H 1.09008 * 109.47309 * 65.80601 * 21 19 18 38 38 H 1.08998 * 109.47025 * 185.80722 * 21 19 18 39 39 H 0.96708 * 113.99483 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7344 1.2424 5 7 1.6790 -2.1533 1.1585 6 6 1.9500 -2.8433 2.4268 7 6 1.3404 -4.2210 2.3895 8 8 0.7389 -4.5915 1.4034 9 7 1.4627 -5.0410 3.4521 10 6 0.9077 -6.2941 3.4182 11 1 0.3721 -6.6240 2.5403 12 6 1.0342 -7.1397 4.5134 13 7 0.5018 -8.3408 4.4813 14 14 1.9610 -6.5695 6.0317 15 1 1.0180 -5.9056 6.9671 16 1 2.5813 -7.7405 6.7021 17 1 3.0210 -5.6088 5.6328 18 6 2.3570 -2.8216 0.0407 19 6 1.8610 -2.2289 -1.2832 20 1 0.8065 -2.4680 -1.4209 21 6 2.6768 -2.8029 -2.4433 22 6 2.0407 -0.7263 -1.2268 23 7 2.6056 -0.0916 -2.1836 24 8 2.6599 1.3231 -2.1598 25 1 -0.3633 0.5046 0.8952 26 1 -0.3633 0.5229 -0.8847 27 1 -0.3633 -1.0276 -0.0105 28 1 1.6022 -0.2956 2.1354 29 1 3.1320 -0.6426 1.2937 30 1 1.5150 -2.2756 3.2494 31 1 3.0270 -2.9263 2.5723 32 1 1.9397 -4.7430 4.2423 33 1 0.5897 -8.9310 5.2460 34 1 3.4332 -2.6710 0.1259 35 1 2.1357 -3.8886 0.0669 36 1 3.7385 -2.6421 -2.2555 37 1 2.4812 -3.8717 -2.5313 38 1 2.3921 -2.3039 -3.3696 39 1 3.1061 1.7125 -2.9243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696567583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:18 Heat of formation + Delta-G solvation = -22.156006 kcal Electronic energy + Delta-G solvation = -21231.763088 eV Core-core repulsion = 17983.246830 eV Total energy + Delta-G solvation = -3248.516258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80419 -38.21659 -36.50109 -34.43589 -33.92474 -33.29081 -31.68644 -30.54692 -27.81815 -26.68509 -25.15457 -23.66866 -22.29847 -21.21870 -19.37254 -18.79184 -18.28757 -16.87458 -16.13906 -15.77318 -15.32459 -15.04548 -14.77710 -14.46256 -14.16926 -13.83801 -13.73903 -13.26622 -12.94347 -12.70130 -12.54915 -12.31469 -12.19752 -11.98353 -11.63077 -11.47381 -11.35141 -11.22002 -11.07580 -10.96617 -10.60596 -10.50628 -9.98520 -9.65847 -9.55723 -9.47299 -8.56754 -8.18908 -7.98052 -6.31917 -3.83284 1.99685 3.01717 3.03731 3.06206 3.14651 3.71737 3.85153 4.09550 4.38393 4.68177 4.85342 4.98079 5.01713 5.17392 5.21648 5.35059 5.44346 5.54728 5.60851 5.64560 5.69699 5.81410 5.82870 5.90918 5.94556 5.99448 6.03243 6.18334 6.27670 6.33971 6.44959 6.74339 7.13776 7.26764 7.57508 7.69951 8.13728 8.59162 8.94410 9.41706 9.82046 10.81135 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035647 B = 0.004262 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.289661 B = 6568.724704 C = 6886.327359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 H 0.087 0.913 4 C 0.064 3.936 5 N -0.515 5.515 6 C 0.044 3.956 7 C 0.452 3.548 8 O -0.558 6.558 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.060 3.940 19 C -0.028 4.028 20 H 0.110 0.890 21 C -0.140 4.140 22 C 0.152 3.848 23 N -0.343 5.343 24 O -0.423 6.423 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.370 0.630 33 H 0.273 0.727 34 H 0.027 0.973 35 H 0.116 0.884 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 16.508 -6.959 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.105 0.895 4 C -0.065 4.065 5 N -0.239 5.239 6 C -0.087 4.087 7 C 0.238 3.762 8 O -0.440 6.440 9 N -0.230 5.230 10 C -0.433 4.433 11 H 0.138 0.862 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.705 3.295 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.068 4.068 19 C -0.048 4.048 20 H 0.128 0.872 21 C -0.198 4.198 22 C -0.041 4.041 23 N -0.085 5.085 24 O -0.327 6.327 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.203 0.797 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.922 15.905 -7.924 18.438 hybrid contribution 1.614 0.981 1.769 2.587 sum 6.536 16.886 -6.155 19.124 Atomic orbital electron populations 1.21640 0.92530 1.03725 1.01103 1.20922 0.98088 0.98738 0.92447 0.89476 1.22159 0.97735 0.88912 0.97670 1.61282 1.58991 1.00634 1.03039 1.21868 0.98971 0.95470 0.92404 1.19622 0.85686 0.86117 0.84760 1.90524 1.44809 1.76005 1.32674 1.42218 1.50768 1.15004 1.15012 1.19423 1.31625 0.87997 1.04236 0.86203 1.25032 0.97676 0.95447 0.97963 1.69616 1.44085 1.07103 1.31321 0.86688 0.80190 0.78982 0.83612 1.19612 1.20225 1.19537 1.22408 0.94408 1.01828 0.88178 1.20392 1.02643 0.85586 0.96148 0.87173 1.21686 0.99669 1.01077 0.97364 1.25558 0.90195 0.96932 0.91445 1.76106 1.17768 0.90432 1.24208 1.88427 1.80826 1.13864 1.49608 0.92227 0.93456 0.90299 0.89935 0.95039 0.89032 0.93306 0.79736 0.91617 0.95459 0.86605 0.92706 0.91633 0.91832 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.05 37.16 0.34 -1.26 16 2 C -0.08 -1.01 2.95 -91.25 -0.27 -1.28 16 3 H 0.09 1.09 7.04 -51.93 -0.37 0.73 16 4 C 0.06 0.80 4.90 -3.71 -0.02 0.79 16 5 N -0.52 -7.81 3.84 -235.80 -0.90 -8.72 16 6 C 0.04 0.70 5.45 -4.98 -0.03 0.68 16 7 C 0.45 9.76 7.42 -10.98 -0.08 9.68 16 8 O -0.56 -14.00 13.90 5.54 0.08 -13.92 16 9 N -0.59 -13.59 5.09 -10.97 -0.06 -13.64 16 10 C -0.30 -8.38 10.16 -14.94 -0.15 -8.53 16 11 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.39 13.96 55.50 0.77 -24.61 16 14 Si 0.88 19.03 27.73 -169.99 -4.71 14.32 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 18 C 0.06 0.92 4.43 -3.71 -0.02 0.90 16 19 C -0.03 -0.38 2.93 -91.26 -0.27 -0.65 16 20 H 0.11 1.57 7.90 -51.93 -0.41 1.16 16 21 C -0.14 -1.69 8.67 37.16 0.32 -1.37 16 22 C 0.15 2.04 5.79 -78.21 -0.45 1.59 16 23 N -0.34 -4.60 10.87 35.93 0.39 -4.21 16 24 O -0.42 -4.98 13.63 -11.47 -0.16 -5.13 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.09 7.39 -51.93 -0.38 0.70 16 28 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 29 H 0.03 0.39 8.10 -51.92 -0.42 -0.03 16 30 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 31 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.37 7.49 5.77 -40.82 -0.24 7.26 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.03 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.12 2.10 5.71 -51.93 -0.30 1.81 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.06 0.74 7.81 -51.93 -0.41 0.33 16 39 H 0.40 2.79 9.28 45.56 0.42 3.21 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -31.95 316.38 -5.55 -37.50 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.01 Total: 12.08 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.72 Total: 1.58 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.21 Total: -51.18 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.08 Total: -19.05 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.95 -5.55 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696567583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.341 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds