Wall clock time and date at job start Mon Mar 30 2020 05:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00393 * 2 1 4 4 C 1.53003 * 109.47185 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47034 * 63.99836 * 4 3 2 6 6 C 1.46906 * 110.99922 * 76.18252 * 5 4 3 7 7 C 1.50706 * 109.46912 * 196.68940 * 6 5 4 8 8 H 1.07999 * 119.99799 * 355.49280 * 7 6 5 9 9 C 1.37870 * 119.99897 * 175.49689 * 7 6 5 10 10 N 1.31522 * 119.99978 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00052 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46876 * 60.00273 * 11 9 7 13 13 H 1.48501 * 109.47261 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47187 * 300.00074 * 11 9 7 15 15 C 1.46899 * 110.99974 * 200.13636 * 5 4 3 16 16 C 1.50701 * 109.47115 * 66.04569 * 15 5 4 17 17 O 1.34363 * 126.81915 * 269.68643 * 16 15 5 18 18 N 1.20896 * 111.61109 * 179.82692 * 17 16 15 19 19 C 1.30189 * 111.73826 * 0.45133 * 18 17 16 20 20 C 1.50696 * 126.80441 * 179.74210 * 19 18 17 21 21 C 1.35826 * 126.81908 * 89.99692 * 16 15 5 22 22 N 1.40709 * 128.05438 * 0.02562 * 21 16 15 23 23 H 1.08998 * 109.46627 * 300.00094 * 1 2 3 24 24 H 1.09002 * 109.46924 * 59.99775 * 1 2 3 25 25 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47073 * 60.00017 * 3 2 1 27 27 H 1.08994 * 109.46878 * 300.00409 * 3 2 1 28 28 H 1.08999 * 109.46838 * 303.99725 * 4 3 2 29 29 H 1.09003 * 109.46686 * 183.99691 * 4 3 2 30 30 H 1.08996 * 109.46797 * 316.68295 * 6 5 4 31 31 H 1.08998 * 109.47128 * 76.68629 * 6 5 4 32 32 H 0.97003 * 119.99881 * 179.97438 * 10 9 7 33 33 H 1.08995 * 109.46856 * 186.04580 * 15 5 4 34 34 H 1.08999 * 109.46870 * 306.04632 * 15 5 4 35 35 H 1.08999 * 109.47696 * 269.97469 * 20 19 18 36 36 H 1.09001 * 109.47146 * 29.97651 * 20 19 18 37 37 H 1.09003 * 109.47362 * 149.97475 * 20 19 18 38 38 H 0.97003 * 120.00440 * 359.97438 * 22 21 16 39 39 H 0.97003 * 120.00320 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9762 0.5403 -1.2439 6 6 3.9174 1.4793 -2.3722 7 6 3.9716 0.7116 -3.6679 8 1 4.1158 -0.3587 -3.6558 9 6 3.8371 1.3756 -4.8687 10 7 3.6610 2.6789 -4.8833 11 14 3.9050 0.4241 -6.4748 12 1 2.8156 -0.5849 -6.4988 13 1 3.7354 1.3622 -7.6134 14 1 5.2174 -0.2614 -6.5889 15 6 5.3254 -0.0218 -1.0966 16 6 5.2928 -1.1518 -0.1000 17 8 5.4840 -1.0610 1.2268 18 7 5.3939 -2.1400 1.7645 19 6 5.1464 -3.0872 0.9064 20 6 4.9748 -4.5542 1.2054 21 6 5.0699 -2.4651 -0.3655 22 7 4.8220 -3.0680 -1.6125 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8520 0.5832 0.8529 29 1 3.9787 2.1779 0.0723 30 1 2.9878 2.0465 -2.3246 31 1 4.7639 2.1639 -2.3197 32 1 3.5668 3.1460 -5.7282 33 1 5.6698 -0.3970 -2.0602 34 1 6.0056 0.7537 -0.7444 35 1 5.9422 -5.0529 1.1460 36 1 4.5647 -4.6751 2.2081 37 1 4.2931 -4.9960 0.4785 38 1 4.7954 -2.5260 -2.4166 39 1 4.6778 -4.0256 -1.6682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699997055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:35 Heat of formation + Delta-G solvation = 19.413512 kcal Electronic energy + Delta-G solvation = -21519.830519 eV Core-core repulsion = 18273.116850 eV Total energy + Delta-G solvation = -3246.713669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.30103 -37.78653 -36.35193 -35.49086 -33.01520 -32.49743 -30.43038 -29.25899 -28.34268 -26.98034 -25.96054 -24.46699 -22.49081 -21.83013 -20.37699 -19.55874 -17.18895 -17.11485 -16.51788 -16.04451 -15.62896 -15.52576 -15.01931 -14.83067 -14.42820 -13.91105 -13.59061 -13.23770 -13.04400 -12.89818 -12.78571 -12.10507 -11.98543 -11.76212 -11.38993 -11.28695 -11.20944 -11.12625 -10.74056 -10.71355 -10.51128 -10.32703 -9.85325 -9.35846 -9.18567 -9.07868 -8.45957 -7.37846 -7.19450 -6.05938 -4.07191 1.98683 2.84050 3.29684 3.34951 3.36447 3.56212 4.26578 4.32998 4.39680 4.68796 4.81964 4.98075 5.30370 5.39719 5.53223 5.53587 5.56838 5.66923 5.74390 5.81076 5.84508 5.90996 5.96881 6.10748 6.17019 6.22374 6.36296 6.41480 6.47273 7.16466 7.25894 7.67068 7.72186 7.80468 8.05204 8.12885 8.16342 8.49659 8.77148 8.98670 9.56631 11.04629 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.006638 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.276720 B = 4217.336254 C = 5059.185347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.072 3.928 4 C 0.053 3.947 5 N -0.520 5.520 6 C 0.191 3.809 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.155 3.845 16 C -0.099 4.099 17 O 0.099 5.901 18 N -0.361 5.361 19 C -0.029 4.029 20 C -0.065 4.065 21 C 0.112 3.888 22 N -0.849 5.849 23 H 0.029 0.971 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.037 0.963 31 H -0.009 1.009 32 H 0.262 0.738 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -8.525 8.827 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.005 4.005 4 C -0.076 4.076 5 N -0.245 5.245 6 C 0.067 3.933 7 C -0.542 4.542 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C 0.026 3.974 16 C -0.168 4.168 17 O 0.031 5.969 18 N -0.065 5.065 19 C -0.190 4.190 20 C -0.123 4.123 21 C 0.005 3.995 22 N -0.397 5.397 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.241 0.759 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.193 -8.861 10.016 13.374 hybrid contribution -0.047 0.162 -1.913 1.921 sum -0.240 -8.698 8.103 11.890 Atomic orbital electron populations 1.22634 0.82734 1.01828 0.99188 1.88009 1.17974 1.27651 1.95129 1.22537 0.94023 0.84726 0.99216 1.22088 0.93512 0.97637 0.94337 1.62120 1.21650 1.37147 1.03604 1.19820 0.96565 0.89933 0.87027 1.21053 1.49031 0.94247 0.89836 0.92059 1.24966 0.95481 0.94864 0.99184 1.69939 1.49944 1.07348 1.26555 0.86599 0.78531 0.79625 0.82856 1.20247 1.21431 1.20280 1.20258 0.91654 0.91211 0.94257 1.23528 1.12838 0.96180 0.84301 1.84720 1.67504 1.25717 1.18963 1.73652 1.18894 0.91542 1.22400 1.23011 1.08731 0.97944 0.89305 1.19992 1.02230 0.87407 1.02672 1.18047 1.02349 0.91191 0.87921 1.41429 1.84091 1.09873 1.04270 0.95208 0.94288 0.90484 0.94421 0.92656 0.91131 0.93893 0.94548 0.99095 0.92865 0.87618 0.94233 0.90963 0.90928 0.90846 0.75900 0.77673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.09 10.64 -35.23 -0.37 -7.46 16 3 C 0.07 1.30 6.12 37.16 0.23 1.53 16 4 C 0.05 0.99 5.23 -3.82 -0.02 0.97 16 5 N -0.52 -10.90 4.30 -237.51 -1.02 -11.92 16 6 C 0.19 4.70 4.56 -4.97 -0.02 4.68 16 7 C -0.50 -13.26 8.54 -34.44 -0.29 -13.56 16 8 H 0.06 1.56 7.48 -52.49 -0.39 1.17 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 11 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.16 2.94 5.30 -4.98 -0.03 2.91 16 16 C -0.10 -1.78 6.10 -35.17 -0.21 -2.00 16 17 O 0.10 1.80 10.22 16.32 0.17 1.97 16 18 N -0.36 -6.37 12.06 33.56 0.40 -5.97 16 19 C -0.03 -0.47 7.34 -81.93 -0.60 -1.07 16 20 C -0.07 -0.74 10.48 36.00 0.38 -0.37 16 21 C 0.11 1.87 7.52 -83.28 -0.63 1.24 16 22 N -0.85 -12.12 9.19 32.62 0.30 -11.82 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.08 6.69 -51.93 -0.35 0.73 16 28 H 0.07 1.31 6.10 -51.93 -0.32 1.00 16 29 H 0.04 0.77 7.99 -51.93 -0.42 0.35 16 30 H 0.04 0.97 6.51 -51.93 -0.34 0.63 16 31 H -0.01 -0.23 8.04 -51.93 -0.42 -0.64 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.11 2.05 6.81 -51.93 -0.35 1.70 16 34 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.41 6.22 8.62 -40.82 -0.35 5.87 16 39 H 0.40 4.46 8.91 -40.82 -0.36 4.09 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -30.57 328.73 -5.85 -36.42 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.81 Total: 5.66 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.19 Total: -2.61 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.42 Total: -54.66 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.21 Total: -5.50 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.57 -5.85 -36.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699997055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.829 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds