Wall clock time and date at job start Mon Mar 30 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.70494 * 2 1 4 4 C 1.53300 * 109.70800 * 120.58897 * 2 1 3 5 5 N 1.46827 * 109.40020 * 65.89445 * 4 2 1 6 6 C 1.46901 * 110.99807 * 189.75238 * 5 4 2 7 7 C 1.50699 * 109.47228 * 170.00349 * 6 5 4 8 8 O 1.21295 * 119.99765 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00039 * 180.02562 * 7 6 5 10 10 C 1.37094 * 119.99615 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00377 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99616 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00276 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00316 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47301 * 89.99774 * 14 12 10 16 16 H 1.48504 * 109.47635 * 210.00387 * 14 12 10 17 17 H 1.48506 * 109.47211 * 330.00021 * 14 12 10 18 18 C 1.46826 * 111.56624 * 65.38713 * 5 4 2 19 19 C 1.53299 * 109.39885 * 294.61266 * 18 5 4 20 20 H 1.09002 * 109.70539 * 294.10819 * 19 18 5 21 21 C 1.52999 * 109.70981 * 173.48174 * 19 18 5 22 22 C 1.51431 * 108.24377 * 53.79374 * 19 18 5 23 23 N 1.27956 * 121.11082 * 130.95342 * 22 19 18 24 24 O 1.41599 * 119.99602 * 174.61468 * 23 22 19 25 25 H 1.08995 * 109.46782 * 299.41123 * 1 2 3 26 26 H 1.08996 * 109.46938 * 59.41496 * 1 2 3 27 27 H 1.09000 * 109.46698 * 179.41288 * 1 2 3 28 28 H 1.08994 * 109.48327 * 305.91164 * 4 2 1 29 29 H 1.09011 * 109.47910 * 185.87382 * 4 2 1 30 30 H 1.09003 * 109.47315 * 49.99555 * 6 5 4 31 31 H 1.09003 * 109.47008 * 290.00187 * 6 5 4 32 32 H 0.96999 * 119.99911 * 0.26893 * 9 7 6 33 33 H 0.97000 * 120.00940 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.48412 * 54.58741 * 18 5 4 35 35 H 1.08998 * 109.48126 * 174.63319 * 18 5 4 36 36 H 1.09003 * 109.47298 * 305.80578 * 21 19 18 37 37 H 1.09008 * 109.47309 * 65.80601 * 21 19 18 38 38 H 1.08998 * 109.47025 * 185.80722 * 21 19 18 39 39 H 0.96708 * 113.99483 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7344 1.2424 5 7 1.6790 -2.1533 1.1585 6 6 1.9500 -2.8433 2.4268 7 6 1.3404 -4.2210 2.3895 8 8 0.7389 -4.5915 1.4034 9 7 1.4627 -5.0410 3.4521 10 6 0.9077 -6.2941 3.4182 11 1 0.3721 -6.6240 2.5403 12 6 1.0342 -7.1397 4.5134 13 7 0.5018 -8.3408 4.4813 14 14 1.9610 -6.5695 6.0317 15 1 1.0180 -5.9056 6.9671 16 1 2.5813 -7.7405 6.7021 17 1 3.0210 -5.6088 5.6328 18 6 2.3570 -2.8216 0.0407 19 6 1.8610 -2.2289 -1.2832 20 1 0.8065 -2.4680 -1.4209 21 6 2.6768 -2.8029 -2.4433 22 6 2.0407 -0.7263 -1.2268 23 7 2.6056 -0.0916 -2.1836 24 8 2.6599 1.3231 -2.1598 25 1 -0.3633 0.5046 0.8952 26 1 -0.3633 0.5229 -0.8847 27 1 -0.3633 -1.0276 -0.0105 28 1 1.6022 -0.2956 2.1354 29 1 3.1320 -0.6426 1.2937 30 1 1.5150 -2.2756 3.2494 31 1 3.0270 -2.9263 2.5723 32 1 1.9397 -4.7430 4.2423 33 1 0.5897 -8.9310 5.2460 34 1 3.4332 -2.6710 0.1259 35 1 2.1357 -3.8886 0.0669 36 1 3.7385 -2.6421 -2.2555 37 1 2.4812 -3.8717 -2.5313 38 1 2.3921 -2.3039 -3.3696 39 1 3.1061 1.7125 -2.9243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696567583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:17 Heat of formation + Delta-G solvation = -47.771751 kcal Electronic energy + Delta-G solvation = -21232.873870 eV Core-core repulsion = 17983.246830 eV Total energy + Delta-G solvation = -3249.627040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.02136 -39.79095 -37.58233 -35.99232 -35.33537 -34.37961 -33.69390 -31.61427 -29.17535 -27.72458 -26.70769 -25.06271 -23.43825 -22.26827 -21.20491 -20.15740 -19.81962 -18.05751 -17.31646 -17.16260 -16.75996 -16.53955 -15.87463 -15.76248 -15.42655 -15.09681 -14.96826 -14.94049 -14.39007 -14.04272 -13.81354 -13.67209 -13.34672 -13.19577 -13.01449 -12.65024 -12.48195 -12.38754 -12.35839 -12.24283 -12.02072 -11.95474 -11.62060 -11.39221 -10.65278 -10.50097 -10.24703 -10.16854 -9.19322 -8.36874 -5.96823 0.97980 1.32980 1.38410 1.46783 2.01900 2.14156 2.26351 2.59745 3.18155 3.22942 3.39466 3.82771 3.93705 4.00200 4.15446 4.25071 4.27130 4.40493 4.45741 4.50614 4.65542 4.70717 4.74909 4.84267 4.89232 5.03847 5.05612 5.10282 5.19303 5.27459 5.46425 5.57538 5.83537 5.97838 6.06912 6.17956 6.64850 6.86273 6.94202 7.45989 8.03210 8.80755 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035647 B = 0.004262 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.289661 B = 6568.724704 C = 6886.327359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 H 0.093 0.907 4 C 0.068 3.932 5 N -0.531 5.531 6 C 0.055 3.945 7 C 0.453 3.547 8 O -0.600 6.600 9 N -0.594 5.594 10 C -0.323 4.323 11 H 0.057 0.943 12 C -0.016 4.016 13 N -0.937 5.937 14 Si 0.962 3.038 15 H -0.258 1.258 16 H -0.278 1.278 17 H -0.231 1.231 18 C 0.066 3.934 19 C -0.025 4.025 20 H 0.096 0.904 21 C -0.134 4.134 22 C 0.143 3.857 23 N -0.350 5.350 24 O -0.423 6.423 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.041 0.959 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.389 0.611 33 H 0.278 0.722 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.654 19.697 -5.379 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.098 4.098 3 H 0.111 0.889 4 C -0.060 4.060 5 N -0.256 5.256 6 C -0.076 4.076 7 C 0.241 3.759 8 O -0.483 6.483 9 N -0.236 5.236 10 C -0.452 4.452 11 H 0.076 0.924 12 C -0.214 4.214 13 N -0.578 5.578 14 Si 0.783 3.217 15 H -0.182 1.182 16 H -0.204 1.204 17 H -0.154 1.154 18 C -0.063 4.063 19 C -0.045 4.045 20 H 0.114 0.886 21 C -0.192 4.192 22 C -0.050 4.050 23 N -0.091 5.091 24 O -0.333 6.333 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.059 0.941 30 H 0.143 0.857 31 H 0.095 0.905 32 H 0.224 0.776 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 6.896 19.129 -6.375 21.310 hybrid contribution 0.942 0.036 1.073 1.428 sum 7.838 19.164 -5.302 21.373 Atomic orbital electron populations 1.21576 0.92508 1.02459 1.01891 1.20918 0.98008 0.98813 0.92053 0.88851 1.22224 0.98513 0.86786 0.98517 1.61226 1.59727 1.02086 1.02545 1.21819 1.00167 0.91695 0.93912 1.20833 0.83913 0.87859 0.83282 1.90522 1.46207 1.77383 1.34233 1.42044 1.51454 1.13683 1.16414 1.18995 1.32683 0.90619 1.02927 0.92450 1.26071 0.98409 0.95012 1.01916 1.69803 1.46041 1.08983 1.32958 0.85397 0.79429 0.79222 0.77672 1.18236 1.20374 1.15431 1.22224 0.94973 0.99849 0.89246 1.20262 1.01950 0.86418 0.95868 0.88634 1.21634 0.99587 1.00916 0.97037 1.25481 0.90796 0.96562 0.92144 1.76008 1.17388 0.91565 1.24166 1.88394 1.81184 1.12625 1.51099 0.90703 0.93456 0.92488 0.87718 0.94058 0.85671 0.90524 0.77613 0.91299 0.94460 0.90298 0.92355 0.91865 0.91381 0.73353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.05 71.98 0.65 -2.17 16 2 C -0.08 -1.73 2.95 -11.20 -0.03 -1.76 16 3 H 0.09 2.03 7.04 -2.39 -0.02 2.01 16 4 C 0.07 1.45 4.90 86.42 0.42 1.88 16 5 N -0.53 -15.05 3.84 -899.95 -3.45 -18.50 16 6 C 0.05 1.58 5.45 85.56 0.47 2.05 16 7 C 0.45 19.44 7.42 87.66 0.65 20.09 16 8 O -0.60 -31.33 13.90 -3.08 -0.04 -31.37 16 9 N -0.59 -27.02 5.09 -306.99 -1.56 -28.58 16 10 C -0.32 -18.49 10.16 84.04 0.85 -17.63 16 11 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 12 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 13 N -0.94 -56.06 13.96 21.66 0.30 -55.76 16 14 Si 0.96 38.18 27.73 68.60 1.90 40.09 16 15 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 16 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 18 C 0.07 1.97 4.43 86.42 0.38 2.35 16 19 C -0.03 -0.68 2.93 -11.21 -0.03 -0.71 16 20 H 0.10 2.83 7.90 -2.39 -0.02 2.81 16 21 C -0.13 -3.21 8.67 71.98 0.62 -2.58 16 22 C 0.14 3.62 5.79 47.01 0.27 3.89 16 23 N -0.35 -8.69 10.87 -40.10 -0.44 -9.13 16 24 O -0.42 -8.83 13.63 -38.78 -0.53 -9.36 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.53 7.39 -2.39 -0.02 1.52 16 28 H 0.10 1.81 7.94 -2.39 -0.02 1.79 16 29 H 0.04 0.84 8.10 -2.38 -0.02 0.82 16 30 H 0.13 2.84 7.93 -2.39 -0.02 2.82 16 31 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 32 H 0.39 14.60 5.77 -92.71 -0.53 14.06 16 33 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 35 H 0.08 2.97 5.71 -2.39 -0.01 2.95 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.07 1.55 7.81 -2.39 -0.02 1.53 16 39 H 0.42 4.72 9.28 -74.05 -0.69 4.03 16 Total: -1.00 -73.92 316.38 0.70 -73.22 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.21 Total: 34.39 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.73 Total: 5.00 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -5.15 Total: -111.97 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.57 Total: -40.74 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.09 kcal Total: -73.92 0.70 -73.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696567583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.453 kcal (2) G-P(sol) polarization free energy of solvation -73.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds