Wall clock time and date at job start Mon Mar 30 2020 04:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47100 * 2 1 4 4 C 1.34225 * 117.00024 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00017 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00333 * 180.02562 * 4 3 2 7 7 C 1.50701 * 115.54744 * 325.58825 * 6 4 3 8 8 O 1.20761 * 119.99952 * 214.41322 * 7 6 4 9 9 C 1.50703 * 120.00152 * 34.41169 * 7 6 4 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 6 11 11 C 1.46902 * 111.00255 * 293.95458 * 10 9 7 12 12 C 1.46901 * 111.00103 * 169.99758 * 10 9 7 13 13 C 1.50696 * 109.47399 * 190.00043 * 12 10 9 14 14 H 1.08005 * 119.99725 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99750 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99818 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46963 * 90.00024 * 17 15 13 19 19 H 1.48502 * 109.47084 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.47321 * 330.00380 * 17 15 13 21 21 C 1.53006 * 117.49875 * 111.24991 * 6 4 3 22 22 C 1.52994 * 117.50196 * 179.91414 * 6 4 3 23 23 H 1.09002 * 109.47134 * 299.99706 * 1 2 3 24 24 H 1.08999 * 109.47584 * 59.99923 * 1 2 3 25 25 H 1.09007 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46808 * 239.99657 * 2 1 3 27 27 H 1.09007 * 109.47000 * 120.00240 * 2 1 3 28 28 H 1.09002 * 109.47152 * 60.00224 * 9 7 6 29 29 H 1.09001 * 109.46980 * 300.00325 * 9 7 6 30 30 H 1.09005 * 109.46528 * 59.99744 * 11 10 9 31 31 H 1.09000 * 109.46785 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47044 * 300.00388 * 11 10 9 33 33 H 1.08998 * 109.47407 * 310.00536 * 12 10 9 34 34 H 1.09007 * 109.46608 * 69.99971 * 12 10 9 35 35 H 0.97008 * 119.99731 * 179.97438 * 16 15 13 36 36 H 1.09003 * 117.49661 * 215.00572 * 21 6 4 37 37 H 1.08998 * 117.49670 * 0.03185 * 21 6 4 38 38 H 1.08999 * 117.49722 * 359.97438 * 22 6 4 39 39 H 1.08993 * 117.50145 * 145.00008 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 6 3.1329 3.9669 -0.7672 8 8 3.7073 4.8538 -1.3520 9 6 1.6284 3.8898 -0.8059 10 7 1.1019 4.9979 -1.6139 11 6 1.3690 6.2915 -0.9711 12 6 -0.3338 4.8251 -1.8726 13 6 -0.7849 5.8343 -2.8967 14 1 -0.0757 6.5339 -3.3141 15 6 -2.1027 5.8646 -3.3009 16 7 -2.4961 6.7451 -4.1951 17 14 -3.3289 4.6542 -2.5795 18 1 -3.9472 5.2413 -1.3637 19 1 -4.3858 4.3639 -3.5815 20 1 -2.6285 3.3951 -2.2198 21 6 4.6449 3.4018 1.2665 22 6 5.4448 3.0715 0.0038 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.2347 3.9600 0.2081 29 1 1.3245 2.9413 -1.2488 30 1 2.4447 6.4240 -0.8547 31 1 0.9692 7.0944 -1.5904 32 1 0.8919 6.3158 0.0086 33 1 -0.5167 3.8187 -2.2491 34 1 -0.8901 4.9732 -0.9469 35 1 -3.4232 6.7662 -4.4798 36 1 4.5515 4.4520 1.5430 37 1 4.7050 2.6999 2.0982 38 1 6.0308 2.1524 0.0055 39 1 5.8777 3.9043 -0.5502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699369898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:15 Heat of formation + Delta-G solvation = -101.769782 kcal Electronic energy + Delta-G solvation = -21288.636258 eV Core-core repulsion = 18004.374937 eV Total energy + Delta-G solvation = -3284.261322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.14270 -40.70912 -38.48434 -37.66793 -36.79248 -34.60998 -32.68564 -30.86021 -29.40295 -27.14848 -25.65945 -24.07938 -23.59670 -22.99306 -21.85084 -20.61968 -19.08740 -18.76979 -17.88391 -17.71303 -16.86137 -16.54790 -16.30509 -15.93349 -15.75113 -15.37978 -15.12085 -14.96555 -14.53179 -14.14771 -13.82074 -13.63826 -13.47714 -13.03140 -12.90129 -12.70464 -12.59470 -12.57324 -12.51735 -12.37357 -12.24173 -11.80883 -11.71862 -11.61013 -11.54390 -11.46591 -10.77912 -10.57320 -9.06578 -8.26498 -6.31010 0.60042 0.99799 1.36506 1.39309 1.50290 1.50833 2.36760 2.51867 2.54356 3.06263 3.32075 3.36609 3.53813 3.70193 4.02370 4.05672 4.10950 4.31481 4.35296 4.48307 4.53244 4.54403 4.56837 4.62279 4.79253 4.85256 4.90221 4.93245 5.01131 5.03174 5.12969 5.19938 5.39050 5.52589 5.93655 6.21953 6.43742 6.55975 6.63492 6.75436 7.32342 8.90470 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.005860 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.728120 B = 4777.329711 C = 5989.175161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.353 6.353 4 C 0.513 3.487 5 O -0.521 6.521 6 C -0.226 4.226 7 C 0.403 3.597 8 O -0.451 6.451 9 C 0.012 3.988 10 N -0.547 5.547 11 C 0.038 3.962 12 C 0.175 3.825 13 C -0.521 4.521 14 H 0.032 0.968 15 C 0.005 3.995 16 N -0.950 5.950 17 Si 0.950 3.050 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.241 1.241 21 C -0.093 4.093 22 C -0.114 4.114 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.027 0.973 33 H 0.035 0.965 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.512 -14.409 15.785 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.270 6.270 4 C 0.357 3.643 5 O -0.411 6.411 6 C -0.229 4.229 7 C 0.278 3.722 8 O -0.323 6.323 9 C -0.116 4.116 10 N -0.271 5.271 11 C -0.110 4.110 12 C 0.048 3.952 13 C -0.559 4.559 14 H 0.050 0.950 15 C -0.192 4.192 16 N -0.591 5.591 17 Si 0.773 3.227 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.164 1.164 21 C -0.130 4.130 22 C -0.151 4.151 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.089 -14.193 14.914 23.385 hybrid contribution -1.291 -0.204 0.278 1.337 sum 9.797 -14.397 15.192 23.110 Atomic orbital electron populations 1.21875 0.91186 1.04446 1.03505 1.23344 0.96504 0.78740 1.03164 1.86587 1.23134 1.34122 1.83129 1.21946 0.81061 0.89732 0.71559 1.90647 1.61044 1.42574 1.46787 1.21645 0.98560 0.91770 1.10884 1.23600 0.91042 0.82018 0.75560 1.90374 1.73160 1.33321 1.35463 1.22577 0.92994 0.97040 0.98991 1.61663 1.17077 1.01994 1.46355 1.22274 1.01006 0.91523 0.96165 1.19969 0.84173 0.96627 0.94444 1.21267 0.94583 1.16951 1.23081 0.94984 1.25916 1.00421 0.97656 0.95166 1.70070 1.17819 1.37897 1.33312 0.85670 0.78285 0.80320 0.78427 1.19052 1.20856 1.16385 1.23384 0.95280 1.04740 0.89583 1.23287 0.86343 1.05403 1.00036 0.91011 0.92461 0.87811 0.91200 0.89879 0.89710 0.86643 0.90801 0.93452 0.95483 0.94713 0.98632 0.92429 0.85419 0.84802 0.85736 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.29 71.98 0.74 -1.63 16 2 C 0.06 1.01 6.19 71.98 0.45 1.45 16 3 O -0.35 -8.16 7.12 -51.37 -0.37 -8.53 16 4 C 0.51 12.47 7.47 71.24 0.53 13.00 16 5 O -0.52 -14.11 16.01 21.96 0.35 -13.76 16 6 C -0.23 -5.14 2.53 -53.67 -0.14 -5.28 16 7 C 0.40 12.13 6.50 29.10 0.19 12.32 16 8 O -0.45 -16.20 14.21 -1.45 -0.02 -16.22 16 9 C 0.01 0.39 4.10 85.56 0.35 0.74 16 10 N -0.55 -23.59 4.49 -931.63 -4.18 -27.78 16 11 C 0.04 1.57 9.03 127.69 1.15 2.72 16 12 C 0.17 8.36 3.79 85.56 0.32 8.68 16 13 C -0.52 -30.71 9.01 25.60 0.23 -30.48 16 14 H 0.03 2.14 7.37 -2.91 -0.02 2.12 16 15 C 0.01 0.31 5.47 84.66 0.46 0.78 16 16 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 17 Si 0.95 43.18 27.47 68.60 1.88 45.07 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 21 C -0.09 -1.39 9.94 30.62 0.30 -1.08 16 22 C -0.11 -2.09 9.56 30.62 0.29 -1.80 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 27 H 0.08 1.29 8.13 -2.38 -0.02 1.27 16 28 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 29 H 0.12 3.70 6.21 -2.39 -0.01 3.69 16 30 H 0.07 2.79 5.89 -2.38 -0.01 2.78 16 31 H 0.05 2.22 6.76 -2.39 -0.02 2.21 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.03 1.62 6.99 -2.39 -0.02 1.60 16 34 H 0.00 -0.18 7.55 -2.38 -0.02 -0.20 16 35 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 36 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.13 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.12 2.11 7.67 -2.39 -0.02 2.10 16 39 H 0.12 2.27 7.67 -2.39 -0.02 2.25 16 Total: -1.00 -73.86 325.54 3.84 -70.02 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.98 Total: 11.62 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 4.89 Total: -0.58 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -3.88 Total: -87.61 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.03 Total: -38.51 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.07 kcal Total: -73.86 3.84 -70.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699369898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.750 kcal (2) G-P(sol) polarization free energy of solvation -73.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds