Wall clock time and date at job start Mon Mar 30 2020 04:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47630 * 2 1 4 4 C 1.50702 * 109.47211 * 120.00029 * 2 1 3 5 5 H 1.08006 * 120.00084 * 119.99784 * 4 2 1 6 6 C 1.37876 * 120.00035 * 300.00127 * 4 2 1 7 7 N 1.31511 * 119.99698 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00047 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47114 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46768 * 119.99731 * 8 6 4 11 11 H 1.48496 * 109.46934 * 239.99815 * 8 6 4 12 12 N 1.46899 * 109.47212 * 239.99859 * 2 1 3 13 13 C 1.46903 * 111.00484 * 183.95459 * 12 2 1 14 14 C 1.46897 * 111.00111 * 59.99971 * 12 2 1 15 15 C 1.50692 * 109.47438 * 190.00050 * 14 12 2 16 16 C 1.33328 * 122.71397 * 95.00026 * 15 14 12 17 17 S 1.76168 * 108.09917 * 180.02562 * 16 15 14 18 18 C 1.70965 * 90.35695 * 0.02562 * 17 16 15 19 19 N 1.38608 * 124.94871 * 179.97438 * 18 17 16 20 20 C 1.46499 * 119.99898 * 180.02562 * 19 18 17 21 21 C 1.46499 * 120.00041 * 0.02562 * 19 18 17 22 22 N 1.29686 * 110.09826 * 0.24250 * 18 17 16 23 23 H 1.09007 * 109.47390 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47089 * 299.99770 * 1 2 3 25 25 H 1.08998 * 109.47289 * 60.00365 * 1 2 3 26 26 H 0.97003 * 119.99576 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47091 * 296.04806 * 13 12 2 28 28 H 1.09001 * 109.46791 * 56.04148 * 13 12 2 29 29 H 1.08995 * 109.47720 * 176.04564 * 13 12 2 30 30 H 1.09003 * 109.46855 * 70.00310 * 14 12 2 31 31 H 1.09003 * 109.47427 * 310.00455 * 14 12 2 32 32 H 1.08004 * 125.94573 * 359.97438 * 16 15 14 33 33 H 1.09002 * 109.47391 * 59.99423 * 20 19 18 34 34 H 1.09001 * 109.46813 * 299.99479 * 20 19 18 35 35 H 1.09004 * 109.47041 * 179.97438 * 20 19 18 36 36 H 1.08999 * 109.47655 * 270.01055 * 21 19 18 37 37 H 1.09006 * 109.46899 * 30.00955 * 21 19 18 38 38 H 1.08997 * 109.46879 * 150.00132 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.1464 -2.2870 3.6038 10 1 3.1466 -0.1874 4.8165 11 1 1.1660 -1.5867 4.8160 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7946 -1.1871 14 6 1.5486 -0.0265 -2.4210 15 6 1.8579 -0.8912 -3.6158 16 6 0.9737 -1.7414 -4.1382 17 16 1.7327 -2.5470 -5.5087 18 6 3.1712 -1.6610 -5.2465 19 7 4.3230 -1.7731 -6.0094 20 6 5.4973 -0.9589 -5.6868 21 6 4.3660 -2.7059 -7.1383 22 7 3.0294 -0.8729 -4.2264 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7095 1.1617 3.4844 27 1 3.9192 0.2043 -1.2301 28 1 3.8069 -1.2915 -0.2719 29 1 3.8164 -1.3722 -2.0500 30 1 2.0519 0.9345 -2.5280 31 1 0.4722 0.1324 -2.3564 32 1 -0.0324 -1.9078 -3.7824 33 1 5.8294 -1.1854 -4.6736 34 1 5.2373 0.0974 -5.7563 35 1 6.2992 -1.1830 -6.3903 36 1 4.7183 -3.6779 -6.7933 37 1 3.3668 -2.8107 -7.5612 38 1 5.0446 -2.3228 -7.9003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700104932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:43 Heat of formation + Delta-G solvation = 71.017379 kcal Electronic energy + Delta-G solvation = -18637.472129 eV Core-core repulsion = 15835.749043 eV Total energy + Delta-G solvation = -2801.723086 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.66622 -37.20857 -36.12364 -32.72596 -30.27814 -29.02012 -28.45815 -26.86706 -26.08398 -24.64879 -23.44734 -21.57889 -19.62729 -19.10339 -17.76758 -16.26449 -16.04792 -15.66857 -15.14157 -14.97464 -14.13039 -13.99871 -13.87794 -13.06819 -12.93952 -12.84256 -12.76094 -12.46178 -12.18844 -12.14182 -11.82287 -11.10884 -10.99228 -10.82185 -10.62704 -10.55831 -10.11831 -9.96621 -9.87950 -9.73471 -9.28101 -8.90257 -8.78893 -8.37427 -7.46253 -7.07519 -5.96485 -4.00146 1.28523 1.36446 2.03874 2.84641 3.26086 3.33058 3.40655 3.45936 4.46030 4.57872 4.93254 5.03639 5.06934 5.31411 5.32315 5.41445 5.50256 5.65097 5.72678 5.83570 6.15365 6.23879 6.43461 6.48031 6.59352 6.71802 6.89829 6.95615 7.06352 7.10548 7.21499 7.58444 7.78224 7.88715 8.21971 8.30086 8.39723 8.66321 9.06804 9.64463 11.10515 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031499 B = 0.004358 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.714126 B = 6422.705351 C = 6811.801203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.499 4.499 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.530 5.530 13 C 0.043 3.957 14 C 0.121 3.879 15 C 0.134 3.866 16 C -0.280 4.280 17 S 0.060 5.940 18 C 0.311 3.689 19 N -0.596 5.596 20 C 0.110 3.890 21 C 0.097 3.903 22 N -0.534 5.534 23 H 0.035 0.965 24 H 0.085 0.915 25 H 0.009 0.991 26 H 0.259 0.741 27 H 0.009 0.991 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.090 0.910 32 H 0.173 0.827 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -5.263 -19.216 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.105 3.895 3 H 0.017 0.983 4 C -0.538 4.538 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.255 5.255 13 C -0.105 4.105 14 C -0.010 4.010 15 C 0.004 3.996 16 C -0.420 4.420 17 S 0.308 5.692 18 C -0.059 4.059 19 N -0.318 5.318 20 C -0.034 4.034 21 C -0.046 4.046 22 N -0.259 5.259 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.190 0.810 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.661 -6.064 -19.712 21.144 hybrid contribution 0.486 0.888 1.580 1.876 sum 5.147 -5.176 -18.132 19.546 Atomic orbital electron populations 1.21866 0.97739 0.99691 0.99888 1.19274 0.92322 0.92088 0.85784 0.98343 1.21193 1.30743 1.12177 0.89682 0.91826 1.24923 0.95274 0.95108 0.98966 1.69904 1.37142 1.23094 1.23218 0.86473 0.78574 0.79619 0.82941 1.19781 1.21188 1.21047 1.62146 1.09924 1.52220 1.01237 1.22177 0.88252 0.98861 1.01222 1.20691 1.00944 0.92775 0.86609 1.19954 0.86408 0.96856 0.96420 1.26196 1.06435 1.06848 1.02559 1.83552 1.07012 1.44945 1.33645 1.23486 0.92303 0.96229 0.93902 1.45603 1.10164 1.44751 1.31258 1.21566 0.85625 0.94988 1.01267 1.21755 1.02837 0.92529 0.87505 1.66258 1.24268 1.25868 1.09498 0.94601 0.89603 0.97259 0.93103 0.97237 0.91069 0.93268 0.94450 0.89188 0.80953 0.92123 0.92345 0.91018 0.92546 0.91436 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.76 37.15 0.33 -2.98 16 2 C 0.21 5.50 2.06 -68.87 -0.14 5.36 16 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 4 C -0.50 -14.01 7.88 -34.44 -0.27 -14.28 16 5 H 0.06 1.80 6.41 -52.48 -0.34 1.46 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.53 -12.23 4.61 -237.74 -1.10 -13.33 16 13 C 0.04 0.97 9.02 60.07 0.54 1.51 16 14 C 0.12 2.42 5.22 -4.98 -0.03 2.40 16 15 C 0.13 2.43 5.57 -84.18 -0.47 1.97 16 16 C -0.28 -4.48 11.08 29.02 0.32 -4.15 16 17 S 0.06 0.80 21.69 -107.50 -2.33 -1.53 16 18 C 0.31 4.62 7.75 -87.68 -0.68 3.94 16 19 N -0.60 -6.93 3.38 -191.88 -0.65 -7.57 16 20 C 0.11 1.12 10.44 59.85 0.62 1.75 16 21 C 0.10 0.73 10.38 59.85 0.62 1.35 16 22 N -0.53 -9.46 8.88 -11.36 -0.10 -9.56 16 23 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 25 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 1.65 6.10 -51.93 -0.32 1.34 16 29 H 0.05 1.04 6.41 -51.93 -0.33 0.70 16 30 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.09 1.73 5.78 -51.93 -0.30 1.43 16 32 H 0.17 2.52 8.06 -52.48 -0.42 2.09 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.49 7.05 -51.93 -0.37 0.13 16 38 H 0.08 0.40 7.92 -51.93 -0.41 -0.01 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -31.28 317.29 -8.66 -39.93 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.62 Total: -2.60 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 0.75 Total: -1.61 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -1.22 Total: -55.64 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.33 Total: -1.53 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.28 -8.66 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700104932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.952 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds