Wall clock time and date at job start Mon Mar 30 2020 04:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47100 * 2 1 4 4 C 1.34225 * 117.00024 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00017 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00333 * 180.02562 * 4 3 2 7 7 C 1.50701 * 115.54744 * 325.58825 * 6 4 3 8 8 O 1.20761 * 119.99952 * 214.41322 * 7 6 4 9 9 C 1.50703 * 120.00152 * 34.41169 * 7 6 4 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.46902 * 111.00255 * 293.95458 * 10 9 7 12 12 C 1.46901 * 111.00103 * 169.99758 * 10 9 7 13 13 C 1.50696 * 109.47399 * 190.00043 * 12 10 9 14 14 H 1.08005 * 119.99725 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99750 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99818 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46963 * 90.00024 * 17 15 13 19 19 H 1.48502 * 109.47084 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.47321 * 330.00380 * 17 15 13 21 21 C 1.53006 * 117.49875 * 111.24991 * 6 4 3 22 22 C 1.52994 * 117.50196 * 179.91414 * 6 4 3 23 23 H 1.09002 * 109.47134 * 299.99706 * 1 2 3 24 24 H 1.08999 * 109.47584 * 59.99923 * 1 2 3 25 25 H 1.09007 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46808 * 239.99657 * 2 1 3 27 27 H 1.09007 * 109.47000 * 120.00240 * 2 1 3 28 28 H 1.09002 * 109.47152 * 60.00224 * 9 7 6 29 29 H 1.09001 * 109.46980 * 300.00325 * 9 7 6 30 30 H 1.09005 * 109.46528 * 59.99744 * 11 10 9 31 31 H 1.09000 * 109.46785 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47044 * 300.00388 * 11 10 9 33 33 H 1.08998 * 109.47407 * 310.00536 * 12 10 9 34 34 H 1.09007 * 109.46608 * 69.99971 * 12 10 9 35 35 H 0.97008 * 119.99731 * 179.97438 * 16 15 13 36 36 H 1.09003 * 117.49661 * 215.00572 * 21 6 4 37 37 H 1.08998 * 117.49670 * 0.03185 * 21 6 4 38 38 H 1.08999 * 117.49722 * 359.97438 * 22 6 4 39 39 H 1.08993 * 117.50145 * 145.00008 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 3.1329 3.9669 -0.7672 8 8 3.7073 4.8538 -1.3520 9 6 1.6284 3.8898 -0.8059 10 7 1.1019 4.9979 -1.6139 11 6 1.3690 6.2915 -0.9711 12 6 -0.3338 4.8251 -1.8726 13 6 -0.7849 5.8343 -2.8967 14 1 -0.0757 6.5339 -3.3141 15 6 -2.1027 5.8646 -3.3009 16 7 -2.4961 6.7451 -4.1951 17 14 -3.3289 4.6542 -2.5795 18 1 -3.9472 5.2413 -1.3637 19 1 -4.3858 4.3639 -3.5815 20 1 -2.6285 3.3951 -2.2198 21 6 4.6449 3.4018 1.2665 22 6 5.4448 3.0715 0.0038 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.2347 3.9600 0.2081 29 1 1.3245 2.9413 -1.2488 30 1 2.4447 6.4240 -0.8547 31 1 0.9692 7.0944 -1.5904 32 1 0.8919 6.3158 0.0086 33 1 -0.5167 3.8187 -2.2491 34 1 -0.8901 4.9732 -0.9469 35 1 -3.4232 6.7662 -4.4798 36 1 4.5515 4.4520 1.5430 37 1 4.7050 2.6999 2.0982 38 1 6.0308 2.1524 0.0055 39 1 5.8777 3.9043 -0.5502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699369898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:16 Heat of formation + Delta-G solvation = -79.604503 kcal Electronic energy + Delta-G solvation = -21287.675100 eV Core-core repulsion = 18004.374937 eV Total energy + Delta-G solvation = -3283.300163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.13034 -39.52047 -37.41976 -36.23233 -35.67804 -32.45742 -31.90748 -29.27095 -27.65044 -25.91267 -24.10918 -23.12742 -22.79662 -21.75363 -20.18395 -19.57534 -17.76367 -17.03600 -16.86467 -16.58695 -15.74156 -15.06270 -14.82696 -14.51709 -14.23049 -14.13060 -14.03989 -13.62698 -13.20479 -12.96066 -12.50794 -12.20805 -12.16090 -11.88072 -11.76425 -11.69970 -11.53749 -11.18447 -11.01021 -10.81651 -10.75266 -10.66626 -10.63832 -10.45866 -9.87516 -9.42751 -9.13705 -8.57602 -7.40417 -6.04192 -4.01516 1.65342 2.06776 2.42869 3.27073 3.34563 3.35640 3.40955 3.69035 4.28855 4.33580 4.41560 4.51213 4.76279 4.79131 4.90653 5.07508 5.11670 5.21829 5.28111 5.44886 5.55298 5.59278 5.64384 5.69811 5.76503 5.85300 5.94527 6.16913 6.23438 6.25948 6.74263 6.84102 6.98655 7.48887 7.55144 7.63894 7.86503 8.04095 8.65872 9.05872 9.56813 11.09012 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.005860 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.728120 B = 4777.329711 C = 5989.175161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.062 3.938 3 O -0.344 6.344 4 C 0.510 3.490 5 O -0.504 6.504 6 C -0.208 4.208 7 C 0.396 3.604 8 O -0.418 6.418 9 C 0.013 3.987 10 N -0.521 5.521 11 C 0.030 3.970 12 C 0.164 3.836 13 C -0.509 4.509 14 H 0.082 0.918 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 C -0.120 4.120 22 C -0.118 4.118 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.008 0.992 33 H 0.029 0.971 34 H -0.014 1.014 35 H 0.263 0.737 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.535 -12.138 13.226 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.012 4.012 3 O -0.261 6.261 4 C 0.353 3.647 5 O -0.392 6.392 6 C -0.211 4.211 7 C 0.268 3.732 8 O -0.288 6.288 9 C -0.115 4.115 10 N -0.245 5.245 11 C -0.119 4.119 12 C 0.038 3.962 13 C -0.547 4.547 14 H 0.100 0.900 15 C -0.134 4.134 16 N -0.539 5.539 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.157 4.157 22 C -0.154 4.154 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.026 0.974 33 H 0.047 0.953 34 H 0.003 0.997 35 H 0.073 0.927 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.093 -11.910 12.334 20.421 hybrid contribution -1.373 -0.952 1.111 2.006 sum 9.720 -12.862 13.445 20.993 Atomic orbital electron populations 1.21851 0.92190 1.03088 1.04251 1.23116 0.95736 0.79726 1.02601 1.86607 1.23427 1.32634 1.83389 1.21892 0.80973 0.89770 0.72073 1.90655 1.60688 1.42120 1.45737 1.21785 0.97852 0.93025 1.08432 1.23575 0.91628 0.81894 0.76130 1.90376 1.72849 1.31616 1.33932 1.22477 0.91679 0.98822 0.98554 1.61827 1.18554 1.00192 1.43904 1.22406 1.00262 0.92919 0.96268 1.20217 0.82331 0.98133 0.95553 1.21036 0.94990 1.16650 1.22002 0.89994 1.24896 0.98075 0.95486 0.94895 1.69897 1.17030 1.35554 1.31403 0.86868 0.81454 0.82358 0.79096 1.20355 1.21155 1.19129 1.23139 0.98820 1.03529 0.90257 1.23196 0.87956 1.05085 0.99213 0.91295 0.90843 0.90137 0.90966 0.91187 0.92000 0.87007 0.92100 0.89976 0.97356 0.95327 0.99680 0.92668 0.86624 0.87067 0.86507 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.34 -4.36 7.12 -39.25 -0.28 -4.64 16 4 C 0.51 6.75 7.47 36.01 0.27 7.02 16 5 O -0.50 -7.34 16.01 -18.75 -0.30 -7.64 16 6 C -0.21 -2.61 2.53 -156.81 -0.40 -3.00 16 7 C 0.40 6.23 6.50 -29.03 -0.19 6.05 16 8 O -0.42 -7.62 14.21 6.00 0.09 -7.54 16 9 C 0.01 0.23 4.10 -4.98 -0.02 0.21 16 10 N -0.52 -11.32 4.49 -245.82 -1.10 -12.43 16 11 C 0.03 0.60 9.03 60.07 0.54 1.14 16 12 C 0.16 3.98 3.79 -4.98 -0.02 3.96 16 13 C -0.51 -14.59 9.01 -34.44 -0.31 -14.90 16 14 H 0.08 2.58 7.37 -52.48 -0.39 2.20 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 17 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 21 C -0.12 -1.10 9.94 -26.69 -0.27 -1.37 16 22 C -0.12 -1.22 9.56 -26.69 -0.26 -1.47 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 28 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 29 H 0.11 1.89 6.21 -51.93 -0.32 1.57 16 30 H 0.06 1.15 5.89 -51.93 -0.31 0.85 16 31 H 0.08 1.85 6.76 -51.93 -0.35 1.49 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16 34 H -0.01 -0.34 7.55 -51.93 -0.39 -0.74 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.12 1.13 7.67 -51.93 -0.40 0.73 16 39 H 0.12 1.26 7.67 -51.93 -0.40 0.86 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -33.23 325.54 -6.60 -39.83 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.89 Total: -1.51 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.13 Total: -0.66 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.33 Total: -39.30 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.49 Total: -19.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.23 -6.60 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699369898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.773 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds