Wall clock time and date at job start Mon Mar 30 2020 05:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00393 * 2 1 4 4 C 1.53003 * 109.47185 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47034 * 63.99836 * 4 3 2 6 6 C 1.46906 * 110.99922 * 76.18252 * 5 4 3 7 7 C 1.50706 * 109.46912 * 196.68940 * 6 5 4 8 8 H 1.07999 * 119.99799 * 355.49280 * 7 6 5 9 9 C 1.37870 * 119.99897 * 175.49689 * 7 6 5 10 10 N 1.31522 * 119.99978 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00052 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46876 * 60.00273 * 11 9 7 13 13 H 1.48501 * 109.47261 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47187 * 300.00074 * 11 9 7 15 15 C 1.46899 * 110.99974 * 200.13636 * 5 4 3 16 16 C 1.50701 * 109.47115 * 66.04569 * 15 5 4 17 17 O 1.34363 * 126.81915 * 269.68643 * 16 15 5 18 18 N 1.20896 * 111.61109 * 179.82692 * 17 16 15 19 19 C 1.30189 * 111.73826 * 0.45133 * 18 17 16 20 20 C 1.50696 * 126.80441 * 179.74210 * 19 18 17 21 21 C 1.35826 * 126.81908 * 89.99692 * 16 15 5 22 22 N 1.40709 * 128.05438 * 0.02562 * 21 16 15 23 23 H 1.08998 * 109.46627 * 300.00094 * 1 2 3 24 24 H 1.09002 * 109.46924 * 59.99775 * 1 2 3 25 25 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47073 * 60.00017 * 3 2 1 27 27 H 1.08994 * 109.46878 * 300.00409 * 3 2 1 28 28 H 1.08999 * 109.46838 * 303.99725 * 4 3 2 29 29 H 1.09003 * 109.46686 * 183.99691 * 4 3 2 30 30 H 1.08996 * 109.46797 * 316.68295 * 6 5 4 31 31 H 1.08998 * 109.47128 * 76.68629 * 6 5 4 32 32 H 0.97003 * 119.99881 * 179.97438 * 10 9 7 33 33 H 1.08995 * 109.46856 * 186.04580 * 15 5 4 34 34 H 1.08999 * 109.46870 * 306.04632 * 15 5 4 35 35 H 1.08999 * 109.47696 * 269.97469 * 20 19 18 36 36 H 1.09001 * 109.47146 * 29.97651 * 20 19 18 37 37 H 1.09003 * 109.47362 * 149.97475 * 20 19 18 38 38 H 0.97003 * 120.00440 * 359.97438 * 22 21 16 39 39 H 0.97003 * 120.00320 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9762 0.5403 -1.2439 6 6 3.9174 1.4793 -2.3722 7 6 3.9716 0.7116 -3.6679 8 1 4.1158 -0.3587 -3.6558 9 6 3.8371 1.3756 -4.8687 10 7 3.6610 2.6789 -4.8833 11 14 3.9050 0.4241 -6.4748 12 1 2.8156 -0.5849 -6.4988 13 1 3.7354 1.3622 -7.6134 14 1 5.2174 -0.2614 -6.5889 15 6 5.3254 -0.0218 -1.0966 16 6 5.2928 -1.1518 -0.1000 17 8 5.4840 -1.0610 1.2268 18 7 5.3939 -2.1400 1.7645 19 6 5.1464 -3.0872 0.9064 20 6 4.9748 -4.5542 1.2054 21 6 5.0699 -2.4651 -0.3655 22 7 4.8220 -3.0680 -1.6125 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8520 0.5832 0.8529 29 1 3.9787 2.1779 0.0723 30 1 2.9878 2.0465 -2.3246 31 1 4.7639 2.1639 -2.3197 32 1 3.5668 3.1460 -5.7282 33 1 5.6698 -0.3970 -2.0602 34 1 6.0056 0.7537 -0.7444 35 1 5.9422 -5.0529 1.1460 36 1 4.5647 -4.6751 2.2081 37 1 4.2931 -4.9960 0.4785 38 1 4.7954 -2.5260 -2.4166 39 1 4.6778 -4.0256 -1.6682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699997055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:35 Heat of formation + Delta-G solvation = -3.187681 kcal Electronic energy + Delta-G solvation = -21520.810580 eV Core-core repulsion = 18273.116850 eV Total energy + Delta-G solvation = -3247.693730 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.59313 -39.30042 -37.85429 -36.76521 -34.75505 -34.03302 -31.77670 -30.84556 -29.41166 -28.72534 -27.24542 -26.09911 -24.23067 -23.13336 -21.88705 -20.97771 -18.68301 -18.39393 -18.32720 -17.45474 -17.07751 -16.84111 -16.57931 -16.33301 -16.00638 -15.41377 -15.09095 -14.59523 -14.22481 -14.15150 -13.84247 -13.78894 -13.44534 -13.33553 -12.94725 -12.91518 -12.57271 -12.52021 -12.40013 -12.39517 -11.99430 -11.86978 -11.58235 -11.26537 -10.58293 -10.51031 -10.44306 -8.97848 -8.56279 -8.12898 -6.21390 0.64325 1.46231 1.48538 1.55317 1.57114 2.23172 2.45362 2.99626 3.05940 3.20035 3.38828 3.50519 3.66094 4.07098 4.19366 4.30549 4.43697 4.48018 4.55772 4.57058 4.67287 4.69665 4.72666 4.79041 4.84706 4.88876 4.92261 5.00343 5.24462 5.25723 5.28653 5.71730 6.10694 6.35464 6.38355 6.51767 6.64146 6.91774 7.04271 7.45802 7.47328 8.97581 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.006638 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.276720 B = 4217.336254 C = 5059.185347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.076 3.924 4 C 0.052 3.948 5 N -0.523 5.523 6 C 0.207 3.793 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.963 3.037 12 H -0.271 1.271 13 H -0.290 1.290 14 H -0.264 1.264 15 C 0.161 3.839 16 C -0.120 4.120 17 O 0.081 5.919 18 N -0.376 5.376 19 C -0.022 4.022 20 C -0.066 4.066 21 C 0.111 3.889 22 N -0.839 5.839 23 H 0.053 0.947 24 H 0.033 0.967 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.011 0.989 31 H -0.032 1.032 32 H 0.262 0.738 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.407 0.593 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 -10.795 8.984 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.001 4.001 4 C -0.076 4.076 5 N -0.249 5.249 6 C 0.081 3.919 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.194 4.194 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.196 1.196 13 H -0.216 1.216 14 H -0.189 1.189 15 C 0.032 3.968 16 C -0.189 4.189 17 O 0.017 5.983 18 N -0.084 5.084 19 C -0.183 4.183 20 C -0.124 4.124 21 C 0.003 3.997 22 N -0.387 5.387 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.030 0.970 31 H -0.014 1.014 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.237 0.763 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.463 -11.147 10.178 15.102 hybrid contribution 0.013 0.811 -1.888 2.055 sum -0.450 -10.335 8.290 13.257 Atomic orbital electron populations 1.22828 0.80670 1.03195 1.00100 1.87949 1.20350 1.28078 1.95328 1.22493 0.93358 0.84686 0.99574 1.22151 0.94353 0.97803 0.93325 1.62060 1.23056 1.36172 1.03571 1.19469 0.94225 0.89841 0.88320 1.21390 1.48332 0.94671 0.90621 0.91408 1.25821 0.95126 0.95671 1.02779 1.70077 1.51181 1.09024 1.27345 0.85526 0.79100 0.78209 0.78308 1.19605 1.21611 1.18898 1.20101 0.90560 0.91665 0.94460 1.23286 1.14892 0.96376 0.84381 1.84687 1.68549 1.26224 1.18877 1.73641 1.19850 0.91835 1.23042 1.23692 1.06592 0.99600 0.88424 1.20216 1.03984 0.84472 1.03705 1.18286 1.01453 0.90944 0.89028 1.41440 1.83243 1.10743 1.03284 0.92832 0.94782 0.88953 0.91399 0.94822 0.90737 0.93352 0.97050 1.01426 0.92937 0.88362 0.94059 0.88899 0.90188 0.88898 0.76317 0.75798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -14.97 10.64 -148.98 -1.58 -16.56 16 3 C 0.08 2.73 6.12 71.98 0.44 3.17 16 4 C 0.05 1.97 5.23 86.30 0.45 2.42 16 5 N -0.52 -22.29 4.30 -905.34 -3.89 -26.18 16 6 C 0.21 10.51 4.56 85.56 0.39 10.90 16 7 C -0.51 -27.25 8.54 25.60 0.22 -27.03 16 8 H 0.07 3.44 7.48 -2.91 -0.02 3.42 16 9 C 0.00 0.21 5.46 84.65 0.46 0.67 16 10 N -0.94 -54.50 13.29 21.45 0.28 -54.21 16 11 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 15 C 0.16 6.16 5.30 85.56 0.45 6.62 16 16 C -0.12 -4.28 6.10 25.13 0.15 -4.13 16 17 O 0.08 2.93 10.22 68.57 0.70 3.63 16 18 N -0.38 -12.88 12.06 -48.94 -0.59 -13.47 16 19 C -0.02 -0.64 7.34 43.68 0.32 -0.32 16 20 C -0.07 -1.29 10.48 71.23 0.75 -0.54 16 21 C 0.11 3.53 7.52 38.03 0.29 3.82 16 22 N -0.84 -22.28 9.19 -50.72 -0.47 -22.75 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 26 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.03 1.34 6.69 -2.39 -0.02 1.33 16 28 H 0.07 2.78 6.10 -2.39 -0.01 2.76 16 29 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16 30 H 0.01 0.63 6.51 -2.39 -0.02 0.62 16 31 H -0.03 -1.73 8.04 -2.39 -0.02 -1.75 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.10 3.86 6.81 -2.39 -0.02 3.84 16 34 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 38 H 0.41 11.73 8.62 -92.71 -0.80 10.93 16 39 H 0.41 8.10 8.91 -92.71 -0.83 7.28 16 Total: -1.00 -65.62 328.73 1.10 -64.52 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.55 Total: 22.95 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.17 Total: -2.36 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -4.66 Total: -116.61 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.88 Total: -12.92 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -65.62 1.10 -64.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699997055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.334 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds